Rroxscaffold_6G00411000

Axoneme-associated protein mst101(2)-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
33531764 .. 33533894
2131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411000.1

Sequence Viewer

Length: 924 bp
ATGGGCGAGAAAGTGGAAGGCGCGAAGAATGAGGGCGAGAAGAAGGCCGCCGACGCCGGAAAGAAGGTCGACGGCGGCCCTCCCACTGTCGTTTTTAAGACCGACATGCATTGCGAGGGATGCGCCAAGAAAATCAAACGAGCTGTCAAACACTTCCCTGGTGTTGAACAAGTGAAGACAGATGCCGGAGCCAACAAACTCACGGTGACCGGGAAAGTGGACGCCGCCGCTCTGAAGGCGAAACTCGAGGAGAGGATTAGGAAGCAGGTCGACCTCGTCTCTCCTCAGCCGGCCAAAAAGGAAGGAGGCGGTGAAGGAGGAGGAGATAAGAAGAAGGCGGAGGAAAAGTCCGAAAAGCCCTCGGACAAGAAAGCCGAGGAGAAAAAGCCGGCCGATAAGCCCAAAGAGAAAGAGGCCCCCAAAGAGAGCACGGTCGCTTTGAAGATCCGGTTGCATTGCGAGGGTTGCATCCAGAAGATGCGCAGTAAAATCTTGAAGTTCAAAGGTGTTAGTACGGTGGCCTTCGACATCTCCAAAGATCTGGTCACGGTGGTGGGCACCATGGACACCAAAGCGCTAGTTCCCTATCTGTCGGAGAAGTTCAAGAGACCGGTCGACGTGATCGCGCCGGCGAAGAAGGACGACGGCGCCGGTGCCAAGAAAGATGATAAGAAAGCAGCCGCCGGAGGTGGTGACAAGAAGGAAGAGAAGAAAGAGGGAAAGAAGGAAGCTGCCCCCGGAGGCGGTGGAGGCGAGAAGAAGGAAGCTGCTGCTGCCGGCGGCGGTGGAGGTGCGATGGTGAACAAAATGGAGCATTCCGGCTACCCTTACGCGGCGTCGACGTCGTACTGGTACGACCCCGCACACGTTTACAACCACACACAAGTTTGTGATGGAGGCTCAGGAGCACCAGGCGCATGTTAG

Protein Analysis

307

Amino Acids

32.22

Weight (kDa)

