FvH4_6g16410

Axoneme-associated protein mst101(2)-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
10320520 .. 10322785
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16410.t1

Sequence Viewer

Length: 1044 bp
ATGGGCGAGAAAGTTGAAGGTGCGAAGAATGAGGGCGAGAAGAAGGCCGCCGACGCCGGAAAGAAGGTCGACGACGGCTCAAACACTGTCGTTTACAAGACCGATATGCATTGCGAAGGATGCGCCAAGAAAATCAAACGAGCTGTCAAAAACTTCCCCGGCGTTGAGCAAGTGAAGACAGATGCCGGAGCTAACAAGCTGACGGTGACCGGGAAAATGGACCCCGCCGCTCTTAAGGCGAGACTGGAGGAGAAGATTAAGAAGAAGGTCGACCTCGTCTCTCCTCAGCCGGCCAAAAAGGAAGGCGGTGGAGGCGGAGGAGACAAGAAGGCGGATGAAAAGTCCGAAAAGCCCTCGGAGAAGAAAGCCGAGGAGAAAAAGCCGGCCGATAAGAAGCCCATAGAGAAAGAGGCGGCTGCCCCCAAAGAGAGCACTGTTCCTTTGAAGATTCGGTTGCATTGCGAGGGTTGCATCCAGAAGATGCGAAGTAAAATCTTGAAATATAAAGGTGTTAGTACAGTGAGCTTTGACATGGCCAAGGATCTGGTCACGGTGGTGGGCACTATGGACACCAAAACTTTAGTTCCTTATCTTTCGGAGAAGTTCAAGAGACCAGTCGACGTGATCGCGCCGGCGAAGAAGGACGATGGCGCCGGAGCCAAGAAAGATGATAAGAAACCGGCTGCTGAAGGCGGCGAGAAGAAAGACGGCGGCGGTGACAAAAAGGAAGAAAAGAAAGAGGGAAAGAAGGAAGCTGCCCCCGCAGGCGAGAAGAAAGAGGAGAAAAAGGAAGCTGCTGCCGGCGGTGGCGGTGGAGGCGCGGTGGTGAACAAAATGGAGTACTCTGGTTACCCTTACGCGGCATCGACATCGTACTGGTACGACCCCGGACATGTTTACAACCACAACAAGTTTGTGATGGAGGCTCAGGAGCACCAGGCGCATGTTAACCAGGGCTACGGGCACTACGCAATGCCGATGGAGCATTATCCGGCGCCGCAGATGTTCAGCGACGAGAACCCCAACGGTTGTTCGGTGATGTGA

Protein Analysis

348

Amino Acids

37.42

Weight (kDa)

