Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004360

Physical Location & Seq

Genomic Coordinates Forward (+)

16138570 .. 16142657

Gene Structure 4088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGAAGACGACAAGAAGAAGAAGAGAAACAAGAAAAAGAAGAATAAGCAGAATAATAAACGTGTTGACGACGCTTTAGCTTCTGGTGCAACGACCTCCGTCGATGAAAATCATATCGGAGATGGTGACGTTCCTCAAATTAGCGGAGGTCCAGATGCCGATGAGTCGCAATCATCTCATCAGATCGATGTCGTCGCAACTGAAGATGATTCTGGTGTTGAGAACAAGTCTCAGGGAAGTGAGGTGCTGTTGGAAGAAACAATTAAACAGTTACGTGAGGAAAATGGTTCCTACCTTCAGAAAGAGGCTGGTTTTGAAGAAAATGTTAGACGCTTGGAAACCGAGAATGAAGCTCACATTCAGAAAGAGGCATTGTTAGAAGAAAGGCTTGTACATTTGAAAACAGAGAATGAAGCTCACGTACATAATGAGGCACTGTTAGAAGGAAAGCTCTTGCATTTGAGAACAGAGAATGAAGATCACATACAGAATGAGGCACTGTTAGAAGAAAAGCTCTTGCATTTGAGAACAGAGAATGAAGCTCACATACAAAATGAGGCACTGTTGGAAGAAAGGCTCTTACATTTTAGAACTGAAAATGAAGCTCACAAACAAAACGAAGAAAAGTTGGAGGAAAGACTTGTGCAGTATAAAAACAAGAACGACATGCTTCTTCGTGAAATGTCTAGCACAGAAGCCCAGATGAGACAATTGCTAGATGAAAGATCTACCTTCACTCAGAAAGAGGCGAGTCTAGAAAAGAAAGTTCAACAACTTCAACACGATGAAGAATCCTTGGTGGCTGAGGAGAAGTCATCCAGAGAAATGATATCTAGCCTTAACAATGAAATTGCAAGGCTGCGAGCACAGGTTACGGAGTTGGAAAAATCTAAGAGTAATCTTCTAGAGCAGAATCAGAGTCTTAAGGAAACTATATCCAATCTTCAAGTCCAGCATGAAAACCATGATAGTAACGCAAAGGGTGCTTCTGAGGAAGAATTAAACTCACAGATTGAAGCAGCTTGTACTCTAGTTGAAAAGCTTATCACTGAAAATGCTGATCTAGTTGAAAAGGTGAACGAATTGTGTATTAAGCTAAACCAATCACAGCATGCTTCCCCTGAGAGCCTAGCAATTGAAGTAGAGAAATCTGAATCCTTAGAAGAAATACCCATACACGACGAGTTGATTAGAATTGATAACTCTAGGGACATGGATACTGCATCAATAAAGAGAAACTTTTCAGAAGGTGAAATAGAAGAAACGGTGCCGCTCTCTCTGAACGCGAATGGGGAAGTAGACGTGGAATCACAGGTTGCAGTAGCTGGAGAAGACGAAATAAATGCTGGTGTGCCTCTGGCGGACGCTCCACTTATCGGTGCTCCATTCAGGCTCGTCTCGTTTGTAGCAAGATACGTGAGTGGTGCAGATTTGGCGGCAAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

482

Amino Acids

54.35

Weight (kDa)

4.76

Isoelectric Point (pI)