9.29

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 31 - 87 6.4e-15 Heavy-metal-associated domain
HMA PF00403 149 - 194 2.4e-08 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 845
Acc16I TGCGCA 1 cut(s) 482
Acc36I ACCTGC 1 cut(s) 256
AccB1I GGYRCC 3 cut(s) 557, 647, 653
AccBSI CCGCTC 1 cut(s) 230
AccI GTMKAC 4 cut(s) 69, 270, 615, 839
AccII CGCG 3 cut(s) 23, 626, 833
AclWI GGATC 1 cut(s) 439
AcoI YGGCCR 2 cut(s) 291, 390
AcuI CTGAAG 1 cut(s) 254
AcyI GRCGYC 5 cut(s) 54, 222, 648, 836, 842
AfaI GTAC 3 cut(s) 514, 848, 854
AfeI AGCGCT 1 cut(s) 576
AfiI CCNNNNNNNGG 2 cut(s) 743, 832
AflIII ACRYGT 1 cut(s) 865
AgeI ACCGGT 1 cut(s) 610
AgsI TTSAA 5 cut(s) 167, 442, 496, 502, 604
AjiI CACGTC 1 cut(s) 619
AjnI CCWGG 2 cut(s) 157, 910
AleI CACNNNNGTG 1 cut(s) 551
AluBI AGCT 3 cut(s) 143, 731, 767
AluI AGCT 3 cut(s) 143, 731, 767
Alw21I GWGCWC 2 cut(s) 431, 910
Alw26I GTCTC 2 cut(s) 283, 601
AlwI GGATC 1 cut(s) 439
Ama87I CYCGRG 1 cut(s) 245
Aor51HI AGCGCT 1 cut(s) 576
AoxI GGCC 6 cut(s) 45, 76, 291, 390, 414, 519
ApeKI GCWGC 5 cut(s) 677, 731, 767, 770, 773
ArsI GACNNNNNNTTYG 4 cut(s) 129, 161, 528, 560
AsiGI ACCGGT 1 cut(s) 610
AspLEI GCGC 7 cut(s) 23, 125, 483, 577, 628, 650, 917
AspS9I GGNCC 2 cut(s) 77, 415
AsuC2I CCSGG 2 cut(s) 211, 738
AsuHPI GGTGA 4 cut(s) 217, 323, 704, 811
AvaI CYCGRG 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 560
BanI GGYRCC 3 cut(s) 557, 647, 653
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 431, 910
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 5 cut(s) 689, 718, 754, 757, 760
BccI CCATC 2 cut(s) 790, 887
BceAI ACGGC 2 cut(s) 88, 661
BciT130I CCWGG 2 cut(s) 159, 912
BcnI CCSGG 2 cut(s) 211, 738
BcoDI GTCTC 2 cut(s) 283, 601
BfaI CTAG 1 cut(s) 578
BfoI RGCGCY 2 cut(s) 578, 651
BfuAI ACCTGC 1 cut(s) 256
BglII AGATCT 1 cut(s) 538
Bme1390I CCNGG 4 cut(s) 159, 211, 738, 912
BmeT110I CYCGRG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 619
BmgT120I GGNCC 2 cut(s) 77, 415
BmiI GGNNCC 5 cut(s) 190, 417, 559, 649, 655
BmrFI CCNGG 4 cut(s) 159, 211, 738, 912
BmsI GCATC 4 cut(s) 110, 172, 468, 477
BpiI GAAGAC 1 cut(s) 182
Bpu10I CCTNAGC 2 cut(s) 285, 901
BpuMI CCSGG 2 cut(s) 211, 738
BsaHI GRCGYC 5 cut(s) 54, 222, 648, 836, 842
BsaI GGTCTC 1 cut(s) 601
BsaJI CCNNGG 5 cut(s) 157, 360, 375, 561, 736
BsaWI WCCGGW 2 cut(s) 447, 610
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 743, 832
Bse118I RCCGGY 6 cut(s) 289, 388, 610, 628, 650, 776
Bse1I ACTGG 1 cut(s) 854
Bse3DI GCAATG 2 cut(s) 109, 454
BseBI CCWGG 2 cut(s) 159, 912
BseDI CCNNGG 5 cut(s) 157, 360, 375, 561, 736
BseGI GGATG 2 cut(s) 125, 468
BseLI CCNNNNNNNGG 2 cut(s) 743, 832
BseMI GCAATG 2 cut(s) 109, 454
BseMII CTCAG 2 cut(s) 299, 915
BseNI ACTGG 1 cut(s) 854
BseRI GAGGAG 5 cut(s) 263, 273, 333, 336, 392
