Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8443661.1

Orthogroup ID

OG0006291

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1169

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8443661.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

caagtgaagacagatgccggagccaacaaactgacggtgaccgggaaagtagacgccgccgctctgaaggcgaaactcgaggagaggattaggaagaaggtcgacctcgtctctgctcagccggccaaaaaggaaggaggcggtgaaggaggaggagacaagaagaaggcggaggaaaagtccgaaaagccctcggagaagaaagccgaggagaaaaagccggccgatcagcccaaagagaaagaggcccccaaagagagcacgatcgctttgaagatccggttgcattgcgagggttgcatccagaagatgcgcagtaaaatcttgaagttcaaaggtgttagtacggtggccttcgacatggccaaagatctggtcacggtggtgggcacgatggacaccaaagcgctagttccctatctgtcggagaagttcaagagaccggtcgacgtgatcgcgccggcgaagaaggacgacggcgccggagccaagaaagatgataagaaagcagctgccggaggcggcgagaagaaagacggaggtggtgacaagaaggaagctgcccccggaggcggtggaggcgagaagaaggaggagaagaaagaagctgctgctgccggcggcggtggaggtgcgatggtgaacaaaatggagtattccggctacccttacgcggcgtcgacgtcgtactggtacgaccccggacacgtttacaaccacaacaagtttgtgatggaggctcaggagcaccaggcgcatgttagccaagggtacgggaaccacaactacgcaatgcccatggagcactaccctgcgccgcagatgttcagcgacgagaaccccaacggttgttcggtgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

287

Amino Acids

30.67

Weight (kDa)

