RLG00000024284

Axoneme-associated protein mst101(2)-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
34085594 .. 34087280
1687 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024284

Sequence Viewer

Length: 1047 bp
ATGGGCGAGAAAGTGGAAGGCGCGAAGAATGAGGGCGAGAAGAAGGCCGCCGACGCCGGAAAGAAGGTCGACGGCGGCCCTCCCACTGTCGTTTTTAAGACCGACATGCATTGCGAGGGATGCGCCAAGAAAATCAAACGAGCTGTCAAACACTTCCCTGGTGTTGAACAAGTGAAGACAGATGCCGGAGCCAACAAACTGACGGTGACCGGGAAAGTGGACGCCGCCGCTCTGAAGGCGAAACTCGAGGAGAGGATTAGGAAGAAGGTCGACCTCGTCTCTCCTCAGCCGGCCAAAAAGGAAGGAGGCGGTGAAGGAGGAGGAGACAAAAAGAAGGCGGAGGAAAAGTCCGAAAAGCCCTCGGAGAAGAAAGCCGAGGAGAAAAAGCCGGCCGATAAGCCCAAAGAGAAAGAGGCCCCCAAAGAGAGCACGGTCGCTTTGAAGATCCGGTTGCATTGCGAGGGTTGCATCCAGAAGATGCGCAGTAAAATCTTGAAGTTCAAAGGTGTTAGTACGGTGGCCTTCGACATGGCCAAAGATCTGGTCACGGTGGTGGGCACGATGGACACCAAAGCACTAGTTCCCTATCTGTCCGAGAAGTTCAAGAGACCGGTCGACGTGATCGCGCCGGCGAAGAAGGACGACGGCGCCGGAGCCAAGAAAGATGATAAGAAAGCAGCTGCCGGAGGCGGCGAGAAGAAAGAAGGAGGTGGTGACAAGAAGGAAGAAAAGAAAGAGGGAAAGAAGGAAGCTGCCCCCGGAGGCGGTGGAGGCGAGAAGAAAGAAGCTGCTGCTGCTGCCGGCGGCGGTGGAGGCGTGGTGGTGAACAAAATGGAGCATTCCGGTTACCCTTACGCGGCGTCGACGTCGTACTGGTACGACCCCGCACACGTTTACAACCACAACAAGTTTGTGATGGAGGCTCAGGAGCACCAGGCGCATGTTAGCCAAGGGTACGGGAACTACAACTACGCAATGCCCATGGAGCACTACCCTGCGCCGCAGATGTTCAGCGACGAGAACCCCAATGGTTGTTCGGTGATGTGA

Protein Analysis

349

Amino Acids

37.14

Weight (kDa)