BseSI GKGCMC 1 cut(s) 560
BseX3I CGGCCG 1 cut(s) 390
BseXI GCAGC 5 cut(s) 689, 718, 754, 757, 760
Bsh1236I CGCG 3 cut(s) 23, 626, 833
Bsh1285I CGRYCG 3 cut(s) 393, 435, 615
BshFI GGCC 6 cut(s) 47, 78, 293, 392, 416, 521
BshNI GGYRCC 3 cut(s) 557, 647, 653
BshTI ACCGGT 1 cut(s) 610
BsiEI CGRYCG 3 cut(s) 393, 435, 615
BsiHKAI GWGCWC 2 cut(s) 431, 910
BsiHKCI CYCGRG 1 cut(s) 245
BslI CCNNNNNNNGG 2 cut(s) 743, 832
BsmAI GTCTC 2 cut(s) 283, 601
BsmBI CGTCTC 1 cut(s) 283
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 6 cut(s) 47, 78, 293, 392, 416, 521
Bso31I GGTCTC 1 cut(s) 601
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 3 cut(s) 431, 560, 910
Bsp143I GATC 3 cut(s) 444, 538, 621
Bsp19I CCATGG 1 cut(s) 561
BspANI GGCC 6 cut(s) 47, 78, 293, 392, 416, 521
BspCNI CTCAG 2 cut(s) 298, 914
BspFNI CGCG 3 cut(s) 23, 626, 833
BspLI GGNNCC 5 cut(s) 190, 417, 559, 649, 655
BspMI ACCTGC 1 cut(s) 256
BspPI GGATC 1 cut(s) 439
BspT107I GGYRCC 3 cut(s) 557, 647, 653
BspTNI GGTCTC 1 cut(s) 601
BsrBI CCGCTC 1 cut(s) 230
BsrDI GCAATG 2 cut(s) 109, 454
BsrFI RCCGGY 6 cut(s) 289, 388, 610, 628, 650, 776
BsrI ACTGG 1 cut(s) 854
BssAI RCCGGY 6 cut(s) 289, 388, 610, 628, 650, 776
BssECI CCNNGG 5 cut(s) 157, 360, 375, 561, 736
BssMI GATC 3 cut(s) 444, 538, 621
BssNI GRCGYC 5 cut(s) 54, 222, 648, 836, 842
BssT1I CCWWGG 1 cut(s) 561
Bst2UI CCWGG 2 cut(s) 159, 912
Bst4CI ACNGT 5 cut(s) 88, 205, 433, 517, 550
Bst6I CTCTTC 1 cut(s) 699
BstACI GRCGYC 5 cut(s) 54, 222, 648, 836, 842
BstC8I GCNNGC 4 cut(s) 291, 390, 630, 778
BstDEI CTNAG 2 cut(s) 285, 901
BstDSI CCRYGG 1 cut(s) 561
BstEII GGTNACC 1 cut(s) 205
BstF5I GGATG 2 cut(s) 125, 468
BstFNI CGCG 3 cut(s) 23, 626, 833
BstH2I RGCGCY 2 cut(s) 578, 651
BstHHI GCGC 7 cut(s) 23, 125, 483, 577, 628, 650, 917
BstKTI GATC 3 cut(s) 447, 541, 624
BstMAI GTCTC 2 cut(s) 283, 601
BstMBI GATC 3 cut(s) 444, 538, 621
BstMCI CGRYCG 3 cut(s) 393, 435, 615
BstMWI GCNNNNNNNGC 7 cut(s) 53, 120, 236, 465, 750, 773, 914
BstNI CCWGG 2 cut(s) 159, 912
BstNSI RCATGY 2 cut(s) 109, 921
BstPI GGTNACC 1 cut(s) 205
BstSCI CCNGG 4 cut(s) 157, 209, 736, 910
BstSLI GKGCMC 1 cut(s) 560
BstUI CGCG 3 cut(s) 23, 626, 833
BstV1I GCAGC 5 cut(s) 689, 718, 754, 757, 760
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 2 cut(s) 444, 538
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 2 cut(s) 444, 538
BstZI CGGCCG 1 cut(s) 390
BsuRI GGCC 6 cut(s) 47, 78, 293, 392, 416, 521
BtgI CCRYGG 1 cut(s) 561
BtgZI GCGATG 1 cut(s) 809
BtrI CACGTC 1 cut(s) 619
BtsCI GGATG 2 cut(s) 125, 468
BtsIMutI CAGTG 1 cut(s) 84
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 4 cut(s) 291, 390, 630, 778
CfoI GCGC 7 cut(s) 23, 125, 483, 577, 628, 650, 917
Cfr10I RCCGGY 6 cut(s) 289, 388, 610, 628, 650, 776