9.03

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36950 AT5G03380 AT5G03380
fragaria_vesca	FvH4_6g16410 FvH4_6g16410
malus_domestica	MD04G1093300.v1.1 MD12G1113000.v1.1
prunus_persica	Prupe.6G232100_v2.0.a1 Prupe.6G232100_v2.0.a1
pyrus_communis	pycom04g08830 pycom12g11200
rosa_chinensis	RchiOBHm_Chr3g0470271
rosa_laevigata	RLG00000024284 RLG00000024290
rosa_multiflora	Rmu_co8443661.1_g000001 Rmu_sc0005600.1_g000019 Rmu_sc0011073.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411000 Rroxscaffold_6G00411110
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh1AG099300 Rh3AG157500 Rh3BG181600 Rh3CG172400 Rh3DG193300
rosa_wichuraiana	Rw3G014860 Rw3G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	686
Acc16I	TGCGCA	1 cut(s)	314
AccB1I	GGYRCC	1 cut(s)	479
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	4 cut(s)	51, 102, 447, 680
AccII	CGCG	2 cut(s)	458, 674
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	3 cut(s)	123, 222, 363
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	4 cut(s)	54, 480, 677, 683
AfaI	GTAC	4 cut(s)	346, 689, 695, 773
AfeI	AGCGCT	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	572, 673
AflIII	ACRYGT	1 cut(s)	706
AgeI	ACCGGT	1 cut(s)	442
AgsI	TTSAA	4 cut(s)	274, 328, 334, 436
AjiI	CACGTC	1 cut(s)	451
AjnI	CCWGG	1 cut(s)	750
AleI	CACNNNNGTG	1 cut(s)	383
AluBI	AGCT	3 cut(s)	512, 560, 608
AluI	AGCT	3 cut(s)	512, 560, 608
Alw21I	GWGCWC	3 cut(s)	263, 750, 807
Alw26I	GTCTC	3 cut(s)	115, 150, 433
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	1 cut(s)	77
Aor51HI	AGCGCT	1 cut(s)	408
AoxI	GGCC	5 cut(s)	123, 222, 246, 351, 363
ApeKI	GCWGC	6 cut(s)	509, 512, 560, 608, 611, 614
ArsI	GACNNNNNNTTYG	2 cut(s)	360, 392
AsiGI	ACCGGT	1 cut(s)	442
AspLEI	GCGC	6 cut(s)	315, 409, 460, 482, 757, 817
AspS9I	GGNCC	1 cut(s)	247
AsuC2I	CCSGG	3 cut(s)	43, 567, 702
AsuHPI	GGTGA	4 cut(s)	49, 155, 557, 652
AvaI	CYCGRG	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	392
BalI	TGGCCA	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	3 cut(s)	263, 750, 807
BbvI	GCAGC	6 cut(s)	499, 521, 547, 595, 598, 601
BccI	CCATC	3 cut(s)	388, 631, 727
BceAI	ACGGC	1 cut(s)	493
BciT130I	CCWGG	1 cut(s)	752
BcnI	CCSGG	3 cut(s)	43, 567, 702
BcoDI	GTCTC	3 cut(s)	115, 150, 433
BfaI	CTAG	1 cut(s)	410
BfoI	RGCGCY	2 cut(s)	410, 483
BglII	AGATCT	1 cut(s)	370
BlpI	GCTNAGC	1 cut(s)	117
Bme1390I	CCNGG	4 cut(s)	43, 567, 702, 752
BmeT110I	CYCGRG	1 cut(s)	77
BmgBI	CACGTC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	5 cut(s)	22, 249, 481, 487, 779
BmrFI	CCNGG	4 cut(s)	43, 567, 702, 752
BmsI	GCATC	3 cut(s)	4, 300, 309
BpiI	GAAGAC	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuMI	CCSGG	3 cut(s)	43, 567, 702
BsaHI	GRCGYC	4 cut(s)	54, 480, 677, 683
BsaI	GGTCTC	1 cut(s)	433
BsaJI	CCNNGG	6 cut(s)	192, 207, 565, 700, 766, 798
BsaWI	WCCGGW	2 cut(s)	279, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 673