9.04

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 32 - 88 1.9e-15 Heavy-metal-associated domain
HMA PF00403 151 - 195 5.9e-09 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 650, 994
AccBSI CCGCTC 1 cut(s) 230
AccI GTMKAC 3 cut(s) 69, 270, 618
AccII CGCG 3 cut(s) 629, 821, 860
AclWI GGATC 1 cut(s) 549
AcoI YGGCCR 3 cut(s) 291, 384, 534
AcuI CTGAAG 1 cut(s) 708
AcyI GRCGYC 3 cut(s) 54, 651, 995
AfaI GTAC 4 cut(s) 517, 842, 875, 881
AfiI CCNNNNNNNGG 1 cut(s) 859
AflII CTTAAG 1 cut(s) 233
AflIII ACRYGT 1 cut(s) 892
AgsI TTSAA 4 cut(s) 17, 445, 499, 607
AjiI CACGTC 1 cut(s) 622
AjnI CCWGG 2 cut(s) 936, 951
AleI CACNNNNGTG 1 cut(s) 554
AluBI AGCT 6 cut(s) 143, 191, 199, 525, 755, 794
AluI AGCT 6 cut(s) 143, 191, 199, 525, 755, 794
Alw21I GWGCWC 2 cut(s) 434, 936
Alw26I GTCTC 4 cut(s) 235, 283, 315, 604
AlwI GGATC 1 cut(s) 549
AoxI GGCC 4 cut(s) 45, 291, 384, 534
ApeKI GCWGC 5 cut(s) 416, 683, 755, 794, 797
ArsI GACNNNNNNTTYG 2 cut(s) 129, 161
AspLEI GCGC 6 cut(s) 125, 631, 653, 821, 943, 997
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 3 cut(s) 159, 211, 888
AsuHPI GGTGA 3 cut(s) 217, 728, 838
AvaII GGWCC 1 cut(s) 220
BaeGI GKGCMC 2 cut(s) 563, 966
BalI TGGCCA 1 cut(s) 536
BanI GGYRCC 2 cut(s) 650, 994
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 434, 936
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 5 cut(s) 403, 670, 742, 781, 784
BccI CCATC 3 cut(s) 641, 913, 973
BceAI ACGGC 2 cut(s) 91, 724
BcgI CGANNNNNNTGC 2 cut(s) 852, 886
BciT130I CCWGG 2 cut(s) 938, 953
BcnI CCSGG 3 cut(s) 159, 211, 888
BcoDI GTCTC 4 cut(s) 235, 283, 315, 604
BfoI RGCGCY 2 cut(s) 654, 998
BfrI CTTAAG 1 cut(s) 233
BmcAI AGTACT 1 cut(s) 842
Bme1390I CCNGG 5 cut(s) 159, 211, 888, 938, 953
Bme18I GGWCC 1 cut(s) 220
BmgBI CACGTC 1 cut(s) 622
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 4 cut(s) 222, 652, 658, 996
BmrFI CCNGG 5 cut(s) 159, 211, 888, 938, 953
BmsI GCATC 5 cut(s) 110, 172, 471, 480, 872
BpiI GAAGAC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 266
Bpu10I CCTNAGC 2 cut(s) 285, 927
BpuMI CCSGG 3 cut(s) 159, 211, 888
BsaHI GRCGYC 3 cut(s) 54, 651, 995
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 6 cut(s) 157, 354, 369, 537, 886, 952
BsaXI ACNNNNNCTCC 2 cut(s) 807, 837
Bsc4I CCNNNNNNNGG 1 cut(s) 859
Bse118I RCCGGY 5 cut(s) 289, 382, 631, 679, 800
Bse1I ACTGG 3 cut(s) 249, 614, 881
Bse3DI GCAATG 3 cut(s) 109, 457, 978
BseBI CCWGG 2 cut(s) 938, 953
BseDI CCNNGG 6 cut(s) 157, 354, 369, 537, 886, 952
BseGI GGATG 3 cut(s) 125, 340, 471
BseLI CCNNNNNNNGG 1 cut(s) 859
BseMI GCAATG 3 cut(s) 109, 457, 978
BseMII CTCAG 2 cut(s) 299, 941
BseNI ACTGG 3 cut(s) 249, 614, 881
