Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006291

Physical Location & Seq

Genomic Coordinates Reverse (-)

832035 .. 834549

Gene Structure 2515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G03380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGGTGAGAAAAAGGAAGAAACGGCGACGAAACCTCAAGGAGAGAAGAAACCTACCGATGGTGGAATCACCACCGTCGTTATGAAGCTTGATATGCATTGTGAAGGTTGCGGCAAAAAAATCAAACGCATCTTCAAACATTTCAAAGGTGTGGAAGATGTGAAGATTGATTATAAGAGTAACAAATTGACGGTGATCGGAAACGTAGATCCAGTGGAAGTTCGTGATAAAGTGGCCGACAAAATTAAGAGACCAGTCGAACTTGTCTCTACAGTAGCGCCGCCGAAGAAAGAGACACCTCCTTCATCAGGCGGTGCAGAGAAGAAGCCTTCTCCGGCAGCGGAGGAGAAACCGGCTGAGAAGAAACCAGCCGCCGTTGAGAAACCCGGTGAGAAAAAAGAAGAGAAGAAGAAAGAGGAAGGAGAGAAGAAAGCTTCTCCTCCACCACCACCTAAAGAGAGTACTGTGGTTTTGAAGACCAAGTTACATTGTGAAGGTTGCGAACACAAAATCAAAAGAATAGTCAACAAAATTAAAGGGGTTAATTCGGTTGCTATTGATAGTGCCAAGGATTTGGTTATAGTTAAGGGGATCATTGACGTGAAACAACTCACTCCTTATCTTAACGAGAAGCTTAAACGCACGGTGGAAGTTGTTCCGGCCAAAAAGGATGACGGAGCACCAGTGGCAGCTGCAGCGGCGGCTCCAGCTGGCGGTGAGAAGAAGGACAAAGTTGCTGGTGAAAAGAAAGAGATTAAAGATGTTGGAGAAAAGAAAGTCGACGGTGGTGGTGAGAAGAAGAAAGAAGTTGCTGTTGGCGGCGGTGGAGGAGGAGGTGGAGGTGGAGGAGACGGTGGTGCTATGGATGTGAAGAAATCGGAGTATAACGGTTACGGTTATCCTCCACAGCCGATGTATTACTACCCAGAAGGACAAGTATACGGTCAACAACATTACATGATGCAAGGTCAATCATCGCAATCGTATGTACAAGAACCGTATTCGAACCAAGGATACGTGCAAGAATCGTATATGAACCAAGGTTACGGTCAAGGGTATGGACAAGAAGCTCCACCACCACCATATATGAACCAACAAGGTTACGCAGATCCTTATGGTCACATGCGTGCGCCTGAGTTGTTTAGTGATGAGAATCCAAATGGGTGTTCTGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

392

Amino Acids

42.26

Weight (kDa)