Bse118I	RCCGGY	5 cut(s)	121, 220, 442, 460, 617
Bse1I	ACTGG	1 cut(s)	695
Bse3DI	GCAATG	2 cut(s)	286, 798
BseBI	CCWGG	1 cut(s)	752
BseDI	CCNNGG	6 cut(s)	192, 207, 565, 700, 766, 798
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	572, 673
BseMI	GCAATG	2 cut(s)	286, 798
BseMII	CTCAG	2 cut(s)	131, 755
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	5 cut(s)	95, 165, 168, 224, 608
BseSI	GKGCMC	1 cut(s)	392
BseX3I	CGGCCG	1 cut(s)	222
BseXI	GCAGC	6 cut(s)	499, 521, 547, 595, 598, 601
Bsh1236I	CGCG	2 cut(s)	458, 674
Bsh1285I	CGRYCG	3 cut(s)	225, 267, 447
BshFI	GGCC	5 cut(s)	125, 224, 248, 353, 365
BshNI	GGYRCC	1 cut(s)	479
BshTI	ACCGGT	1 cut(s)	442
BsiEI	CGRYCG	3 cut(s)	225, 267, 447
BsiHKAI	GWGCWC	3 cut(s)	263, 750, 807
BsiHKCI	CYCGRG	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	572, 673
BsmAI	GTCTC	3 cut(s)	115, 150, 433
BsmBI	CGTCTC	1 cut(s)	115
BsnI	GGCC	5 cut(s)	125, 224, 248, 353, 365
Bso31I	GGTCTC	1 cut(s)	433
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	4 cut(s)	263, 392, 750, 807
Bsp143I	GATC	5 cut(s)	226, 264, 276, 370, 453
Bsp1720I	GCTNAGC	1 cut(s)	117
Bsp19I	CCATGG	1 cut(s)	798
BspANI	GGCC	5 cut(s)	125, 224, 248, 353, 365
BspCNI	CTCAG	2 cut(s)	130, 754
BspFNI	CGCG	2 cut(s)	458, 674
BspLI	GGNNCC	5 cut(s)	22, 249, 481, 487, 779
BspPI	GGATC	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	479
BspTNI	GGTCTC	1 cut(s)	433
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	2 cut(s)	286, 798
BsrFI	RCCGGY	5 cut(s)	121, 220, 442, 460, 617
BsrI	ACTGG	1 cut(s)	695
BssAI	RCCGGY	5 cut(s)	121, 220, 442, 460, 617
BssECI	CCNNGG	6 cut(s)	192, 207, 565, 700, 766, 798
BssMI	GATC	5 cut(s)	226, 264, 276, 370, 453
BssNI	GRCGYC	4 cut(s)	54, 480, 677, 683
BssT1I	CCWWGG	2 cut(s)	766, 798
Bst2UI	CCWGG	1 cut(s)	752
Bst4CI	ACNGT	4 cut(s)	37, 349, 382, 848
BstACI	GRCGYC	4 cut(s)	54, 480, 677, 683
BstC8I	GCNNGC	4 cut(s)	123, 222, 462, 619
BstDEI	CTNAG	2 cut(s)	117, 741
BstDSI	CCRYGG	1 cut(s)	798
BstEII	GGTNACC	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	2 cut(s)	458, 674
BstH2I	RGCGCY	2 cut(s)	410, 483
BstHHI	GCGC	6 cut(s)	315, 409, 460, 482, 757, 817
BstKTI	GATC	5 cut(s)	229, 267, 279, 373, 456
BstMAI	GTCTC	3 cut(s)	115, 150, 433
BstMBI	GATC	5 cut(s)	226, 264, 276, 370, 453
BstMCI	CGRYCG	3 cut(s)	225, 267, 447
BstMWI	GCNNNNNNNGC	7 cut(s)	68, 122, 297, 579, 614, 754, 802
BstNI	CCWGG	1 cut(s)	752
BstNSI	RCATGY	1 cut(s)	761
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	4 cut(s)	41, 565, 700, 750
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	2 cut(s)	458, 674
BstV1I	GCAGC	6 cut(s)	499, 521, 547, 595, 598, 601
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	2 cut(s)	276, 370
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	2 cut(s)	276, 370
BstZI	CGGCCG	1 cut(s)	222
BsuRI	GGCC	5 cut(s)	125, 224, 248, 353, 365
