Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005600.1

Orthogroup ID

OG0006291

Physical Location & Seq

Genomic Coordinates Reverse (-)

79667 .. 81710

Gene Structure 2044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005600.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgggcgagaaagtggaaggcgcgaagaaggcggccgatgccggcaagaagaaggtcgacggcggaccacccactttcgtttttaagatcgataggcattgcgagtgccaggggcatgccgacgaaatcataaaagctgtcaaagacttccccggcgttgaacgagtggagatagatgccggaggcaacaaactgaaggtgatcgggaaagtggacgccgccgctctgaaggcgagactcgagcagaagactaagaagaaggttgaactcgtctctcctcagtcggccaaaaaggaaggacgcggtggaggagcaggaggaggagacaagaagaaggacaacggcgccggagccaagaaagatgataagaaagcagttgccggaggcggcaagaagaaagacggaggtgttgacaagaagaaagggagagaggaggaaactacccccggaggcaagaagaaagacagcggtggtgataagaaggaagacaagaaagggggaaagaaggaagttgcccccggaggcaagaagaaagacggcggtggtgataagaaggaagacaagaaagggggaaagaaggaagttgcccccggaggcaagaagaaagacggcggtggtggcaagaaggaagctgcccccagagccttggtaaaggaagctgctggcggcgtggtcagaactcgtgagaaggagggtaaaatacatctcacggtaaatccgacgacacttagtctcaccctactactaggcggcagcgcccatttgatgaagcaaataactcgccgtcgacctaaagcagacaaggcacttagagtgcacacacatgcatataacccgactagccctacacgacaaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

286

Amino Acids

29.93

Weight (kDa)

9.97

Isoelectric Point (pI)