56.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38580 AT2G38580 AT2G38580
fragaria_vesca	FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531
malus_domestica	MD12G1191100.v1.1
prunus_persica	Prupe.6G296200_v2.0.a1 Prupe.6G296200_v2.0.a1
pyrus_communis	pycom04g15590 pycom12g17830
rosa_chinensis	RchiOBHm_Chr3g0460131
rosa_laevigata	RLG00000025041
rosa_multiflora	Rmu_sc0000449.1_g000051 Rmu_sc0010911.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419810
rosa_rugosa	Rorug03G0040200 Rorug03G0040300 Rorug03G0040400
rosa_samantha	Rh3AG098200 Rh3BG101300 Rh3CG103400 Rh3DG102600 Rh5BG300100 Rh5DG309000 Rh7DG221400
rosa_wichuraiana	Rw3G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1267
AccBSI	CCGCTC	1 cut(s)	1273
AccI	GTMKAC	1 cut(s)	1299
AccII	CGCG	1 cut(s)	1286
AciI	CCGC	4 cut(s)	144, 1271, 1361, 1436
AcuI	CTGAAG	2 cut(s)	222, 281
AfaI	GTAC	3 cut(s)	393, 423, 1027
AfiI	CCNNNNNNNGG	1 cut(s)	1376
AflII	CTTAAG	1 cut(s)	923
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	9 cut(s)	317, 400, 770, 779, 947, 1016, 1037, 1070, 1139
AjiI	CACGTC	1 cut(s)	1303
Alw21I	GWGCWC	2 cut(s)	868, 1384
Alw26I	GTCTC	3 cut(s)	234, 700, 1402
AlwNI	CAGNNNCTG	1 cut(s)	1325
ApeKI	GCWGC	2 cut(s)	859, 1019
Asp700I	GAANNNNTTC	1 cut(s)	1240
AspS9I	GGNCC	1 cut(s)	149
AsuHPI	GGTGA	3 cut(s)	137, 1087, 1262
AvaII	GGWCC	1 cut(s)	149
BaeI	ACNNNNGTAYC	2 cut(s)	1405, 1438
BanI	GGYRCC	1 cut(s)	1267
BarI	GAAGNNNNNNTAC	6 cut(s)	405, 437, 468, 500, 531, 563
BbsI	GAAGAC	2 cut(s)	12, 1338
Bbv12I	GWGCWC	2 cut(s)	868, 1384
BbvCI	CCTCAGC	1 cut(s)	804
BbvI	GCAGC	2 cut(s)	846, 1031
BccI	CCATC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	1325, 1359
BciVI	GTATCC	1 cut(s)	1210
BcoDI	GTCTC	3 cut(s)	234, 700, 1402
BfaI	CTAG	9 cut(s)	687, 716, 755, 834, 905, 1031, 1064, 1130, 1206
BfrI	CTTAAG	1 cut(s)	923
BfuI	GTATCC	1 cut(s)	1210
BglII	AGATCT	1 cut(s)	725
BisI	GCNGC	4 cut(s)	860, 1020, 1271, 1437
BlsI	GCNGC	4 cut(s)	861, 1021, 1272, 1438
Bme18I	GGWCC	1 cut(s)	149
BmgBI	CACGTC	1 cut(s)	1303
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	2 cut(s)	289, 1269
BmsI	GCATC	2 cut(s)	145, 1232
BoxI	GACNNNNGTC	1 cut(s)	98
BpiI	GAAGAC	2 cut(s)	12, 1338
BpmI	CTGGAG	1 cut(s)	1347
Bpu10I	CCTNAGC	1 cut(s)	804
Bsa29I	ATCGAT	1 cut(s)	186
BsaAI	YACGTR	3 cut(s)	275, 421, 1417
BsaBI	GATNNNNATC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	795
Bsc4I	CCNNNNNNNGG	1 cut(s)	1376
Bse8I	GATNNNNATC	1 cut(s)	108
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	795
BseGI	GGATG	1 cut(s)	815
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	1376
BseMII	CTCAG	5 cut(s)	245, 752, 795, 981, 1113
BseRI	GAGGAG	1 cut(s)	821
BseXI	GCAGC	2 cut(s)	846, 1031
BsgI	GTGCAG	2 cut(s)	665, 1446
Bsh1236I	CGCG	1 cut(s)	1286
BshNI	GGYRCC	1 cut(s)	1267
BshVI	ATCGAT	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	868, 1384
BslFI	GGGAC	1 cut(s)	1223
BslI	CCNNNNNNNGG	1 cut(s)	1376
BsmAI	GTCTC	3 cut(s)	234, 700, 1402
BsmBI	CGTCTC	1 cut(s)	1402
BsmFI	GGGAC	1 cut(s)	1223
Bsp1286I	GDGCHC	2 cut(s)	868, 1384
Bsp1407I	TGTACA	1 cut(s)	391
Bsp143I	GATC	4 cut(s)	183, 478, 725, 1060
BspACI	CCGC	4 cut(s)	144, 1271, 1361, 1436