Cfr13I GGNCC 2 cut(s) 77, 415
CseI GACGC 3 cut(s) 62, 230, 825
Csp6I GTAC 3 cut(s) 513, 847, 853
CspAI ACCGGT 1 cut(s) 610
CviAII CATG 3 cut(s) 106, 562, 918
CviQI GTAC 3 cut(s) 513, 847, 853
DdeI CTNAG 2 cut(s) 285, 901
DinI GGCGCC 1 cut(s) 649
DpnI GATC 3 cut(s) 446, 540, 623
DpnII GATC 3 cut(s) 444, 538, 621
EaeI YGGCCR 2 cut(s) 291, 390
EagI CGGCCG 1 cut(s) 390
Eam1104I CTCTTC 1 cut(s) 699
EarI CTCTTC 1 cut(s) 699
EciI GGCGGA 1 cut(s) 353
EclXI CGGCCG 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 561
Eco31I GGTCTC 1 cut(s) 601
Eco47III AGCGCT 1 cut(s) 576
Eco52I CGGCCG 1 cut(s) 390
Eco57I CTGAAG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 245
Eco91I GGTNACC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 415
EcoO65I GGTNACC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 157, 910
EcoT14I CCWWGG 1 cut(s) 561
EcoT22I ATGCAT 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 649
EheI GGCGCC 1 cut(s) 649
ErhI CCWWGG 1 cut(s) 561
Esp3I CGTCTC 1 cut(s) 283
FaeI CATG 3 cut(s) 109, 565, 921
FaiI YATR 3 cut(s) 107, 563, 919
FatI CATG 3 cut(s) 105, 561, 917
FauI CCCGC 1 cut(s) 868
FblI GTMKAC 4 cut(s) 69, 270, 615, 839
FokI GGATG 2 cut(s) 132, 455
FspBI CTAG 1 cut(s) 578
FspI TGCGCA 1 cut(s) 482
GlaI GCGC 7 cut(s) 22, 124, 482, 576, 627, 649, 916
HaeII RGCGCY 2 cut(s) 578, 651
HaeIII GGCC 6 cut(s) 47, 78, 293, 392, 416, 521
HgaI GACGC 3 cut(s) 62, 230, 825
HhaI GCGC 7 cut(s) 23, 125, 483, 577, 628, 650, 917
Hin1I GRCGYC 5 cut(s) 54, 222, 648, 836, 842
Hin1II CATG 3 cut(s) 109, 565, 921
Hin6I GCGC 7 cut(s) 21, 123, 481, 575, 626, 648, 915
HinP1I GCGC 7 cut(s) 21, 123, 481, 575, 626, 648, 915
HincII GTYRAC 4 cut(s) 70, 271, 616, 840
HindII GTYRAC 4 cut(s) 70, 271, 616, 840
HphI GGTGA 4 cut(s) 217, 323, 704, 811
Hpy166II GTNNAC 7 cut(s) 70, 220, 271, 616, 802, 840, 871
Hpy188I TCNGA 4 cut(s) 234, 352, 364, 595
Hpy188III TCNNGA 4 cut(s) 472, 493, 604, 903
Hpy8I GTNNAC 7 cut(s) 70, 220, 271, 616, 802, 840, 871
Hpy99I CGWCG 7 cut(s) 56, 74, 620, 647, 841, 844, 847
HpyCH4III ACNGT 5 cut(s) 88, 205, 433, 517, 550
HpyCH4IV ACGT 3 cut(s) 618, 842, 867
HpyCH4V TGCA 3 cut(s) 109, 454, 468
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 120, 236, 465, 750, 773, 914
HpyF3I CTNAG 2 cut(s) 285, 901
HpySE526I ACGT 3 cut(s) 618, 842, 867
Hsp92I GRCGYC 5 cut(s) 54, 222, 648, 836, 842
Hsp92II CATG 3 cut(s) 109, 565, 921
HspAI GCGC 7 cut(s) 21, 123, 481, 575, 626, 648, 915
KasI GGCGCC 1 cut(s) 647
KroI GCCGGC 4 cut(s) 289, 388, 628, 776
KroNI GCCGGC 4 cut(s) 291, 390, 630, 778
Kzo9I GATC 3 cut(s) 444, 538, 621
LmnI GCTCC 3 cut(s) 188, 811, 905
Lsp1109I GCAGC 5 cut(s) 689, 718, 754, 757, 760
LweI GCATC 4 cut(s) 110, 172, 468, 477
MaeI CTAG 1 cut(s) 578
MaeII ACGT 3 cut(s) 618, 842, 867
MaeIII GTNAC 3 cut(s) 205, 544, 692