BseRI GAGGAG 5 cut(s) 263, 273, 333, 386, 794
BseSI GKGCMC 2 cut(s) 563, 966
BseX3I CGGCCG 1 cut(s) 384
BseXI GCAGC 5 cut(s) 403, 670, 742, 781, 784
Bsh1236I CGCG 3 cut(s) 629, 821, 860
Bsh1285I CGRYCG 1 cut(s) 387
BshFI GGCC 4 cut(s) 47, 293, 386, 536
BshNI GGYRCC 2 cut(s) 650, 994
BsiEI CGRYCG 1 cut(s) 387
BsiHKAI GWGCWC 2 cut(s) 434, 936
BslI CCNNNNNNNGG 1 cut(s) 859
BsmAI GTCTC 4 cut(s) 235, 283, 315, 604
BsmBI CGTCTC 1 cut(s) 283
BsnI GGCC 4 cut(s) 47, 293, 386, 536
Bso31I GGTCTC 1 cut(s) 604
Bsp1286I GDGCHC 4 cut(s) 434, 563, 936, 966
Bsp143I GATC 2 cut(s) 541, 624
BspANI GGCC 4 cut(s) 47, 293, 386, 536
BspCNI CTCAG 2 cut(s) 298, 940
BspFNI CGCG 3 cut(s) 629, 821, 860
BspLI GGNNCC 4 cut(s) 222, 652, 658, 996
BspPI GGATC 1 cut(s) 549
BspT107I GGYRCC 2 cut(s) 650, 994
BspTI CTTAAG 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 604
BsrBI CCGCTC 1 cut(s) 230
BsrDI GCAATG 3 cut(s) 109, 457, 978
BsrFI RCCGGY 5 cut(s) 289, 382, 631, 679, 800
BsrI ACTGG 3 cut(s) 249, 614, 881
BssAI RCCGGY 5 cut(s) 289, 382, 631, 679, 800
BssECI CCNNGG 6 cut(s) 157, 354, 369, 537, 886, 952
BssMI GATC 2 cut(s) 541, 624
BssNI GRCGYC 3 cut(s) 54, 651, 995
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 2 cut(s) 938, 953
Bst4CI ACNGT 6 cut(s) 88, 205, 436, 520, 553, 1028
BstACI GRCGYC 3 cut(s) 54, 651, 995
BstAFI CTTAAG 1 cut(s) 233
BstC8I GCNNGC 5 cut(s) 291, 384, 633, 766, 802
BstDEI CTNAG 2 cut(s) 285, 927
BstEII GGTNACC 2 cut(s) 205, 848
BstF5I GGATG 3 cut(s) 125, 340, 471
BstFNI CGCG 3 cut(s) 629, 821, 860
BstH2I RGCGCY 2 cut(s) 654, 998
BstHHI GCGC 6 cut(s) 125, 631, 653, 821, 943, 997
BstKTI GATC 2 cut(s) 544, 627
BstMAI GTCTC 4 cut(s) 235, 283, 315, 604
BstMBI GATC 2 cut(s) 541, 624
BstMCI CGRYCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 9 cut(s) 53, 120, 236, 312, 468, 761, 816, 940, 982
BstNI CCWGG 2 cut(s) 938, 953
BstNSI RCATGY 2 cut(s) 896, 947
BstPI GGTNACC 2 cut(s) 205, 848
BstSCI CCNGG 5 cut(s) 157, 209, 886, 936, 951
BstSLI GKGCMC 2 cut(s) 563, 966
BstUI CGCG 3 cut(s) 629, 821, 860
BstV1I GCAGC 5 cut(s) 403, 670, 742, 781, 784
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 1 cut(s) 541
BstXI CCANNNNNNTGG 1 cut(s) 544
BstYI RGATCY 1 cut(s) 541
BstZI CGGCCG 1 cut(s) 384
BsuRI GGCC 4 cut(s) 47, 293, 386, 536
BtrI CACGTC 1 cut(s) 622
BtsCI GGATG 3 cut(s) 125, 340, 471
BtsIMutI CAGTG 3 cut(s) 84, 432, 525
Cac8I GCNNGC 5 cut(s) 291, 384, 633, 766, 802
CfoI GCGC 6 cut(s) 125, 631, 653, 821, 943, 997
Cfr10I RCCGGY 5 cut(s) 289, 382, 631, 679, 800
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 1 cut(s) 62
Csp6I GTAC 4 cut(s) 516, 841, 874, 880
CviAII CATG 3 cut(s) 532, 893, 944
CviQI GTAC 4 cut(s) 516, 841, 874, 880