9.17

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 31 - 88 7.6e-15 Heavy-metal-associated domain
HMA PF00403 149 - 194 3.5e-09 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 869
Acc16I TGCGCA 1 cut(s) 482
AccB1I GGYRCC 1 cut(s) 647
AccBSI CCGCTC 1 cut(s) 230
AccI GTMKAC 4 cut(s) 69, 270, 615, 863
AccII CGCG 3 cut(s) 23, 626, 857
AclWI GGATC 1 cut(s) 439
AcoI YGGCCR 3 cut(s) 291, 390, 531
AcuI CTGAAG 1 cut(s) 254
AcyI GRCGYC 5 cut(s) 54, 222, 648, 860, 866
AfaI GTAC 4 cut(s) 514, 872, 878, 956
AfiI CCNNNNNNNGG 2 cut(s) 764, 856
AflIII ACRYGT 1 cut(s) 889
AgeI ACCGGT 1 cut(s) 610
AgsI TTSAA 5 cut(s) 167, 442, 496, 502, 604
AhlI ACTAGT 1 cut(s) 577
AjiI CACGTC 1 cut(s) 619
AjnI CCWGG 2 cut(s) 157, 933
AleI CACNNNNGTG 1 cut(s) 551
AluBI AGCT 4 cut(s) 143, 680, 752, 788
AluI AGCT 4 cut(s) 143, 680, 752, 788
Alw21I GWGCWC 3 cut(s) 431, 933, 990
Alw26I GTCTC 3 cut(s) 283, 318, 601
AlwI GGATC 1 cut(s) 439
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 7 cut(s) 45, 76, 291, 390, 414, 519, 531
ApeKI GCWGC 7 cut(s) 677, 680, 752, 788, 791, 794, 797
ArsI GACNNNNNNTTYG 4 cut(s) 129, 161, 528, 560
AsiGI ACCGGT 1 cut(s) 610
AspLEI GCGC 7 cut(s) 23, 125, 483, 628, 650, 940, 1000
AspS9I GGNCC 2 cut(s) 77, 415
AsuC2I CCSGG 2 cut(s) 211, 759
AsuHPI GGTGA 4 cut(s) 217, 323, 725, 835
AvaI CYCGRG 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 560
BalI TGGCCA 1 cut(s) 533
BanI GGYRCC 1 cut(s) 647
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 3 cut(s) 431, 933, 990
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 7 cut(s) 667, 689, 739, 775, 778, 781, 784
BccI CCATC 2 cut(s) 556, 910
BceAI ACGGC 2 cut(s) 88, 661
BciT130I CCWGG 2 cut(s) 159, 935
BcnI CCSGG 2 cut(s) 211, 759
BcoDI GTCTC 3 cut(s) 283, 318, 601
BcuI ACTAGT 1 cut(s) 577
BfaI CTAG 1 cut(s) 578
BfoI RGCGCY 1 cut(s) 651
BglII AGATCT 1 cut(s) 538
Bme1390I CCNGG 4 cut(s) 159, 211, 759, 935
BmeT110I CYCGRG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 619
BmgT120I GGNCC 2 cut(s) 77, 415
BmiI GGNNCC 4 cut(s) 190, 417, 649, 655
BmrFI CCNGG 4 cut(s) 159, 211, 759, 935
BmsI GCATC 4 cut(s) 110, 172, 468, 477
BpiI GAAGAC 1 cut(s) 182
Bpu10I CCTNAGC 2 cut(s) 285, 924
BpuMI CCSGG 2 cut(s) 211, 759
BsaHI GRCGYC 5 cut(s) 54, 222, 648, 860, 866
BsaI GGTCTC 1 cut(s) 601
BsaJI CCNNGG 6 cut(s) 157, 360, 375, 757, 949, 981
BsaWI WCCGGW 3 cut(s) 447, 610, 842
BsaXI ACNNNNNCTCC 4 cut(s) 332, 362, 804, 834
Bsc4I CCNNNNNNNGG 2 cut(s) 764, 856
Bse118I RCCGGY 5 cut(s) 289, 388, 610, 628, 800
Bse1I ACTGG 1 cut(s) 878
Bse3DI GCAATG 3 cut(s) 109, 454, 981
BseBI CCWGG 2 cut(s) 159, 935
BseDI CCNNGG 6 cut(s) 157, 360, 375, 757, 949, 981
BseGI GGATG 2 cut(s) 125, 468
BseLI CCNNNNNNNGG 2 cut(s) 764, 856
BseMI GCAATG 3 cut(s) 109, 454, 981
BseMII CTCAG 2 cut(s) 299, 938