28.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36950 AT5G03380 AT5G03380
fragaria_vesca	FvH4_6g16410 FvH4_6g16410
malus_domestica	MD04G1093300.v1.1 MD12G1113000.v1.1
prunus_persica	Prupe.6G232100_v2.0.a1 Prupe.6G232100_v2.0.a1
pyrus_communis	pycom04g08830 pycom12g11200
rosa_chinensis	RchiOBHm_Chr3g0470271
rosa_laevigata	RLG00000024284 RLG00000024290
rosa_multiflora	Rmu_co8443661.1_g000001 Rmu_sc0005600.1_g000019 Rmu_sc0011073.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411000 Rroxscaffold_6G00411110
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh1AG099300 Rh3AG157500 Rh3BG181600 Rh3CG172400 Rh3DG193300
rosa_wichuraiana	Rw3G014860 Rw3G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AccBSI	CCGCTC	1 cut(s)	224
AccI	GTMKAC	2 cut(s)	57, 787
AccII	CGCG	2 cut(s)	23, 303
AcoI	YGGCCR	2 cut(s)	33, 285
AcuI	CTGAAG	2 cut(s)	215, 248
AcyI	GRCGYC	2 cut(s)	216, 345
AgsI	TTSAA	2 cut(s)	161, 266
AhdI	GACNNNNNGTC	1 cut(s)	729
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	137, 632, 659
AluI	AGCT	3 cut(s)	137, 632, 659
Alw21I	GWGCWC	1 cut(s)	819
Alw26I	GTCTC	4 cut(s)	229, 277, 318, 737
Alw44I	GTGCAC	1 cut(s)	815
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	2 cut(s)	33, 285
ApaLI	GTGCAC	1 cut(s)	815
ApeKI	GCWGC	3 cut(s)	632, 659, 753
AspLEI	GCGC	3 cut(s)	23, 347, 758
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	4 cut(s)	153, 447, 519, 591
AsuHPI	GGTGA	4 cut(s)	211, 485, 557, 727
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	819
BanI	GGYRCC	1 cut(s)	344
BauI	CACGAG	1 cut(s)	681
BbsI	GAAGAC	3 cut(s)	254, 492, 564
Bbv12I	GWGCWC	1 cut(s)	819
BbvI	GCAGC	3 cut(s)	619, 646, 765
BceAI	ACGGC	5 cut(s)	76, 358, 553, 625, 768
BcgI	CGANNNNNNTGC	2 cut(s)	761, 795
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	4 cut(s)	153, 447, 519, 591
BcoDI	GTCTC	4 cut(s)	229, 277, 318, 737
BfaI	CTAG	2 cut(s)	746, 840
BfoI	RGCGCY	2 cut(s)	348, 759
BisI	GCNGC	9 cut(s)	33, 219, 222, 388, 633, 660, 667, 751, 754
BlsI	GCNGC	9 cut(s)	34, 220, 223, 389, 634, 661, 668, 752, 755
Bme1390I	CCNGG	5 cut(s)	110, 153, 447, 519, 591
Bme18I	GGWCC	1 cut(s)	65
BmeRI	GACNNNNNGTC	1 cut(s)	729
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	346, 352
BmrFI	CCNGG	5 cut(s)	110, 153, 447, 519, 591
BmsI	GCATC	2 cut(s)	28, 166
BpiI	GAAGAC	3 cut(s)	254, 492, 564
BpuMI	CCSGG	4 cut(s)	153, 447, 519, 591
Bsa29I	ATCGAT	1 cut(s)	90
BsaHI	GRCGYC	2 cut(s)	216, 345
BsaJI	CCNNGG	6 cut(s)	109, 151, 445, 517, 589, 645
Bse118I	RCCGGY	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	6 cut(s)	109, 151, 445, 517, 589, 645
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	293
BseRI	GAGGAG	5 cut(s)	267, 324, 333, 336, 446
BseSI	GKGCMC	1 cut(s)	819
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	619, 646, 765
Bsh1236I	CGCG	2 cut(s)	23, 303
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	35, 287
BshNI	GGYRCC	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	819
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	8 cut(s)	42, 153, 180, 348, 381, 447, 519, 591
BsmAI	GTCTC	4 cut(s)	229, 277, 318, 737
BsmBI	CGTCTC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	35, 287
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	819
Bsp143I	GATC	2 cut(s)	87, 201
BspANI	GGCC	2 cut(s)	35, 287
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	90
BspFNI	CGCG	2 cut(s)	23, 303
BspLI	GGNNCC	2 cut(s)	346, 352
BspT107I	GGYRCC	1 cut(s)	344
BsrBI	CCGCTC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	6 cut(s)	109, 151, 445, 517, 589, 645
BssMI	GATC	2 cut(s)	87, 201
BssNI	GRCGYC	2 cut(s)	216, 345
BssSI	CACGAG	1 cut(s)	681
BssT1I	CCWWGG	1 cut(s)	645
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	712
BstACI	GRCGYC	2 cut(s)	216, 345
BstC8I	GCNNGC	3 cut(s)	43, 117, 664
BstDEI	CTNAG	4 cut(s)	252, 279, 728, 809
BstFNI	CGCG	2 cut(s)	23, 303
BstH2I	RGCGCY	2 cut(s)	348, 759
BstHHI	GCGC	3 cut(s)	23, 347, 758
BstKTI	GATC	2 cut(s)	90, 204
BstMAI	GTCTC	4 cut(s)	229, 277, 318, 737
BstMBI	GATC	2 cut(s)	87, 201
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 38, 230, 618, 641, 803
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	2 cut(s)	119, 827
BstSCI	CCNGG	5 cut(s)	108, 151, 445, 517, 589
BstSLI	GKGCMC	1 cut(s)	819
BstUI	CGCG	2 cut(s)	23, 303
BstV1I	GCAGC	3 cut(s)	619, 646, 765
BstV2I	GAAGAC	3 cut(s)	254, 492, 564
BstXI	CCANNNNNNTGG	1 cut(s)	646
BstZI	CGGCCG	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	35, 287
BsuTUI	ATCGAT	1 cut(s)	90
Cac8I	GCNNGC	3 cut(s)	43, 117, 664
CfoI	GCGC	3 cut(s)	23, 347, 758
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	65
ClaI	ATCGAT	1 cut(s)	90
CseI	GACGC	2 cut(s)	224, 309
CviAII	CATG	2 cut(s)	116, 824
