Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006291

Physical Location & Seq

Genomic Coordinates Forward (+)

10895886 .. 10896860

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g08830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCACAAGATGAAGAGTAAAATCTCCAAGTTTAAAGGTGTTAACAGTGTGAGCTTTGACGCACCCAAAGACCTGGTAATGGTGAAGGGATTCATGGATGTAAAGGAACTTGTACCCTACCTCAAAGAGAAGTTCCGGAGGGCCGTGGAAGTGGTCCCACCCAAGAAAGATGACGGCGGAGCTGCCGACAAGAAGTCAAAAGACGGCGGTGGTGACAAGGAAAAGGAAGCCGCAGGAGGCGATAAGAAAGAGAAAGACGGTGCTGGTGAGAAGAAAGATAAAGCAGTCGCAGCAGGTGACGGCGCCGCCGCAGGAGGAGGAGGAGGAGGAGGCGCCCCCAAGATGGAGGTGAGCAAGATGGAGTATAATGGATACCCACCTCCTTCTTACTACTGGTACGACGAAGGGCACGTTTACAACCACAACAAGTTTGTCATGGAGGCTCAAGCGCACCAGGCGCACGTTAGCCAGGGGTCCTCTAGCCATGGCTACTCTGTGCCGATGGAACACTACCCTGCGCCGCAGATGTTCAGCGACGAGAATCCGAACGGTTGTTCGGTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

189

Amino Acids

20.19

Weight (kDa)