MalI GATC 3 cut(s) 446, 540, 623
MbiI CCGCTC 1 cut(s) 230
MboI GATC 3 cut(s) 444, 538, 621
MflI RGATCY 2 cut(s) 444, 538
MhlI GDGCHC 3 cut(s) 431, 560, 910
Mly113I GGCGCC 1 cut(s) 648
MmeI TCCRAC 1 cut(s) 573
Mph1103I ATGCAT 1 cut(s) 111
MreI CGCCGGCG 1 cut(s) 628
MroNI GCCGGC 4 cut(s) 289, 388, 628, 776
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 551
MspR9I CCNGG 4 cut(s) 159, 211, 738, 912
Mva1269I GAATGC 1 cut(s) 814
MvaI CCWGG 2 cut(s) 159, 912
MvnI CGCG 3 cut(s) 23, 626, 833
MwoI GCNNNNNNNGC 7 cut(s) 53, 120, 236, 465, 750, 773, 914
NaeI GCCGGC 4 cut(s) 291, 390, 630, 778
NarI GGCGCC 1 cut(s) 648
NciI CCSGG 2 cut(s) 211, 738
NcoI CCATGG 1 cut(s) 561
NdeII GATC 3 cut(s) 444, 538, 621
NgoMIV GCCGGC 4 cut(s) 289, 388, 628, 776
NlaIII CATG 3 cut(s) 109, 565, 921
NlaIV GGNNCC 5 cut(s) 190, 417, 559, 649, 655
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 3 cut(s) 205, 544, 692
NsbI TGCGCA 1 cut(s) 482
NsiI ATGCAT 1 cut(s) 111
NspI RCATGY 2 cut(s) 109, 921
OliI CACNNNNGTG 1 cut(s) 551
PaeR7I CTCGAG 1 cut(s) 245
PctI GAATGC 1 cut(s) 814
PdiI GCCGGC 4 cut(s) 291, 390, 630, 778
PflFI GACNNNGTC 1 cut(s) 275
PinAI ACCGGT 1 cut(s) 610
PluTI GGCGCC 1 cut(s) 651
Psp6I CCWGG 2 cut(s) 157, 910
PspEI GGTNACC 1 cut(s) 205
PspGI CCWGG 2 cut(s) 157, 910
PspN4I GGNNCC 5 cut(s) 190, 417, 559, 649, 655
PspPI GGNCC 2 cut(s) 77, 415
PspXI VCTCGAGB 1 cut(s) 245
PsuI RGATCY 2 cut(s) 444, 538
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 3 cut(s) 514, 848, 854
RsaNI GTAC 3 cut(s) 513, 847, 853
RseI CAYNNNNRTG 1 cut(s) 551
SalI GTCGAC 4 cut(s) 68, 269, 614, 838
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 3 cut(s) 444, 538, 621
Sau96I GGNCC 2 cut(s) 77, 415
ScrFI CCNGG 4 cut(s) 159, 211, 738, 912
SduI GDGCHC 3 cut(s) 431, 560, 910
SfaNI GCATC 4 cut(s) 110, 172, 468, 477
SfoI GGCGCC 1 cut(s) 649
Sfr274I CTCGAG 1 cut(s) 245
SgrAI CRCCGGYG 2 cut(s) 628, 650
SgrDI CGTCGACG 1 cut(s) 838
SlaI CTCGAG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SspDI GGCGCC 1 cut(s) 647
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 4 cut(s) 157, 209, 736, 910
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 5 cut(s) 88, 205, 433, 517, 550
TaiI ACGT 3 cut(s) 621, 845, 870
TaqI TCGA 6 cut(s) 69, 246, 270, 525, 615, 839
TaqII GACCGA 1 cut(s) 116
TauI GCSGC 7 cut(s) 50, 78, 227, 230, 683, 783, 836
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 3 cut(s) 205, 544, 692
TseI GCWGC 5 cut(s) 677, 731, 767, 770, 773
Tsp45I GTSAC 3 cut(s) 205, 544, 692
TspRI CASTG 1 cut(s) 91
Tth111I GACNNNGTC 1 cut(s) 275
XceI RCATGY 2 cut(s) 109, 921
XhoI CTCGAG 1 cut(s) 245
XmiI GTMKAC 4 cut(s) 69, 270, 615, 839
XspI CTAG 1 cut(s) 578
ZraI GACGTC 1 cut(s) 843
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.