BspCNI	CTCAG	5 cut(s)	244, 751, 796, 982, 1114
BspDI	ATCGAT	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	1286
BspLI	GGNNCC	2 cut(s)	289, 1269
BspT107I	GGYRCC	1 cut(s)	1267
BspTI	CTTAAG	1 cut(s)	923
BsrBI	CCGCTC	1 cut(s)	1273
BsrGI	TGTACA	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	795
BssMI	GATC	4 cut(s)	183, 478, 725, 1060
BssT1I	CCWWGG	1 cut(s)	795
Bst4CI	ACNGT	5 cut(s)	270, 438, 501, 564, 1267
Bst6I	CTCTTC	1 cut(s)	17
BstAFI	CTTAAG	1 cut(s)	923
BstAPI	GCANNNNNTGC	1 cut(s)	983
BstAUI	TGTACA	1 cut(s)	391
BstBAI	YACGTR	3 cut(s)	275, 421, 1417
BstC8I	GCNNGC	2 cut(s)	864, 1113
BstDEI	CTNAG	7 cut(s)	231, 738, 804, 891, 990, 1122, 1159
BstF5I	GGATG	1 cut(s)	815
BstFNI	CGCG	1 cut(s)	1286
BstKTI	GATC	4 cut(s)	186, 481, 728, 1063
BstMAI	GTCTC	3 cut(s)	234, 700, 1402
BstMBI	GATC	4 cut(s)	183, 478, 725, 1060
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 983, 1433
BstNSI	RCATGY	2 cut(s)	670, 1115
BstPAI	GACNNNNGTC	1 cut(s)	98
BstUI	CGCG	1 cut(s)	1286
BstV1I	GCAGC	2 cut(s)	846, 1031
BstV2I	GAAGAC	2 cut(s)	12, 1338
BstX2I	RGATCY	1 cut(s)	725
BstYI	RGATCY	1 cut(s)	725
Bsu15I	ATCGAT	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	1210
BsuTUI	ATCGAT	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	1303
BtsCI	GGATG	1 cut(s)	815
BtsIMutI	CAGTG	4 cut(s)	434, 497, 560, 1047
Cac8I	GCNNGC	2 cut(s)	864, 1113
CaiI	CAGNNNCTG	1 cut(s)	1325
Cfr13I	GGNCC	1 cut(s)	149
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	3 cut(s)	80, 339, 1373
Csp6I	GTAC	3 cut(s)	392, 422, 1026
CviAII	CATG	5 cut(s)	667, 956, 965, 1112, 1213
CviQI	GTAC	3 cut(s)	392, 422, 1026
DdeI	CTNAG	7 cut(s)	231, 738, 804, 891, 990, 1122, 1159
DpnI	GATC	4 cut(s)	185, 480, 727, 1062
DpnII	GATC	4 cut(s)	183, 478, 725, 1060
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	1376
Eco130I	CCWWGG	1 cut(s)	795
Eco32I	GATATC	1 cut(s)	831
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	222, 281
EcoRV	GATATC	1 cut(s)	831
EcoT14I	CCWWGG	1 cut(s)	795
ErhI	CCWWGG	1 cut(s)	795
Esp3I	CGTCTC	1 cut(s)	1402
FaeI	CATG	5 cut(s)	670, 959, 968, 1115, 1216
FalI	AAGNNNNNCTT	4 cut(s)	372, 404, 1223, 1255
FaqI	GGGAC	1 cut(s)	1223
FatI	CATG	5 cut(s)	666, 955, 964, 1111, 1212
FblI	GTMKAC	1 cut(s)	1299
Fnu4HI	GCNGC	4 cut(s)	860, 1020, 1271, 1437
FokI	GGATG	1 cut(s)	802
Fsp4HI	GCNGC	4 cut(s)	860, 1020, 1271, 1437
FspBI	CTAG	9 cut(s)	687, 716, 755, 834, 905, 1031, 1064, 1130, 1206
GluI	GCNGC	4 cut(s)	860, 1020, 1271, 1437
GsuI	CTGGAG	1 cut(s)	1347
HgaI	GACGC	3 cut(s)	80, 339, 1373
Hin1II	CATG	5 cut(s)	670, 959, 968, 1115, 1216
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	1040
HinfI	GANTC	8 cut(s)	164, 209, 751, 791, 913, 919, 1154, 1307
HphI	GGTGA	3 cut(s)	137, 1087, 1262
Hpy166II	GTNNAC	3 cut(s)	67, 1078, 1300
Hpy188III	TCNNGA	5 cut(s)	152, 677, 755, 819, 905
Hpy8I	GTNNAC	3 cut(s)	67, 1078, 1300
Hpy99I	CGWCG	4 cut(s)	74, 104, 197, 1184
HpyAV	CCTTC	4 cut(s)	305, 437, 742, 1241
HpyCH4III	ACNGT	5 cut(s)	270, 438, 501, 564, 1267
HpyCH4IV	ACGT	6 cut(s)	61, 129, 274, 420, 1302, 1416
HpyCH4V	TGCA	8 cut(s)	89, 457, 520, 646, 854, 1223, 1319, 1427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 983, 1433