7.77

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36950 AT5G03380 AT5G03380
fragaria_vesca	FvH4_6g16410 FvH4_6g16410
malus_domestica	MD04G1093300.v1.1 MD12G1113000.v1.1
prunus_persica	Prupe.6G232100_v2.0.a1 Prupe.6G232100_v2.0.a1
pyrus_communis	pycom04g08830 pycom12g11200
rosa_chinensis	RchiOBHm_Chr3g0470271
rosa_laevigata	RLG00000024284 RLG00000024290
rosa_multiflora	Rmu_co8443661.1_g000001 Rmu_sc0005600.1_g000019 Rmu_sc0011073.1_g000002
rosa_roxburghii	Rroxscaffold_6G00411000 Rroxscaffold_6G00411110
rosa_rugosa	Rorug03G0107700
rosa_samantha	Rh1AG099300 Rh3AG157500 Rh3BG181600 Rh3CG172400 Rh3DG193300
rosa_wichuraiana	Rw3G014860 Rw3G014980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	284
AccB1I	GGYRCC	2 cut(s)	302, 332
AccIII	TCCGGA	1 cut(s)	135
AciI	CCGC	6 cut(s)	177, 207, 231, 306, 309, 521
AcyI	GRCGYC	2 cut(s)	303, 333
AfaI	GTAC	2 cut(s)	114, 398
AfiI	CCNNNNNNNGG	2 cut(s)	79, 343
AhdI	GACNNNNNGTC	1 cut(s)	193
AjnI	CCWGG	3 cut(s)	72, 453, 468
AluBI	AGCT	2 cut(s)	54, 182
AluI	AGCT	2 cut(s)	54, 182
Aor13HI	TCCGGA	1 cut(s)	135
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	182, 290
Asp700I	GAANNNNTTC	1 cut(s)	89
AspLEI	GCGC	5 cut(s)	305, 335, 451, 460, 520
AspS9I	GGNCC	3 cut(s)	141, 154, 474
AsuHPI	GGTGA	5 cut(s)	94, 224, 278, 308, 361
AvaII	GGWCC	2 cut(s)	154, 474
BaeGI	GKGCMC	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	302, 332
BbvI	GCAGC	2 cut(s)	169, 302
BccI	CCATC	3 cut(s)	337, 352, 496
BceAI	ACGGC	4 cut(s)	128, 190, 220, 316
BciT130I	CCWGG	3 cut(s)	74, 455, 470
BciVI	GTATCC	1 cut(s)	365
BfaI	CTAG	1 cut(s)	480
BfoI	RGCGCY	2 cut(s)	306, 336
BfuAI	ACCTGC	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	6 cut(s)	183, 231, 291, 306, 309, 521
BlsI	GCNGC	6 cut(s)	184, 232, 292, 307, 310, 522
Bme1390I	CCNGG	3 cut(s)	74, 455, 470
Bme18I	GGWCC	2 cut(s)	154, 474
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	141, 154, 474
BmiI	GGNNCC	4 cut(s)	156, 304, 334, 475
BmrFI	CCNGG	3 cut(s)	74, 455, 470
BpuEI	CTTGAG	1 cut(s)	429
BsaHI	GRCGYC	2 cut(s)	303, 333
BsaJI	CCNNGG	3 cut(s)	144, 469, 484
BsaWI	WCCGGW	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 343
Bse1I	ACTGG	1 cut(s)	398
BseAI	TCCGGA	1 cut(s)	135
BseBI	CCWGG	3 cut(s)	74, 455, 470
BseDI	CCNNGG	3 cut(s)	144, 469, 484
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	79, 343
BseNI	ACTGG	1 cut(s)	398
BseRI	GAGGAG	5 cut(s)	330, 333, 336, 339, 342
BseSI	GKGCMC	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	169, 302
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	2 cut(s)	302, 332
BsiSI	CCGG	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	2 cut(s)	79, 343
BsmFI	GGGAC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp13I	TCCGGA	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	6 cut(s)	177, 207, 231, 306, 309, 521
BspANI	GGCC	1 cut(s)	143
BspEI	TCCGGA	1 cut(s)	135
BspLI	GGNNCC	4 cut(s)	156, 304, 334, 475
BspMI	ACCTGC	1 cut(s)	284
BspT107I	GGYRCC	2 cut(s)	302, 332
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	3 cut(s)	144, 469, 484
BssNI	GRCGYC	2 cut(s)	303, 333
BssT1I	CCWWGG	1 cut(s)	484
Bst2UI	CCWGG	3 cut(s)	74, 455, 470
Bst4CI	ACNGT	3 cut(s)	47, 260, 551
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	303, 333
BstDSI	CCRYGG	2 cut(s)	144, 484
BstF5I	GGATG	1 cut(s)	103
BstH2I	RGCGCY	2 cut(s)	306, 336
BstHHI	GCGC	5 cut(s)	305, 335, 451, 460, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 455, 457
BstNI	CCWGG	3 cut(s)	74, 455, 470
BstSCI	CCNGG	3 cut(s)	72, 453, 468
BstSLI	GKGCMC	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	169, 302
BstXI	CCANNNNNNTGG	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	143
BtgI	CCRYGG	2 cut(s)	144, 484
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	52
BveI	ACCTGC	1 cut(s)	284
CfoI	GCGC	5 cut(s)	305, 335, 451, 460, 520
Cfr13I	GGNCC	3 cut(s)	141, 154, 474
CseI	GACGC	1 cut(s)	68
CsiI	ACCWGGT	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	113, 397
CviAII	CATG	3 cut(s)	94, 436, 485
CviJI	RGCY	8 cut(s)	54, 143, 182, 230, 443, 468, 483, 489
CviKI_1	RGCY	8 cut(s)	54, 143, 182, 230, 443, 468, 483, 489