BseNI ACTGG 1 cut(s) 878
BseRI GAGGAG 5 cut(s) 263, 273, 333, 336, 392
BseSI GKGCMC 1 cut(s) 560
BseX3I CGGCCG 1 cut(s) 390
BseXI GCAGC 7 cut(s) 667, 689, 739, 775, 778, 781, 784
Bsh1236I CGCG 3 cut(s) 23, 626, 857
Bsh1285I CGRYCG 3 cut(s) 393, 435, 615
BshFI GGCC 7 cut(s) 47, 78, 293, 392, 416, 521, 533
BshNI GGYRCC 1 cut(s) 647
BshTI ACCGGT 1 cut(s) 610
BsiEI CGRYCG 3 cut(s) 393, 435, 615
BsiHKAI GWGCWC 3 cut(s) 431, 933, 990
BsiHKCI CYCGRG 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 764, 856
BsmAI GTCTC 3 cut(s) 283, 318, 601
BsmBI CGTCTC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 838
BsnI GGCC 7 cut(s) 47, 78, 293, 392, 416, 521, 533
Bso31I GGTCTC 1 cut(s) 601
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 4 cut(s) 431, 560, 933, 990
Bsp143I GATC 3 cut(s) 444, 538, 621
Bsp19I CCATGG 1 cut(s) 981
BspANI GGCC 7 cut(s) 47, 78, 293, 392, 416, 521, 533
BspCNI CTCAG 2 cut(s) 298, 937
BspFNI CGCG 3 cut(s) 23, 626, 857
BspLI GGNNCC 4 cut(s) 190, 417, 649, 655
BspPI GGATC 1 cut(s) 439
BspT107I GGYRCC 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 601
BsrBI CCGCTC 1 cut(s) 230
BsrDI GCAATG 3 cut(s) 109, 454, 981
BsrFI RCCGGY 5 cut(s) 289, 388, 610, 628, 800
BsrI ACTGG 1 cut(s) 878
BssAI RCCGGY 5 cut(s) 289, 388, 610, 628, 800
BssECI CCNNGG 6 cut(s) 157, 360, 375, 757, 949, 981
BssMI GATC 3 cut(s) 444, 538, 621
BssNI GRCGYC 5 cut(s) 54, 222, 648, 860, 866
BssT1I CCWWGG 2 cut(s) 949, 981
Bst2UI CCWGG 2 cut(s) 159, 935
Bst4CI ACNGT 5 cut(s) 88, 205, 433, 517, 550
BstACI GRCGYC 5 cut(s) 54, 222, 648, 860, 866
BstC8I GCNNGC 4 cut(s) 291, 390, 630, 802
BstDEI CTNAG 2 cut(s) 285, 924
BstDSI CCRYGG 1 cut(s) 981
BstEII GGTNACC 2 cut(s) 205, 845
BstF5I GGATG 2 cut(s) 125, 468
BstFNI CGCG 3 cut(s) 23, 626, 857
BstH2I RGCGCY 1 cut(s) 651
BstHHI GCGC 7 cut(s) 23, 125, 483, 628, 650, 940, 1000
BstKTI GATC 3 cut(s) 447, 541, 624
BstMAI GTCTC 3 cut(s) 283, 318, 601
BstMBI GATC 3 cut(s) 444, 538, 621
BstMCI CGRYCG 3 cut(s) 393, 435, 615
BstNI CCWGG 2 cut(s) 159, 935
BstNSI RCATGY 2 cut(s) 109, 944
BstPI GGTNACC 2 cut(s) 205, 845
BstSCI CCNGG 4 cut(s) 157, 209, 757, 933
BstSLI GKGCMC 1 cut(s) 560
BstUI CGCG 3 cut(s) 23, 626, 857
BstV1I GCAGC 7 cut(s) 667, 689, 739, 775, 778, 781, 784
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 2 cut(s) 444, 538
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 2 cut(s) 444, 538
BstZI CGGCCG 1 cut(s) 390
BsuRI GGCC 7 cut(s) 47, 78, 293, 392, 416, 521, 533
BtgI CCRYGG 1 cut(s) 981
BtrI CACGTC 1 cut(s) 619
BtsCI GGATG 2 cut(s) 125, 468
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 4 cut(s) 291, 390, 630, 802
CfoI GCGC 7 cut(s) 23, 125, 483, 628, 650, 940, 1000
Cfr10I RCCGGY 5 cut(s) 289, 388, 610, 628, 800
Cfr13I GGNCC 2 cut(s) 77, 415