DdeI CTNAG 2 cut(s) 285, 927
DinI GGCGCC 2 cut(s) 652, 996
DpnI GATC 2 cut(s) 543, 626
DpnII GATC 2 cut(s) 541, 624
EaeI YGGCCR 3 cut(s) 291, 384, 534
EagI CGGCCG 1 cut(s) 384
EciI GGCGGA 2 cut(s) 330, 347
EclXI CGGCCG 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 537
Eco31I GGTCTC 1 cut(s) 604
Eco47I GGWCC 1 cut(s) 220
Eco52I CGGCCG 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 708
Eco91I GGTNACC 2 cut(s) 205, 848
EcoO65I GGTNACC 2 cut(s) 205, 848
EcoRII CCWGG 2 cut(s) 936, 951
EcoT14I CCWWGG 1 cut(s) 537
EcoT22I ATGCAT 1 cut(s) 111
EgeI GGCGCC 2 cut(s) 652, 996
EheI GGCGCC 2 cut(s) 652, 996
ErhI CCWWGG 1 cut(s) 537
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 3 cut(s) 535, 896, 947
FaiI YATR 7 cut(s) 107, 401, 504, 533, 566, 894, 945
FatI CATG 3 cut(s) 531, 892, 943
FauI CCCGC 2 cut(s) 232, 769
FblI GTMKAC 3 cut(s) 69, 270, 618
FokI GGATG 3 cut(s) 132, 347, 458
GlaI GCGC 6 cut(s) 124, 630, 652, 820, 942, 996
GsuI CTGGAG 1 cut(s) 266
HaeII RGCGCY 2 cut(s) 654, 998
HaeIII GGCC 4 cut(s) 47, 293, 386, 536
HgaI GACGC 1 cut(s) 62
HhaI GCGC 6 cut(s) 125, 631, 653, 821, 943, 997
Hin1I GRCGYC 3 cut(s) 54, 651, 995
Hin1II CATG 3 cut(s) 535, 896, 947
Hin6I GCGC 6 cut(s) 123, 629, 651, 819, 941, 995
HinP1I GCGC 6 cut(s) 123, 629, 651, 819, 941, 995
HincII GTYRAC 4 cut(s) 70, 271, 619, 949
HindII GTYRAC 4 cut(s) 70, 271, 619, 949
HinfI GANTC 1 cut(s) 448
HpaI GTTAAC 1 cut(s) 949
HphI GGTGA 3 cut(s) 217, 728, 838
Hpy166II GTNNAC 7 cut(s) 70, 94, 271, 619, 829, 898, 949
Hpy188I TCNGA 3 cut(s) 346, 358, 598
Hpy188III TCNNGA 4 cut(s) 475, 496, 607, 929
Hpy8I GTNNAC 7 cut(s) 70, 94, 271, 619, 829, 898, 949
Hpy99I CGWCG 5 cut(s) 56, 74, 77, 623, 1016
HpyCH4III ACNGT 6 cut(s) 88, 205, 436, 520, 553, 1028
HpyCH4IV ACGT 1 cut(s) 621
HpyCH4V TGCA 3 cut(s) 109, 457, 471
HpyF10VI GCNNNNNNNGC 9 cut(s) 53, 120, 236, 312, 468, 761, 816, 940, 982
HpyF3I CTNAG 2 cut(s) 285, 927
HpySE526I ACGT 1 cut(s) 621
Hsp92I GRCGYC 3 cut(s) 54, 651, 995
Hsp92II CATG 3 cut(s) 535, 896, 947
HspAI GCGC 6 cut(s) 123, 629, 651, 819, 941, 995
KasI GGCGCC 2 cut(s) 650, 994
KroI GCCGGC 4 cut(s) 289, 382, 631, 800
KroNI GCCGGC 4 cut(s) 291, 384, 633, 802
KspAI GTTAAC 1 cut(s) 949
Kzo9I GATC 2 cut(s) 541, 624
LmnI GCTCC 4 cut(s) 188, 656, 931, 982
Lsp1109I GCAGC 5 cut(s) 403, 670, 742, 781, 784
LweI GCATC 5 cut(s) 110, 172, 471, 480, 872
MaeII ACGT 1 cut(s) 621
MaeIII GTNAC 4 cut(s) 205, 547, 716, 848
MalI GATC 2 cut(s) 543, 626
MbiI CCGCTC 1 cut(s) 230
MboI GATC 2 cut(s) 541, 624
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 4 cut(s) 434, 563, 936, 966
MlsI TGGCCA 1 cut(s) 536
MluNI TGGCCA 1 cut(s) 536