HpyF3I	CTNAG	7 cut(s)	231, 738, 804, 891, 990, 1122, 1159
HpySE526I	ACGT	6 cut(s)	61, 129, 274, 420, 1302, 1416
Hsp92II	CATG	5 cut(s)	670, 959, 968, 1115, 1216
Kzo9I	GATC	4 cut(s)	183, 478, 725, 1060
LmnI	GCTCC	2 cut(s)	1372, 1387
Lsp1109I	GCAGC	2 cut(s)	846, 1031
LweI	GCATC	2 cut(s)	145, 1232
MaeI	CTAG	9 cut(s)	687, 716, 755, 834, 905, 1031, 1064, 1130, 1206
MaeII	ACGT	6 cut(s)	61, 129, 274, 420, 1302, 1416
MaeIII	GTNAC	4 cut(s)	125, 270, 871, 971
MalI	GATC	4 cut(s)	185, 480, 727, 1062
MbiI	CCGCTC	1 cut(s)	1273
MboI	GATC	4 cut(s)	183, 478, 725, 1060
MfeI	CAATTG	2 cut(s)	710, 1134
MflI	RGATCY	1 cut(s)	725
MhlI	GDGCHC	2 cut(s)	868, 1384
MluCI	AATT	8 cut(s)	138, 261, 710, 849, 998, 1082, 1134, 1194
MlyI	GAGTC	3 cut(s)	173, 760, 928
MmeI	TCCRAC	4 cut(s)	231, 546, 609, 861
MroXI	GAANNNNTTC	1 cut(s)	1240
MseI	TTAA	5 cut(s)	264, 840, 924, 1001, 1092
MspCI	CTTAAG	1 cut(s)	923
MunI	CAATTG	2 cut(s)	710, 1134
MvnI	CGCG	1 cut(s)	1286
MwoI	GCNNNNNNNGC	3 cut(s)	86, 983, 1433
NdeII	GATC	4 cut(s)	183, 478, 725, 1060
NlaIII	CATG	5 cut(s)	670, 959, 968, 1115, 1216
NlaIV	GGNNCC	2 cut(s)	289, 1269
NmuCI	GTSAC	1 cut(s)	125
NspI	RCATGY	2 cut(s)	670, 1115
PaeI	GCATGC	1 cut(s)	1115
PdmI	GAANNNNTTC	1 cut(s)	1240
PfeI	GAWTC	5 cut(s)	209, 791, 913, 1154, 1307
PkrI	GCNGC	4 cut(s)	861, 1021, 1272, 1438
PleI	GAGTC	3 cut(s)	172, 759, 927
PpsI	GAGTC	3 cut(s)	172, 759, 927
Ppu21I	YACGTR	3 cut(s)	275, 421, 1417
PshAI	GACNNNNGTC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	289, 1269
PspPI	GGNCC	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	1325
PsuI	RGATCY	1 cut(s)	725
RsaI	GTAC	3 cut(s)	393, 423, 1027
RsaNI	GTAC	3 cut(s)	392, 422, 1026
SaqAI	TTAA	5 cut(s)	264, 840, 924, 1001, 1092
SatI	GCNGC	4 cut(s)	860, 1020, 1271, 1437
Sau3AI	GATC	4 cut(s)	183, 478, 725, 1060
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	3 cut(s)	173, 760, 928
SduI	GDGCHC	2 cut(s)	868, 1384
SfaNI	GCATC	2 cut(s)	145, 1232
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	923
SmoI	CTYRAG	1 cut(s)	923
SphI	GCATGC	1 cut(s)	1115
Sse9I	AATT	8 cut(s)	138, 261, 710, 849, 998, 1082, 1134, 1194
SsiI	CCGC	4 cut(s)	144, 1271, 1361, 1436
SspMI	CTAG	9 cut(s)	687, 716, 755, 834, 905, 1031, 1064, 1130, 1206
StyI	CCWWGG	1 cut(s)	795
TaaI	ACNGT	5 cut(s)	270, 438, 501, 564, 1267
TaiI	ACGT	6 cut(s)	64, 132, 277, 423, 1305, 1419
TaqI	TCGA	2 cut(s)	102, 186
TasI	AATT	8 cut(s)	138, 261, 710, 849, 998, 1082, 1134, 1194
TatI	WGTACW	2 cut(s)	391, 1025
TauI	GCSGC	2 cut(s)	1273, 1439
TfiI	GAWTC	5 cut(s)	209, 791, 913, 1154, 1307
Tru1I	TTAA	5 cut(s)	264, 840, 924, 1001, 1092
Tru9I	TTAA	5 cut(s)	264, 840, 924, 1001, 1092
TscAI	CASTG	4 cut(s)	441, 504, 567, 1054
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	2 cut(s)	859, 1019
Tsp45I	GTSAC	1 cut(s)	125
TspGWI	ACGGA	2 cut(s)	88, 890
TspRI	CASTG	4 cut(s)	441, 504, 567, 1054
Vha464I	CTTAAG	1 cut(s)	923
VpaK11BI	GGWCC	1 cut(s)	149
XbaI	TCTAGA	2 cut(s)	754, 904
XceI	RCATGY	2 cut(s)	670, 1115
XmiI	GTMKAC	1 cut(s)	1299
XmnI	GAANNNNTTC	1 cut(s)	1240
XspI	CTAG	9 cut(s)	687, 716, 755, 834, 905, 1031, 1064, 1130, 1206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.