8.83

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	29 - 81	7e-12	Heavy-metal-associated domain
HMA	PF00403	161 - 217	1.1e-09	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36950 AT5G03380 AT5G03380
fragaria_vesca	FvH4_6g16410 FvH4_6g16410
malus_domestica	MD04G1093300.v1.1 MD12G1113000.v1.1
prunus_persica	Prupe.6G232100_v2.0.a1 Prupe.6G232100_v2.0.a1
pyrus_communis	pycom04g08830 pycom12g11200
rosa_chinensis	RchiOBHm_Chr3g0470271
rosa_laevigata	RLG00000024284 RLG00000024290
rosa_multiflora	Rmu_co8443661.1_g000001 Rmu_sc0005600.1_g000019 Rmu_sc0011073.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411000 Rroxscaffold_6G00411110
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh1AG099300 Rh3AG157500 Rh3BG181600 Rh3CG172400 Rh3DG193300
rosa_wichuraiana	Rw3G014860 Rw3G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AccI	GTMKAC	2 cut(s)	780, 939
AclWI	GGATC	3 cut(s)	203, 599, 1103
AcoI	YGGCCR	2 cut(s)	234, 660
AfaI	GTAC	2 cut(s)	463, 990
AfiI	CCNNNNNNNGG	3 cut(s)	59, 308, 713
AgsI	TTSAA	3 cut(s)	136, 145, 475
AjiI	CACGTC	1 cut(s)	601
AjuI	GAANNNNNNNTTGG	3 cut(s)	798, 830, 1150
AleI	CACNNNNGTG	1 cut(s)	1125
AluBI	AGCT	6 cut(s)	88, 434, 634, 692, 710, 1070
AluI	AGCT	6 cut(s)	88, 434, 634, 692, 710, 1070
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	4 cut(s)	244, 271, 287, 843
AlwI	GGATC	3 cut(s)	203, 599, 1103
AoxI	GGCC	2 cut(s)	234, 660
ApeKI	GCWGC	4 cut(s)	338, 689, 692, 695
ArsI	GACNNNNNNTTYG	2 cut(s)	507, 539
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	2 cut(s)	280, 1132
AsuC2I	CCSGG	1 cut(s)	387
AsuHPI	GGTGA	7 cut(s)	17, 61, 205, 401, 728, 752, 803
AsuII	TTCGAA	1 cut(s)	1004
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	682
BbvI	GCAGC	4 cut(s)	350, 679, 701, 707
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	2 cut(s)	39, 359
BciVI	GTATCC	1 cut(s)	1007
BcnI	CCSGG	1 cut(s)	387
BcoDI	GTCTC	4 cut(s)	244, 271, 287, 843
BfmI	CTRYAG	2 cut(s)	270, 693
BfoI	RGCGCY	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	1007
BmcAI	AGTACT	1 cut(s)	463
Bme1390I	CCNGG	1 cut(s)	387
BmgBI	CACGTC	1 cut(s)	601
BmiI	GGNNCC	1 cut(s)	705
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	2 cut(s)	138, 951
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	690
Bpu14I	TTCGAA	1 cut(s)	1004
BpuEI	CTTGAG	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	387
BsaAI	YACGTR	1 cut(s)	1018
BsaBI	GATNNNNATC	1 cut(s)	1152
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	3 cut(s)	567, 1009, 1039
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 308, 713
Bse118I	RCCGGY	1 cut(s)	352
Bse1I	ACTGG	3 cut(s)	212, 254, 683
Bse8I	GATNNNNATC	1 cut(s)	1152
BseDI	CCNNGG	3 cut(s)	567, 1009, 1039
BseGI	GGATG	2 cut(s)	676, 871
BseJI	GATNNNNATC	1 cut(s)	1152
BseLI	CCNNNNNNNGG	3 cut(s)	59, 308, 713
BseMII	CTCAG	2 cut(s)	348, 1125
BseNI	ACTGG	3 cut(s)	212, 254, 683
BseRI	GAGGAG	5 cut(s)	359, 429, 843, 846, 861
BseXI	GCAGC	4 cut(s)	350, 679, 701, 707
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	2 cut(s)	236, 662
BsiHKAI	GWGCWC	1 cut(s)	682
BsiSI	CCGG	4 cut(s)	335, 353, 387, 659
BslI	CCNNNNNNNGG	3 cut(s)	59, 308, 713