CviJI	RGCY	8 cut(s)	35, 137, 287, 353, 632, 644, 659, 843
CviKI_1	RGCY	8 cut(s)	35, 137, 287, 353, 632, 644, 659, 843
DdeI	CTNAG	4 cut(s)	252, 279, 728, 809
DinI	GGCGCC	1 cut(s)	346
DpnI	GATC	2 cut(s)	89, 203
DpnII	GATC	2 cut(s)	87, 201
DriI	GACNNNNNGTC	1 cut(s)	729
EaeI	YGGCCR	2 cut(s)	33, 285
EagI	CGGCCG	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	729
EciI	GGCGGA	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	65
Eco52I	CGGCCG	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	215, 248
Eco88I	CYCGRG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	645
EcoT22I	ATGCAT	1 cut(s)	829
EgeI	GGCGCC	1 cut(s)	346
EheI	GGCGCC	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	2 cut(s)	119, 827
FaiI	YATR	5 cut(s)	117, 131, 825, 829, 831
FatI	CATG	2 cut(s)	115, 823
FblI	GTMKAC	2 cut(s)	57, 787
Fnu4HI	GCNGC	9 cut(s)	33, 219, 222, 388, 633, 660, 667, 751, 754
Fsp4HI	GCNGC	9 cut(s)	33, 219, 222, 388, 633, 660, 667, 751, 754
FspBI	CTAG	2 cut(s)	746, 840
GlaI	GCGC	3 cut(s)	22, 346, 757
GluI	GCNGC	9 cut(s)	33, 219, 222, 388, 633, 660, 667, 751, 754
HaeII	RGCGCY	2 cut(s)	348, 759
HaeIII	GGCC	2 cut(s)	35, 287
HapII	CCGG	8 cut(s)	42, 153, 180, 348, 381, 447, 519, 591
HgaI	GACGC	2 cut(s)	224, 309
HhaI	GCGC	3 cut(s)	23, 347, 758
Hin1I	GRCGYC	2 cut(s)	216, 345
Hin1II	CATG	2 cut(s)	119, 827
Hin6I	GCGC	3 cut(s)	21, 345, 756
HinP1I	GCGC	3 cut(s)	21, 345, 756
HincII	GTYRAC	3 cut(s)	58, 412, 788
HindII	GTYRAC	3 cut(s)	58, 412, 788
HinfI	GANTC	1 cut(s)	237
HpaII	CCGG	8 cut(s)	42, 153, 180, 348, 381, 447, 519, 591
HphI	GGTGA	4 cut(s)	211, 485, 557, 727
Hpy166II	GTNNAC	5 cut(s)	58, 214, 412, 788, 817
Hpy188I	TCNGA	3 cut(s)	228, 677, 720
Hpy188III	TCNNGA	2 cut(s)	205, 683
Hpy8I	GTNNAC	5 cut(s)	58, 214, 412, 788, 817
Hpy99I	CGWCG	4 cut(s)	62, 125, 724, 789
HpyCH4III	ACNGT	1 cut(s)	712
HpyCH4V	TGCA	2 cut(s)	817, 827
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 38, 230, 618, 641, 803
HpyF3I	CTNAG	4 cut(s)	252, 279, 728, 809
Hsp92I	GRCGYC	2 cut(s)	216, 345
Hsp92II	CATG	2 cut(s)	119, 827
HspAI	GCGC	3 cut(s)	21, 345, 756
KasI	GGCGCC	1 cut(s)	344
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	87, 201
LmnI	GCTCC	2 cut(s)	311, 350
Lsp1109I	GCAGC	3 cut(s)	619, 646, 765
LweI	GCATC	2 cut(s)	28, 166
MaeI	CTAG	2 cut(s)	746, 840
MalI	GATC	2 cut(s)	89, 203
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	2 cut(s)	87, 201
MhlI	GDGCHC	1 cut(s)	819
Mly113I	GGCGCC	1 cut(s)	345
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	743
Mph1103I	ATGCAT	1 cut(s)	829
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	822
MspA1I	CMGCKG	1 cut(s)	468
MspI	CCGG	8 cut(s)	42, 153, 180, 348, 381, 447, 519, 591
MspR9I	CCNGG	5 cut(s)	110, 153, 447, 519, 591
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	2 cut(s)	23, 303
MwoI	GCNNNNNNNGC	6 cut(s)	29, 38, 230, 618, 641, 803
NaeI	GCCGGC	1 cut(s)	43
NarI	GGCGCC	1 cut(s)	345
NciI	CCSGG	4 cut(s)	153, 447, 519, 591
NdeII	GATC	2 cut(s)	87, 201
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	119, 827
NlaIV	GGNNCC	2 cut(s)	346, 352
NsiI	ATGCAT	1 cut(s)	829
NspI	RCATGY	2 cut(s)	119, 827
PaeI	GCATGC	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	716
PdiI	GCCGGC	1 cut(s)	43
PkrI	GCNGC	9 cut(s)	34, 220, 223, 389, 634, 661, 668, 752, 755
PleI	GAGTC	1 cut(s)	231
PluTI	GGCGCC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	346, 352
PspPI	GGNCC	1 cut(s)	65
PspXI	VCTCGAGB	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	822
SalI	GTCGAC	2 cut(s)	56, 786
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	9 cut(s)	33, 219, 222, 388, 633, 660, 667, 751, 754
Sau3AI	GATC	2 cut(s)	87, 201
Sau96I	GGNCC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	5 cut(s)	110, 153, 447, 519, 591
SduI	GDGCHC	1 cut(s)	819
SetI	ASST	8 cut(s)	57, 139, 201, 264, 409, 634, 661, 793
SfaNI	GCATC	2 cut(s)	28, 166
SfoI	GGCGCC	1 cut(s)	346
Sfr274I	CTCGAG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	65
SlaI	CTCGAG	1 cut(s)	239
SmiMI	CAYNNNNRTG	1 cut(s)	822
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SphI	GCATGC	1 cut(s)	119
SspDI	GGCGCC	1 cut(s)	344
SspMI	CTAG	2 cut(s)	746, 840
StyD4I	CCNGG	5 cut(s)	108, 151, 445, 517, 589
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	1 cut(s)	712
TaqI	TCGA	4 cut(s)	57, 90, 240, 787
TauI	GCSGC	6 cut(s)	35, 221, 224, 390, 669, 753
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	3 cut(s)	632, 659, 753
TspDTI	ATGAA	1 cut(s)	782
TspGWI	ACGGA	1 cut(s)	417
VneI	GTGCAC	1 cut(s)	815
VpaK11BI	GGWCC	1 cut(s)	65
XceI	RCATGY	2 cut(s)	119, 827
XhoI	CTCGAG	1 cut(s)	239
XmiI	GTMKAC	2 cut(s)	57, 787
XspI	CTAG	2 cut(s)	746, 840
Zsp2I	ATGCAT	1 cut(s)	829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.