BtgI	CCRYGG	1 cut(s)	798
BtgZI	GCGATG	1 cut(s)	650
BtrI	CACGTC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	300
Cac8I	GCNNGC	4 cut(s)	123, 222, 462, 619
CfoI	GCGC	6 cut(s)	315, 409, 460, 482, 757, 817
Cfr10I	RCCGGY	5 cut(s)	121, 220, 442, 460, 617
Cfr13I	GGNCC	1 cut(s)	247
CseI	GACGC	2 cut(s)	62, 666
Csp6I	GTAC	4 cut(s)	345, 688, 694, 772
CspAI	ACCGGT	1 cut(s)	442
CviAII	CATG	3 cut(s)	361, 758, 799
CviQI	GTAC	4 cut(s)	345, 688, 694, 772
DdeI	CTNAG	2 cut(s)	117, 741
DinI	GGCGCC	1 cut(s)	481
DpnI	GATC	5 cut(s)	228, 266, 278, 372, 455
DpnII	GATC	5 cut(s)	226, 264, 276, 370, 453
EaeI	YGGCCR	3 cut(s)	123, 222, 363
EagI	CGGCCG	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	185
EclXI	CGGCCG	1 cut(s)	222
Eco130I	CCWWGG	2 cut(s)	766, 798
Eco31I	GGTCTC	1 cut(s)	433
Eco47III	AGCGCT	1 cut(s)	408
Eco52I	CGGCCG	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	77
Eco91I	GGTNACC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	750
EcoT14I	CCWWGG	2 cut(s)	766, 798
EgeI	GGCGCC	1 cut(s)	481
EheI	GGCGCC	1 cut(s)	481
ErhI	CCWWGG	2 cut(s)	766, 798
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	3 cut(s)	364, 761, 802
FaiI	YATR	3 cut(s)	362, 759, 800
FatI	CATG	3 cut(s)	360, 757, 798
FblI	GTMKAC	4 cut(s)	51, 102, 447, 680
FokI	GGATG	1 cut(s)	287
FspBI	CTAG	1 cut(s)	410
FspI	TGCGCA	1 cut(s)	314
GlaI	GCGC	6 cut(s)	314, 408, 459, 481, 756, 816
HaeII	RGCGCY	2 cut(s)	410, 483
HaeIII	GGCC	5 cut(s)	125, 224, 248, 353, 365
HgaI	GACGC	2 cut(s)	62, 666
HhaI	GCGC	6 cut(s)	315, 409, 460, 482, 757, 817
Hin1I	GRCGYC	4 cut(s)	54, 480, 677, 683
Hin1II	CATG	3 cut(s)	364, 761, 802
Hin6I	GCGC	6 cut(s)	313, 407, 458, 480, 755, 815
HinP1I	GCGC	6 cut(s)	313, 407, 458, 480, 755, 815
HincII	GTYRAC	3 cut(s)	103, 448, 681
HindII	GTYRAC	3 cut(s)	103, 448, 681
HphI	GGTGA	4 cut(s)	49, 155, 557, 652
Hpy166II	GTNNAC	6 cut(s)	52, 103, 448, 643, 681, 712
Hpy188I	TCNGA	4 cut(s)	66, 184, 196, 427
Hpy188III	TCNNGA	4 cut(s)	304, 325, 436, 743
Hpy8I	GTNNAC	6 cut(s)	52, 103, 448, 643, 681, 712
Hpy99I	CGWCG	6 cut(s)	452, 479, 682, 685, 688, 836
HpyAV	CCTTC	9 cut(s)	61, 91, 128, 140, 160, 364, 463, 547, 583
HpyCH4III	ACNGT	4 cut(s)	37, 349, 382, 848
HpyCH4IV	ACGT	3 cut(s)	450, 683, 708
HpyCH4V	TGCA	2 cut(s)	286, 300
HpyF10VI	GCNNNNNNNGC	7 cut(s)	68, 122, 297, 579, 614, 754, 802
HpyF3I	CTNAG	2 cut(s)	117, 741
HpySE526I	ACGT	3 cut(s)	450, 683, 708
Hsp92I	GRCGYC	4 cut(s)	54, 480, 677, 683
Hsp92II	CATG	3 cut(s)	364, 761, 802
HspAI	GCGC	6 cut(s)	313, 407, 458, 480, 755, 815
KasI	GGCGCC	1 cut(s)	479
KroI	GCCGGC	4 cut(s)	121, 220, 460, 617
KroNI	GCCGGC	4 cut(s)	123, 222, 462, 619
Kzo9I	GATC	5 cut(s)	226, 264, 276, 370, 453
LmnI	GCTCC	4 cut(s)	20, 485, 745, 802
Lsp1109I	GCAGC	6 cut(s)	499, 521, 547, 595, 598, 601
LweI	GCATC	3 cut(s)	4, 300, 309
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	3 cut(s)	450, 683, 708