BsmAI	GTCTC	4 cut(s)	244, 271, 287, 843
BsmBI	CGTCTC	1 cut(s)	843
BsnI	GGCC	2 cut(s)	236, 662
Bso31I	GGTCTC	1 cut(s)	244
Bsp119I	TTCGAA	1 cut(s)	1004
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp1407I	TGTACA	1 cut(s)	988
Bsp143I	GATC	4 cut(s)	195, 208, 591, 1108
BspANI	GGCC	2 cut(s)	236, 662
BspCNI	CTCAG	2 cut(s)	349, 1126
BspLI	GGNNCC	1 cut(s)	705
BspMAI	CTGCAG	1 cut(s)	697
BspPI	GGATC	3 cut(s)	203, 599, 1103
BspT104I	TTCGAA	1 cut(s)	1004
BspTNI	GGTCTC	1 cut(s)	244
BsrFI	RCCGGY	1 cut(s)	352
BsrGI	TGTACA	1 cut(s)	988
BsrI	ACTGG	3 cut(s)	212, 254, 683
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	3 cut(s)	567, 1009, 1039
BssMI	GATC	4 cut(s)	195, 208, 591, 1108
BssNAI	GTATAC	1 cut(s)	940
BssT1I	CCWWGG	3 cut(s)	567, 1009, 1039
Bst1107I	GTATAC	1 cut(s)	940
Bst6I	CTCTTC	1 cut(s)	396
BstAUI	TGTACA	1 cut(s)	988
BstBAI	YACGTR	1 cut(s)	1018
BstBI	TTCGAA	1 cut(s)	1004
BstC8I	GCNNGC	2 cut(s)	712, 1128
BstDEI	CTNAG	2 cut(s)	357, 1134
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	676, 871
BstH2I	RGCGCY	1 cut(s)	281
BstHHI	GCGC	2 cut(s)	280, 1132
BstKTI	GATC	4 cut(s)	198, 211, 594, 1111
BstMAI	GTCTC	4 cut(s)	244, 271, 287, 843
BstMBI	GATC	4 cut(s)	195, 208, 591, 1108
BstMWI	GCNNNNNNNGC	6 cut(s)	94, 686, 695, 698, 701, 707
BstNSI	RCATGY	1 cut(s)	1126
BstSCI	CCNGG	1 cut(s)	385
BstSFI	CTRYAG	2 cut(s)	270, 693
BstV1I	GCAGC	4 cut(s)	350, 679, 701, 707
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	2 cut(s)	208, 1108
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	2 cut(s)	208, 1108
BstZ17I	GTATAC	1 cut(s)	940
BsuI	GTATCC	1 cut(s)	1007
BsuRI	GGCC	2 cut(s)	236, 662
BtgZI	GCGATG	1 cut(s)	960
BtrI	CACGTC	1 cut(s)	601
BtsCI	GGATG	2 cut(s)	676, 871
BtsIMutI	CAGTG	2 cut(s)	219, 690
Cac8I	GCNNGC	2 cut(s)	712, 1128
CfoI	GCGC	2 cut(s)	280, 1132
Cfr10I	RCCGGY	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	462, 989
CviAII	CATG	2 cut(s)	958, 1123
CviQI	GTAC	2 cut(s)	462, 989
DdeI	CTNAG	2 cut(s)	357, 1134
DpnI	GATC	4 cut(s)	197, 210, 593, 1110
DpnII	GATC	4 cut(s)	195, 208, 591, 1108
EaeI	YGGCCR	2 cut(s)	234, 660
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	3 cut(s)	567, 1009, 1039
Eco31I	GGTCTC	1 cut(s)	244
EcoNI	CCTNNNNNAGG	1 cut(s)	306
EcoT14I	CCWWGG	3 cut(s)	567, 1009, 1039
EcoT22I	ATGCAT	1 cut(s)	99
ErhI	CCWWGG	3 cut(s)	567, 1009, 1039
Esp3I	CGTCTC	1 cut(s)	843
FaeI	CATG	2 cut(s)	961, 1126
FatI	CATG	2 cut(s)	957, 1122
FblI	GTMKAC	2 cut(s)	780, 939
FokI	GGATG	2 cut(s)	683, 878
GlaI	GCGC	2 cut(s)	279, 1131
GsuI	CTGGAG	1 cut(s)	690
HaeII	RGCGCY	1 cut(s)	281
HaeIII	GGCC	2 cut(s)	236, 662
HapII	CCGG	4 cut(s)	335, 353, 387, 659
HhaI	GCGC	2 cut(s)	280, 1132
Hin1II	CATG	2 cut(s)	961, 1126
Hin6I	GCGC	2 cut(s)	278, 1130
HinP1I	GCGC	2 cut(s)	278, 1130
HincII	GTYRAC	3 cut(s)	526, 781, 947
HindII	GTYRAC	3 cut(s)	526, 781, 947
HindIII	AAGCTT	3 cut(s)	86, 432, 632
HinfI	GANTC	3 cut(s)	66, 1025, 1153
HpaII	CCGG	4 cut(s)	335, 353, 387, 659
HphI	GGTGA	7 cut(s)	17, 61, 205, 401, 728, 752, 803
Hpy166II	GTNNAC	4 cut(s)	526, 781, 940, 947
Hpy188I	TCNGA	2 cut(s)	200, 880