CseI GACGC 3 cut(s) 62, 230, 849
Csp6I GTAC 4 cut(s) 513, 871, 877, 955
CspAI ACCGGT 1 cut(s) 610
CviAII CATG 4 cut(s) 106, 529, 941, 982
CviQI GTAC 4 cut(s) 513, 871, 877, 955
DdeI CTNAG 2 cut(s) 285, 924
DinI GGCGCC 1 cut(s) 649
DpnI GATC 3 cut(s) 446, 540, 623
DpnII GATC 3 cut(s) 444, 538, 621
EaeI YGGCCR 3 cut(s) 291, 390, 531
EagI CGGCCG 1 cut(s) 390
EciI GGCGGA 1 cut(s) 353
EclXI CGGCCG 1 cut(s) 390
Eco130I CCWWGG 2 cut(s) 949, 981
Eco31I GGTCTC 1 cut(s) 601
Eco52I CGGCCG 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 245
Eco91I GGTNACC 2 cut(s) 205, 845
EcoO109I RGGNCCY 1 cut(s) 415
EcoO65I GGTNACC 2 cut(s) 205, 845
EcoRII CCWGG 2 cut(s) 157, 933
EcoT14I CCWWGG 2 cut(s) 949, 981
EcoT22I ATGCAT 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 649
EheI GGCGCC 1 cut(s) 649
ErhI CCWWGG 2 cut(s) 949, 981
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 4 cut(s) 109, 532, 944, 985
FaiI YATR 4 cut(s) 107, 530, 942, 983
FatI CATG 4 cut(s) 105, 528, 940, 981
FauI CCCGC 1 cut(s) 892
FblI GTMKAC 4 cut(s) 69, 270, 615, 863
FokI GGATG 2 cut(s) 132, 455
FspBI CTAG 1 cut(s) 578
FspI TGCGCA 1 cut(s) 482
GlaI GCGC 7 cut(s) 22, 124, 482, 627, 649, 939, 999
HaeII RGCGCY 1 cut(s) 651
HaeIII GGCC 7 cut(s) 47, 78, 293, 392, 416, 521, 533
HgaI GACGC 3 cut(s) 62, 230, 849
HhaI GCGC 7 cut(s) 23, 125, 483, 628, 650, 940, 1000
Hin1I GRCGYC 5 cut(s) 54, 222, 648, 860, 866
Hin1II CATG 4 cut(s) 109, 532, 944, 985
Hin6I GCGC 7 cut(s) 21, 123, 481, 626, 648, 938, 998
HinP1I GCGC 7 cut(s) 21, 123, 481, 626, 648, 938, 998
HincII GTYRAC 4 cut(s) 70, 271, 616, 864
HindII GTYRAC 4 cut(s) 70, 271, 616, 864
HphI GGTGA 4 cut(s) 217, 323, 725, 835
Hpy166II GTNNAC 7 cut(s) 70, 220, 271, 616, 826, 864, 895
Hpy188I TCNGA 4 cut(s) 234, 352, 364, 595
Hpy188III TCNNGA 4 cut(s) 472, 493, 604, 926
Hpy8I GTNNAC 7 cut(s) 70, 220, 271, 616, 826, 864, 895
Hpy99I CGWCG 8 cut(s) 56, 74, 620, 647, 865, 868, 871, 1019
HpyCH4III ACNGT 5 cut(s) 88, 205, 433, 517, 550
HpyCH4IV ACGT 3 cut(s) 618, 866, 891
HpyCH4V TGCA 3 cut(s) 109, 454, 468
HpyF3I CTNAG 2 cut(s) 285, 924
HpySE526I ACGT 3 cut(s) 618, 866, 891
Hsp92I GRCGYC 5 cut(s) 54, 222, 648, 860, 866
Hsp92II CATG 4 cut(s) 109, 532, 944, 985
HspAI GCGC 7 cut(s) 21, 123, 481, 626, 648, 938, 998
KasI GGCGCC 1 cut(s) 647
KroI GCCGGC 4 cut(s) 289, 388, 628, 800
KroNI GCCGGC 4 cut(s) 291, 390, 630, 802
Kzo9I GATC 3 cut(s) 444, 538, 621
LmnI GCTCC 5 cut(s) 188, 653, 835, 928, 985
Lsp1109I GCAGC 7 cut(s) 667, 689, 739, 775, 778, 781, 784
LweI GCATC 4 cut(s) 110, 172, 468, 477
MaeI CTAG 1 cut(s) 578
MaeII ACGT 3 cut(s) 618, 866, 891
MaeIII GTNAC 4 cut(s) 205, 544, 713, 845
MalI GATC 3 cut(s) 446, 540, 623
MbiI CCGCTC 1 cut(s) 230
MboI GATC 3 cut(s) 444, 538, 621
MflI RGATCY 2 cut(s) 444, 538
MhlI GDGCHC 4 cut(s) 431, 560, 933, 990
