Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006291

Physical Location & Seq

Genomic Coordinates Forward (+)

33672622 .. 33674351

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00411110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGCGAGAAAGTGGAAGGCGCGAAGAAGGCAGCCGATGCCGGCAAGAAGGTCGGCGGCGGACCACCCTCTGTCGTTTTTAAGATCCATAGGCATTGCGAGTGCCAGGGGCATGCCGACGAAATCAAAAAAGCTGTCAAAGACTTCCCCGGCGTTGAACGAGTGAAGACAGATGCCGGAGGCAACAAACTGATGGTGATCGGGAAAGTGGACGCCGCCGCTCTGAAGGCGAGACTCGAGGAGAAGACGAAGAAGAAGGTTGAACTCATCTCTCCTCAGTCGGACAAAAAGGAAGGACGCGGTGGAGGAGACAAGAAGAAGGTCAACGGCGCCGGAGCCAAGAAAGATGATAAGAAAGCAGCTTCCGGAGGCGGCAAGAAGAAAGACGAAGGTGGTGACAAGAAGAAAGGGAAAGGAGAGGAAACTAAGAAGGAAGTTGCCCCCGGAGGCAAGAAGGAAGAAAATATAGGGGGAAAGAAGGTAGCTGCCCCCGGAGGCGAGAAAAAAAAGAAGATAAAGGAAGCTGCTGCTGGCTACGGAACTCGTGATAAGGAGGGTAAAATAAATTTCGAGGTCGAGTATAAAGGTTTCAAATTACGGGTCTACAGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

204

Amino Acids

21.56

Weight (kDa)

9.78

Isoelectric Point (pI)