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	4 cut(s)	526, 781, 940, 947
Hpy99I	CGWCG	3 cut(s)	31, 80, 785
HpyAV	CCTTC	7 cut(s)	98, 312, 339, 413, 488, 718, 923
HpyCH4IV	ACGT	3 cut(s)	204, 600, 1017
HpyCH4V	TGCA	5 cut(s)	97, 317, 695, 964, 1021
HpyF10VI	GCNNNNNNNGC	6 cut(s)	94, 686, 695, 698, 701, 707
HpyF3I	CTNAG	2 cut(s)	357, 1134
HpySE526I	ACGT	3 cut(s)	204, 600, 1017
Hsp92II	CATG	2 cut(s)	961, 1126
HspAI	GCGC	2 cut(s)	278, 1130
Kzo9I	GATC	4 cut(s)	195, 208, 591, 1108
LmnI	GCTCC	3 cut(s)	677, 709, 1075
Lsp1109I	GCAGC	4 cut(s)	350, 679, 701, 707
LweI	GCATC	2 cut(s)	138, 951
MaeII	ACGT	3 cut(s)	204, 600, 1017
MaeIII	GTNAC	6 cut(s)	179, 483, 890, 1043, 1100, 1118
MalI	GATC	4 cut(s)	197, 210, 593, 1110
MboI	GATC	4 cut(s)	195, 208, 591, 1108
MflI	RGATCY	2 cut(s)	208, 1108
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	4 cut(s)	185, 243, 531, 544
MmeI	TCCRAC	1 cut(s)	745
Mph1103I	ATGCAT	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	7 cut(s)	246, 534, 543, 585, 624, 636, 756
MslI	CAYNNNNRTG	2 cut(s)	599, 1125
MspA1I	CMGCKG	4 cut(s)	341, 692, 698, 710
MspI	CCGG	4 cut(s)	335, 353, 387, 659
MspR9I	CCNGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	6 cut(s)	94, 686, 695, 698, 701, 707
NciI	CCSGG	1 cut(s)	387
NdeII	GATC	4 cut(s)	195, 208, 591, 1108
NlaIII	CATG	2 cut(s)	961, 1126
NlaIV	GGNNCC	1 cut(s)	705
NmuCI	GTSAC	1 cut(s)	1118
NsiI	ATGCAT	1 cut(s)	99
NspI	RCATGY	1 cut(s)	1126
NspV	TTCGAA	1 cut(s)	1004
OliI	CACNNNNGTG	1 cut(s)	1125
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	3 cut(s)	66, 1025, 1153
Ppu21I	YACGTR	1 cut(s)	1018
PsiI	TTATAA	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	705
PsrI	GAACNNNNNNTAC	4 cut(s)	998, 1028, 1030, 1060
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	2 cut(s)	208, 1108
PvuII	CAGCTG	2 cut(s)	692, 710
RsaI	GTAC	2 cut(s)	463, 990
RsaNI	GTAC	2 cut(s)	462, 989
RseI	CAYNNNNRTG	2 cut(s)	599, 1125
SalI	GTCGAC	1 cut(s)	779
SaqAI	TTAA	7 cut(s)	246, 534, 543, 585, 624, 636, 756
Sau3AI	GATC	4 cut(s)	195, 208, 591, 1108
ScaI	AGTACT	1 cut(s)	463
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	1 cut(s)	682
SfaNI	GCATC	2 cut(s)	138, 951
SfcI	CTRYAG	2 cut(s)	270, 693
SfuI	TTCGAA	1 cut(s)	1004
SmiMI	CAYNNNNRTG	2 cut(s)	599, 1125
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	4 cut(s)	185, 243, 531, 544
StyD4I	CCNGG	1 cut(s)	385
StyI	CCWWGG	3 cut(s)	567, 1009, 1039
TaiI	ACGT	3 cut(s)	207, 603, 1020
TaqI	TCGA	3 cut(s)	258, 780, 1004
TasI	AATT	4 cut(s)	185, 243, 531, 544
TatI	WGTACW	2 cut(s)	461, 988
TauI	GCSGC	6 cut(s)	114, 283, 374, 701, 704, 822
TfiI	GAWTC	3 cut(s)	66, 1025, 1153
Tru1I	TTAA	7 cut(s)	246, 534, 543, 585, 624, 636, 756
Tru9I	TTAA	7 cut(s)	246, 534, 543, 585, 624, 636, 756
TscAI	CASTG	2 cut(s)	219, 690
TseFI	GTSAC	1 cut(s)	1118
TseI	GCWGC	4 cut(s)	338, 689, 692, 695
Tsp45I	GTSAC	1 cut(s)	1118
TspDTI	ATGAA	4 cut(s)	98, 294, 1049, 1103
TspGWI	ACGGA	1 cut(s)	690
TspRI	CASTG	2 cut(s)	219, 690
XagI	CCTNNNNNAGG	1 cut(s)	306
XceI	RCATGY	1 cut(s)	1126
XmiI	GTMKAC	2 cut(s)	780, 939
XmnI	GAANNNNTTC	1 cut(s)	654
ZrmI	AGTACT	1 cut(s)	463
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.