MlsI TGGCCA 1 cut(s) 533
MluNI TGGCCA 1 cut(s) 533
Mly113I GGCGCC 1 cut(s) 648
Mox20I TGGCCA 1 cut(s) 533
Mph1103I ATGCAT 1 cut(s) 111
MreI CGCCGGCG 1 cut(s) 628
MroNI GCCGGC 4 cut(s) 289, 388, 628, 800
MscI TGGCCA 1 cut(s) 533
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 680
MspR9I CCNGG 4 cut(s) 159, 211, 759, 935
Mva1269I GAATGC 1 cut(s) 838
MvaI CCWGG 2 cut(s) 159, 935
MvnI CGCG 3 cut(s) 23, 626, 857
NaeI GCCGGC 4 cut(s) 291, 390, 630, 802
NarI GGCGCC 1 cut(s) 648
NciI CCSGG 2 cut(s) 211, 759
NcoI CCATGG 1 cut(s) 981
NdeII GATC 3 cut(s) 444, 538, 621
NgoMIV GCCGGC 4 cut(s) 289, 388, 628, 800
NlaIII CATG 4 cut(s) 109, 532, 944, 985
NlaIV GGNNCC 4 cut(s) 190, 417, 649, 655
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 3 cut(s) 205, 544, 713
NsbI TGCGCA 1 cut(s) 482
NsiI ATGCAT 1 cut(s) 111
NspI RCATGY 2 cut(s) 109, 944
OliI CACNNNNGTG 1 cut(s) 551
PaeR7I CTCGAG 1 cut(s) 245
PctI GAATGC 1 cut(s) 838
PdiI GCCGGC 4 cut(s) 291, 390, 630, 802
PflFI GACNNNGTC 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 610
PluTI GGCGCC 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 157, 933
PspEI GGTNACC 2 cut(s) 205, 845
PspGI CCWGG 2 cut(s) 157, 933
PspN4I GGNNCC 4 cut(s) 190, 417, 649, 655
PspPI GGNCC 2 cut(s) 77, 415
PspXI VCTCGAGB 1 cut(s) 245
PsrI GAACNNNNNNTAC 2 cut(s) 953, 985
PsuI RGATCY 2 cut(s) 444, 538
PsyI GACNNNGTC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 680
RsaI GTAC 4 cut(s) 514, 872, 878, 956
RsaNI GTAC 4 cut(s) 513, 871, 877, 955
RseI CAYNNNNRTG 1 cut(s) 551
SalI GTCGAC 4 cut(s) 68, 269, 614, 862
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 3 cut(s) 444, 538, 621
Sau96I GGNCC 2 cut(s) 77, 415
ScrFI CCNGG 4 cut(s) 159, 211, 759, 935
SduI GDGCHC 4 cut(s) 431, 560, 933, 990
SfaNI GCATC 4 cut(s) 110, 172, 468, 477
SfoI GGCGCC 1 cut(s) 649
Sfr274I CTCGAG 1 cut(s) 245
SgrAI CRCCGGYG 1 cut(s) 628
SgrDI CGTCGACG 1 cut(s) 862
SlaI CTCGAG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SpeI ACTAGT 1 cut(s) 577
SspDI GGCGCC 1 cut(s) 647
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 4 cut(s) 157, 209, 757, 933
StyI CCWWGG 2 cut(s) 949, 981
TaaI ACNGT 5 cut(s) 88, 205, 433, 517, 550
TaiI ACGT 3 cut(s) 621, 869, 894
TaqI TCGA 6 cut(s) 69, 246, 270, 525, 615, 863
TaqII GACCGA 1 cut(s) 116
TauI GCSGC 8 cut(s) 50, 78, 227, 230, 693, 807, 860, 1003
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 3 cut(s) 205, 544, 713
TseI GCWGC 7 cut(s) 677, 680, 752, 788, 791, 794, 797
Tsp45I GTSAC 3 cut(s) 205, 544, 713
TspRI CASTG 1 cut(s) 91
Tth111I GACNNNGTC 1 cut(s) 275
XceI RCATGY 2 cut(s) 109, 944
XhoI CTCGAG 1 cut(s) 245
XmiI GTMKAC 4 cut(s) 69, 270, 615, 863
XspI CTAG 1 cut(s) 578
ZraI GACGTC 1 cut(s) 867
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.