17.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36950 AT5G03380 AT5G03380
fragaria_vesca	FvH4_6g16410 FvH4_6g16410
malus_domestica	MD04G1093300.v1.1 MD12G1113000.v1.1
prunus_persica	Prupe.6G232100_v2.0.a1 Prupe.6G232100_v2.0.a1
pyrus_communis	pycom04g08830 pycom12g11200
rosa_chinensis	RchiOBHm_Chr3g0470271
rosa_laevigata	RLG00000024284 RLG00000024290
rosa_multiflora	Rmu_co8443661.1_g000001 Rmu_sc0005600.1_g000019 Rmu_sc0011073.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411000 Rroxscaffold_6G00411110
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh1AG099300 Rh3AG157500 Rh3BG181600 Rh3CG172400 Rh3DG193300
rosa_wichuraiana	Rw3G014860 Rw3G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	221
AccI	GTMKAC	1 cut(s)	603
AccII	CGCG	2 cut(s)	23, 300
AccIII	TCCGGA	1 cut(s)	365
AciI	CCGC	6 cut(s)	57, 60, 216, 219, 300, 372
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	245
AcyI	GRCGYC	2 cut(s)	213, 330
AgsI	TTSAA	3 cut(s)	158, 263, 592
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	4 cut(s)	134, 362, 485, 524
AluI	AGCT	4 cut(s)	134, 362, 485, 524
Alw26I	GTCTC	2 cut(s)	226, 303
AlwI	GGATC	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	236
Aor13HI	TCCGGA	1 cut(s)	365
ApeKI	GCWGC	5 cut(s)	32, 359, 485, 524, 527
ApoI	RAATTY	1 cut(s)	565
ArsI	GACNNNNNNTTYG	3 cut(s)	120, 152, 585
AspLEI	GCGC	2 cut(s)	23, 332
AspS9I	GGNCC	1 cut(s)	62
AsuC2I	CCSGG	3 cut(s)	150, 444, 492
AsuHPI	GGTGA	2 cut(s)	208, 407
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	329
BauI	CACGAG	1 cut(s)	543
BbsI	GAAGAC	2 cut(s)	173, 251
BbvI	GCAGC	5 cut(s)	44, 371, 472, 511, 514
BccI	CCATC	1 cut(s)	187
BceAI	ACGGC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	34, 68
BciT130I	CCWGG	1 cut(s)	107
BcnI	CCSGG	3 cut(s)	150, 444, 492
BcoDI	GTCTC	2 cut(s)	226, 303
BfmI	CTRYAG	1 cut(s)	604
BfoI	RGCGCY	1 cut(s)	333
BisI	GCNGC	9 cut(s)	33, 58, 216, 219, 360, 373, 486, 525, 528
BlsI	GCNGC	9 cut(s)	34, 59, 217, 220, 361, 374, 487, 526, 529
Bme1390I	CCNGG	4 cut(s)	107, 150, 444, 492
Bme18I	GGWCC	1 cut(s)	62
BmeT110I	CYCGRG	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	331, 337
BmrFI	CCNGG	4 cut(s)	107, 150, 444, 492
BmsI	GCATC	2 cut(s)	28, 163
BpiI	GAAGAC	2 cut(s)	173, 251
BpuMI	CCSGG	3 cut(s)	150, 444, 492
BsaBI	GATNNNNATC	1 cut(s)	197
BsaHI	GRCGYC	2 cut(s)	213, 330
BsaJI	CCNNGG	4 cut(s)	106, 148, 442, 490
BsaWI	WCCGGW	1 cut(s)	365
Bse118I	RCCGGY	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	197
BseAI	TCCGGA	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	4 cut(s)	106, 148, 442, 490
BseJI	GATNNNNATC	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	290
BseRI	GAGGAG	3 cut(s)	254, 264, 321
BseXI	GCAGC	5 cut(s)	44, 371, 472, 511, 514
Bsh1236I	CGCG	2 cut(s)	23, 300
BshNI	GGYRCC	1 cut(s)	329
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	7 cut(s)	42, 150, 177, 333, 366, 444, 492
BsmAI	GTCTC	2 cut(s)	226, 303
BsoBI	CYCGRG	1 cut(s)	236
Bsp13I	TCCGGA	1 cut(s)	365
Bsp143I	GATC	2 cut(s)	84, 198
BspACI	CCGC	6 cut(s)	57, 60, 216, 219, 300, 372
BspCNI	CTCAG	1 cut(s)	289
BspEI	TCCGGA	1 cut(s)	365
BspFNI	CGCG	2 cut(s)	23, 300
BspLI	GGNNCC	2 cut(s)	331, 337
BspPI	GGATC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	106, 148, 442, 490
BssMI	GATC	2 cut(s)	84, 198
BssNI	GRCGYC	2 cut(s)	213, 330
BssSI	CACGAG	1 cut(s)	543
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	608
BstACI	GRCGYC	2 cut(s)	213, 330
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	43, 114, 532
BstDEI	CTNAG	2 cut(s)	276, 426
BstFNI	CGCG	2 cut(s)	23, 300
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	23, 332
BstKTI	GATC	2 cut(s)	87, 201
BstMAI	GTCTC	2 cut(s)	226, 303
BstMBI	GATC	2 cut(s)	84, 198
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 38, 227
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	4 cut(s)	105, 148, 442, 490
BstSFI	CTRYAG	1 cut(s)	604
BstUI	CGCG	2 cut(s)	23, 300
BstV1I	GCAGC	5 cut(s)	44, 371, 472, 511, 514