CviQI	GTAC	2 cut(s)	113, 397
DinI	GGCGCC	2 cut(s)	304, 334
DraI	TTTAAA	1 cut(s)	34
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	8
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	8
EciI	GGCGGA	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	154, 474
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRII	CCWGG	3 cut(s)	72, 453, 468
EcoT14I	CCWWGG	1 cut(s)	484
EgeI	GGCGCC	2 cut(s)	304, 334
EheI	GGCGCC	2 cut(s)	304, 334
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	3 cut(s)	97, 439, 488
FaiI	YATR	4 cut(s)	95, 366, 437, 486
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	3 cut(s)	93, 435, 484
Fnu4HI	GCNGC	6 cut(s)	183, 231, 291, 306, 309, 521
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	6 cut(s)	183, 231, 291, 306, 309, 521
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	5 cut(s)	304, 334, 450, 459, 519
GluI	GCNGC	6 cut(s)	183, 231, 291, 306, 309, 521
HaeII	RGCGCY	2 cut(s)	306, 336
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	136
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	5 cut(s)	305, 335, 451, 460, 520
Hin1I	GRCGYC	2 cut(s)	303, 333
Hin1II	CATG	3 cut(s)	97, 439, 488
Hin6I	GCGC	5 cut(s)	303, 333, 449, 458, 518
HinP1I	GCGC	5 cut(s)	303, 333, 449, 458, 518
HincII	GTYRAC	1 cut(s)	43
HindII	GTYRAC	1 cut(s)	43
HinfI	GANTC	2 cut(s)	90, 541
HpaI	GTTAAC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	5 cut(s)	94, 224, 278, 308, 361
Hpy166II	GTNNAC	2 cut(s)	43, 415
Hpy188I	TCNGA	1 cut(s)	546
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	2 cut(s)	43, 415
Hpy99I	CGWCG	2 cut(s)	404, 539
HpyAV	CCTTC	3 cut(s)	79, 393, 398
HpyCH4III	ACNGT	3 cut(s)	47, 260, 551
HpyCH4IV	ACGT	2 cut(s)	411, 462
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 455, 457
HpySE526I	ACGT	2 cut(s)	411, 462
Hsp92I	GRCGYC	2 cut(s)	303, 333
Hsp92II	CATG	3 cut(s)	97, 439, 488
HspAI	GCGC	5 cut(s)	303, 333, 449, 458, 518
KasI	GGCGCC	2 cut(s)	302, 332
Kpn2I	TCCGGA	1 cut(s)	135
KspAI	GTTAAC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	2 cut(s)	169, 302
MabI	ACCWGGT	1 cut(s)	72
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	2 cut(s)	411, 462
MaeIII	GTNAC	2 cut(s)	212, 296
MboII	GAAGA	2 cut(s)	25, 283
MhlI	GDGCHC	1 cut(s)	411
Mly113I	GGCGCC	2 cut(s)	303, 333
MroI	TCCGGA	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	2 cut(s)	33, 42
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	3 cut(s)	74, 455, 470
MvaI	CCWGG	3 cut(s)	74, 455, 470
MwoI	GCNNNNNNNGC	3 cut(s)	290, 455, 457
NarI	GGCGCC	2 cut(s)	303, 333
NcoI	CCATGG	1 cut(s)	484
NlaIII	CATG	3 cut(s)	97, 439, 488
NlaIV	GGNNCC	4 cut(s)	156, 304, 334, 475
NmuCI	GTSAC	2 cut(s)	212, 296
PaqCI	CACCTGC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	90, 541
PkrI	GCNGC	6 cut(s)	184, 232, 292, 307, 310, 522
PluTI	GGCGCC	2 cut(s)	306, 336
PpuMI	RGGWCCY	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	474
Psp6I	CCWGG	3 cut(s)	72, 453, 468
PspGI	CCWGG	3 cut(s)	72, 453, 468
PspN4I	GGNNCC	4 cut(s)	156, 304, 334, 475
PspPI	GGNCC	3 cut(s)	141, 154, 474
PspPPI	RGGWCCY	1 cut(s)	474
RsaI	GTAC	2 cut(s)	114, 398
RsaNI	GTAC	2 cut(s)	113, 397
SaqAI	TTAA	2 cut(s)	33, 42
SatI	GCNGC	6 cut(s)	183, 231, 291, 306, 309, 521
Sau96I	GGNCC	3 cut(s)	141, 154, 474
ScrFI	CCNGG	3 cut(s)	74, 455, 470
SduI	GDGCHC	1 cut(s)	411
SexAI	ACCWGGT	1 cut(s)	72
SfoI	GGCGCC	2 cut(s)	304, 334
SinI	GGWCC	2 cut(s)	154, 474
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
SsiI	CCGC	6 cut(s)	177, 207, 231, 306, 309, 521
SspDI	GGCGCC	2 cut(s)	302, 332
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	3 cut(s)	72, 453, 468
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	47, 260, 551
TaiI	ACGT	2 cut(s)	414, 465
TauI	GCSGC	4 cut(s)	233, 308, 311, 523
TfiI	GAWTC	2 cut(s)	90, 541
Tru1I	TTAA	2 cut(s)	33, 42
Tru9I	TTAA	2 cut(s)	33, 42
TscAI	CASTG	1 cut(s)	52
TseFI	GTSAC	2 cut(s)	212, 296
TseI	GCWGC	2 cut(s)	182, 290
Tsp45I	GTSAC	2 cut(s)	212, 296
TspDTI	ATGAA	2 cut(s)	26, 82
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	154, 474
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.