Mly113I GGCGCC 2 cut(s) 651, 995
Mox20I TGGCCA 1 cut(s) 536
Mph1103I ATGCAT 1 cut(s) 111
MreI CGCCGGCG 1 cut(s) 631
MroNI GCCGGC 4 cut(s) 289, 382, 631, 800
MscI TGGCCA 1 cut(s) 536
MseI TTAA 3 cut(s) 234, 258, 948
MslI CAYNNNNRTG 1 cut(s) 554
Msp20I TGGCCA 1 cut(s) 536
MspCI CTTAAG 1 cut(s) 233
MspR9I CCNGG 5 cut(s) 159, 211, 888, 938, 953
MvaI CCWGG 2 cut(s) 938, 953
MvnI CGCG 3 cut(s) 629, 821, 860
MwoI GCNNNNNNNGC 9 cut(s) 53, 120, 236, 312, 468, 761, 816, 940, 982
NaeI GCCGGC 4 cut(s) 291, 384, 633, 802
NarI GGCGCC 2 cut(s) 651, 995
NciI CCSGG 3 cut(s) 159, 211, 888
NdeII GATC 2 cut(s) 541, 624
NgoMIV GCCGGC 4 cut(s) 289, 382, 631, 800
NlaIII CATG 3 cut(s) 535, 896, 947
NlaIV GGNNCC 4 cut(s) 222, 652, 658, 996
NmeAIII GCCGAG 1 cut(s) 394
NmuCI GTSAC 3 cut(s) 205, 547, 716
NsiI ATGCAT 1 cut(s) 111
NspI RCATGY 2 cut(s) 896, 947
OliI CACNNNNGTG 1 cut(s) 554
PciI ACATGT 1 cut(s) 892
PdiI GCCGGC 4 cut(s) 291, 384, 633, 802
PfeI GAWTC 1 cut(s) 448
PflFI GACNNNGTC 1 cut(s) 275
PluTI GGCGCC 2 cut(s) 654, 998
PscI ACATGT 1 cut(s) 892
Psp6I CCWGG 2 cut(s) 936, 951
PspEI GGTNACC 2 cut(s) 205, 848
PspGI CCWGG 2 cut(s) 936, 951
PspN4I GGNNCC 4 cut(s) 222, 652, 658, 996
PspPI GGNCC 1 cut(s) 220
PsuI RGATCY 1 cut(s) 541
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 4 cut(s) 517, 842, 875, 881
RsaNI GTAC 4 cut(s) 516, 841, 874, 880
RseI CAYNNNNRTG 1 cut(s) 554
SalI GTCGAC 3 cut(s) 68, 269, 617
SaqAI TTAA 3 cut(s) 234, 258, 948
Sau3AI GATC 2 cut(s) 541, 624
Sau96I GGNCC 1 cut(s) 220
ScaI AGTACT 1 cut(s) 842
ScrFI CCNGG 5 cut(s) 159, 211, 888, 938, 953
SduI GDGCHC 4 cut(s) 434, 563, 936, 966
SfaNI GCATC 5 cut(s) 110, 172, 471, 480, 872
SfoI GGCGCC 2 cut(s) 652, 996
SgrAI CRCCGGYG 1 cut(s) 631
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SspDI GGCGCC 2 cut(s) 650, 994
StyD4I CCNGG 5 cut(s) 157, 209, 886, 936, 951
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 6 cut(s) 88, 205, 436, 520, 553, 1028
TaiI ACGT 1 cut(s) 624
TaqI TCGA 4 cut(s) 69, 270, 618, 866
TaqII GACCGA 1 cut(s) 116
TatI WGTACW 2 cut(s) 515, 840
TauI GCSGC 7 cut(s) 50, 230, 416, 696, 714, 863, 1000
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 3 cut(s) 234, 258, 948
Tru9I TTAA 3 cut(s) 234, 258, 948
TscAI CASTG 3 cut(s) 91, 439, 525
TseFI GTSAC 3 cut(s) 205, 547, 716
TseI GCWGC 5 cut(s) 416, 683, 755, 794, 797
Tsp45I GTSAC 3 cut(s) 205, 547, 716
TspDTI ATGAA 1 cut(s) 351
TspRI CASTG 3 cut(s) 91, 439, 525
Tth111I GACNNNGTC 1 cut(s) 275
Vha464I CTTAAG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 220
XceI RCATGY 2 cut(s) 896, 947
XmiI GTMKAC 3 cut(s) 69, 270, 618
ZrmI AGTACT 1 cut(s) 842
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.