MaeIII	GTNAC	3 cut(s)	37, 376, 545
MalI	GATC	5 cut(s)	228, 266, 278, 372, 455
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	5 cut(s)	226, 264, 276, 370, 453
MflI	RGATCY	2 cut(s)	276, 370
MhlI	GDGCHC	4 cut(s)	263, 392, 750, 807
MlsI	TGGCCA	1 cut(s)	365
MluNI	TGGCCA	1 cut(s)	365
Mly113I	GGCGCC	1 cut(s)	480
MmeI	TCCRAC	1 cut(s)	405
Mox20I	TGGCCA	1 cut(s)	365
MreI	CGCCGGCG	1 cut(s)	460
MroNI	GCCGGC	4 cut(s)	121, 220, 460, 617
MscI	TGGCCA	1 cut(s)	365
MslI	CAYNNNNRTG	1 cut(s)	383
Msp20I	TGGCCA	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	512
MspR9I	CCNGG	4 cut(s)	43, 567, 702, 752
MvaI	CCWGG	1 cut(s)	752
MvnI	CGCG	2 cut(s)	458, 674
MwoI	GCNNNNNNNGC	7 cut(s)	68, 122, 297, 579, 614, 754, 802
NaeI	GCCGGC	4 cut(s)	123, 222, 462, 619
NarI	GGCGCC	1 cut(s)	480
NciI	CCSGG	3 cut(s)	43, 567, 702
NcoI	CCATGG	1 cut(s)	798
NdeII	GATC	5 cut(s)	226, 264, 276, 370, 453
NgoMIV	GCCGGC	4 cut(s)	121, 220, 460, 617
NlaIII	CATG	3 cut(s)	364, 761, 802
NlaIV	GGNNCC	5 cut(s)	22, 249, 481, 487, 779
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	3 cut(s)	37, 376, 545
NsbI	TGCGCA	1 cut(s)	314
NspI	RCATGY	1 cut(s)	761
OliI	CACNNNNGTG	1 cut(s)	383
PaeR7I	CTCGAG	1 cut(s)	77
PdiI	GCCGGC	4 cut(s)	123, 222, 462, 619
PflFI	GACNNNGTC	1 cut(s)	107
PinAI	ACCGGT	1 cut(s)	442
Ple19I	CGATCG	1 cut(s)	267
PluTI	GGCGCC	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	750
PspEI	GGTNACC	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	750
PspN4I	GGNNCC	5 cut(s)	22, 249, 481, 487, 779
PspPI	GGNCC	1 cut(s)	247
PspXI	VCTCGAGB	1 cut(s)	77
PsrI	GAACNNNNNNTAC	2 cut(s)	770, 802
PsuI	RGATCY	2 cut(s)	276, 370
PsyI	GACNNNGTC	1 cut(s)	107
PvuI	CGATCG	1 cut(s)	267
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	4 cut(s)	346, 689, 695, 773
RsaNI	GTAC	4 cut(s)	345, 688, 694, 772
RseI	CAYNNNNRTG	1 cut(s)	383
SalI	GTCGAC	3 cut(s)	101, 446, 679
Sau3AI	GATC	5 cut(s)	226, 264, 276, 370, 453
Sau96I	GGNCC	1 cut(s)	247
ScrFI	CCNGG	4 cut(s)	43, 567, 702, 752
SduI	GDGCHC	4 cut(s)	263, 392, 750, 807
SfaNI	GCATC	3 cut(s)	4, 300, 309
SfoI	GGCGCC	1 cut(s)	481
Sfr274I	CTCGAG	1 cut(s)	77
SgrAI	CRCCGGYG	1 cut(s)	460
SgrDI	CGTCGACG	1 cut(s)	679
SlaI	CTCGAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SspDI	GGCGCC	1 cut(s)	479
SspMI	CTAG	1 cut(s)	410
StyD4I	CCNGG	4 cut(s)	41, 565, 700, 750
StyI	CCWWGG	2 cut(s)	766, 798
TaaI	ACNGT	4 cut(s)	37, 349, 382, 848
TaiI	ACGT	3 cut(s)	453, 686, 711
TaqI	TCGA	5 cut(s)	78, 102, 357, 447, 680
TauI	GCSGC	6 cut(s)	59, 62, 525, 624, 677, 820
TseFI	GTSAC	3 cut(s)	37, 376, 545
TseI	GCWGC	6 cut(s)	509, 512, 560, 608, 611, 614
Tsp45I	GTSAC	3 cut(s)	37, 376, 545
TspGWI	ACGGA	1 cut(s)	552
Tth111I	GACNNNGTC	1 cut(s)	107
XceI	RCATGY	1 cut(s)	761
XhoI	CTCGAG	1 cut(s)	77
XmiI	GTMKAC	4 cut(s)	51, 102, 447, 680
XspI	CTAG	1 cut(s)	410
ZraI	GACGTC	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.