BstV2I	GAAGAC	2 cut(s)	173, 251
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
Cac8I	GCNNGC	3 cut(s)	43, 114, 532
CfoI	GCGC	2 cut(s)	23, 332
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	62
CseI	GACGC	2 cut(s)	221, 306
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	7 cut(s)	35, 134, 338, 362, 485, 524, 534
CviKI_1	RGCY	7 cut(s)	35, 134, 338, 362, 485, 524, 534
DdeI	CTNAG	2 cut(s)	276, 426
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	2 cut(s)	86, 200
DpnII	GATC	2 cut(s)	84, 198
EciI	GGCGGA	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	105
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
FaeI	CATG	1 cut(s)	116
FaiI	YATR	4 cut(s)	90, 114, 467, 582
FatI	CATG	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	603
Fnu4HI	GCNGC	9 cut(s)	33, 58, 216, 219, 360, 373, 486, 525, 528
Fsp4HI	GCNGC	9 cut(s)	33, 58, 216, 219, 360, 373, 486, 525, 528
GlaI	GCGC	2 cut(s)	22, 331
GluI	GCNGC	9 cut(s)	33, 58, 216, 219, 360, 373, 486, 525, 528
HaeII	RGCGCY	1 cut(s)	333
HapII	CCGG	7 cut(s)	42, 150, 177, 333, 366, 444, 492
HgaI	GACGC	2 cut(s)	221, 306
HhaI	GCGC	2 cut(s)	23, 332
Hin1I	GRCGYC	2 cut(s)	213, 330
Hin1II	CATG	1 cut(s)	116
Hin6I	GCGC	2 cut(s)	21, 330
HinP1I	GCGC	2 cut(s)	21, 330
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	234
HpaII	CCGG	7 cut(s)	42, 150, 177, 333, 366, 444, 492
HphI	GGTGA	2 cut(s)	208, 407
Hpy166II	GTNNAC	3 cut(s)	211, 325, 604
Hpy188I	TCNGA	2 cut(s)	225, 283
Hpy188III	TCNNGA	3 cut(s)	202, 366, 545
Hpy8I	GTNNAC	3 cut(s)	211, 325, 604
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 38, 227
HpyF3I	CTNAG	2 cut(s)	276, 426
Hsp92I	GRCGYC	2 cut(s)	213, 330
Hsp92II	CATG	1 cut(s)	116
HspAI	GCGC	2 cut(s)	21, 330
KasI	GGCGCC	1 cut(s)	329
Kpn2I	TCCGGA	1 cut(s)	365
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	84, 198
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	5 cut(s)	44, 371, 472, 511, 514
LweI	GCATC	2 cut(s)	28, 163
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	2 cut(s)	86, 200
MbiI	CCGCTC	1 cut(s)	221
MboI	GATC	2 cut(s)	84, 198
MflI	RGATCY	1 cut(s)	84
MluCI	AATT	3 cut(s)	565, 593, 610
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	261
MroI	TCCGGA	1 cut(s)	365
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	1 cut(s)	81
MspI	CCGG	7 cut(s)	42, 150, 177, 333, 366, 444, 492
MspR9I	CCNGG	4 cut(s)	107, 150, 444, 492
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	2 cut(s)	23, 300
MwoI	GCNNNNNNNGC	3 cut(s)	29, 38, 227
NaeI	GCCGGC	1 cut(s)	43
NarI	GGCGCC	1 cut(s)	330
NciI	CCSGG	3 cut(s)	150, 444, 492
NdeII	GATC	2 cut(s)	84, 198
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	1 cut(s)	116
NlaIV	GGNNCC	2 cut(s)	331, 337
NmuCI	GTSAC	1 cut(s)	395
NspI	RCATGY	1 cut(s)	116
PaeI	GCATGC	1 cut(s)	116
PaeR7I	CTCGAG	1 cut(s)	236
PdiI	GCCGGC	1 cut(s)	43
PkrI	GCNGC	9 cut(s)	34, 59, 217, 220, 361, 374, 487, 526, 529
PleI	GAGTC	1 cut(s)	228
PluTI	GGCGCC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	331, 337
PspPI	GGNCC	1 cut(s)	62
PspXI	VCTCGAGB	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	9 cut(s)	33, 58, 216, 219, 360, 373, 486, 525, 528
Sau3AI	GATC	2 cut(s)	84, 198
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	4 cut(s)	107, 150, 444, 492
SfaNI	GCATC	2 cut(s)	28, 163
SfcI	CTRYAG	1 cut(s)	604
SfoI	GGCGCC	1 cut(s)	331
Sfr274I	CTCGAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SphI	GCATGC	1 cut(s)	116
Sse9I	AATT	3 cut(s)	565, 593, 610
SsiI	CCGC	6 cut(s)	57, 60, 216, 219, 300, 372
SspDI	GGCGCC	1 cut(s)	329
StyD4I	CCNGG	4 cut(s)	105, 148, 442, 490
TaaI	ACNGT	1 cut(s)	608
TaqI	TCGA	3 cut(s)	237, 570, 576
TasI	AATT	3 cut(s)	565, 593, 610
TauI	GCSGC	4 cut(s)	60, 218, 221, 375
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	5 cut(s)	32, 359, 485, 524, 527
Tsp45I	GTSAC	1 cut(s)	395
TspGWI	ACGGA	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	565
XceI	RCATGY	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.