Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004360

Physical Location & Seq

Genomic Coordinates Reverse (-)

8211409 .. 8215414

Gene Structure 4006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG098200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAGGCGGAGGACAAGAAGAAGAAGAAGAGGAACAAGAATAAGAAGAAGAACACCAAGGCCACCGACGATGTCCCCGTCGCGGAGAACAGCAGCCAAGTTTCATCGTCCGCCGCCGCCGCCGAAACTATTTCCGAAGATGTCCAGATTTCCGGCAATGGTCAAGTTTCAGAGGCCGCTGATAATGCTGTGCAATATGTAGATGCGAATCCGATTAGGCATGAGAATGGCACCGAACAACGTTCGTTATTAGCTGAATCTGAGGAAAGGCATTGGCTTCAAAAAGAGGCTGAGTTGGAAGAAATGATCAAGCAATTAGAAAAAGAAAAAGACTTGCAAATGCACAAGGAGGCTACATTTGAGGGTACTATTAAGCAATTACAGAATGAAAAGGATTCAAGTGAACAGAAAGTGGCTACGTTAGAAGGTAAGATAAAACTATTACGGGATGAAAAAGATGCACATATGCAGAAAGAGGCTACATTAGAAGATACAATAAAACTATTACGGGAGGAAACTGATTCACACATTCATAAAGAGGCCATCCTACAGAAGGAAATTGTACAATTACGGAGTGAAACAGATTCATGGGTTCAAAAGGAGGTTGGGTTGGAGGAGAAAATCAGTCGACTAGTAGCCGAAAAGTCCACTTTGGAATCTGAAGAGGCAAGCTTACAGGAAAAGATTAAACATCTACAGAGTGATAGAGATACCTGGATTCTAAAGGAGGATTCATTTAAAGAAATGATAGCAACTCAGACAGATAATATTGCCAGACTACGAGCACAGGTGTTGGAATTGGAGCAATCCAGGAATAATCTTGTACAAGAAAACCAACAGCTGATGGGAAATTTATCTAGTCTAGAGTTGCAAATTAAGGATCTTGAGAGTGTTTCTTCTAATCGCTCATCAGTTGAAGGTGCAAAGCATACTTCAGAACGTGAAGATCTGAACTCGCAAATTGAAGCAGCATGTGCACTGGTTGAGAAATTAATTACAGAGAATGCAGACCTTGTTGAAAAGGTGAAGAGCTTCCCCTCCATGATTTCTGCAGGAGTAATGTGTACTACTTCTGTACACTGGAGGCAAACATATCTTTCATGCAATTGTGTTGTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

373

Amino Acids

42.23

Weight (kDa)

5.06

Isoelectric Point (pI)

55.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38580 AT2G38580 AT2G38580
fragaria_vesca	FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531
malus_domestica	MD12G1191100.v1.1
prunus_persica	Prupe.6G296200_v2.0.a1 Prupe.6G296200_v2.0.a1
pyrus_communis	pycom04g15590 pycom12g17830
rosa_chinensis	RchiOBHm_Chr3g0460131
rosa_laevigata	RLG00000025041
rosa_multiflora	Rmu_sc0000449.1_g000051 Rmu_sc0010911.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419810
rosa_rugosa	Rorug03G0040200 Rorug03G0040300 Rorug03G0040400
rosa_samantha	Rh3AG098200 Rh3BG101300 Rh3CG103400 Rh3DG102600 Rh5BG300100 Rh5DG309000 Rh7DG221400
rosa_wichuraiana	Rw3G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	628
AccII	CGCG	1 cut(s)	83
AciI	CCGC	7 cut(s)	8, 83, 111, 114, 117, 120, 177
AclI	AACGTT	1 cut(s)	241
AclWI	GGATC	1 cut(s)	888
AcsI	RAATTY	1 cut(s)	850
AcuI	CTGAAG	2 cut(s)	681, 918
AfaI	GTAC	5 cut(s)	367, 564, 825, 1066, 1077
AfiI	CCNNNNNNNGG	2 cut(s)	82, 553
AgsI	TTSAA	6 cut(s)	281, 399, 596, 917, 965, 1019
AhlI	ACTAGT	1 cut(s)	631
AjnI	CCWGG	2 cut(s)	713, 809
AluBI	AGCT	4 cut(s)	254, 672, 841, 1032
AluI	AGCT	4 cut(s)	254, 672, 841, 1032
Alw21I	GWGCWC	2 cut(s)	787, 979
Alw44I	GTGCAC	1 cut(s)	975
AlwI	GGATC	1 cut(s)	888
AoxI	GGCC	3 cut(s)	60, 174, 540
ApaLI	GTGCAC	1 cut(s)	975
ApeKI	GCWGC	2 cut(s)	93, 968
ApoI	RAATTY	1 cut(s)	850
AseI	ATTAAT	1 cut(s)	992
Asp700I	GAANNNNTTC	1 cut(s)	1031
AsuHPI	GGTGA	1 cut(s)	1036
BaeGI	GKGCMC	1 cut(s)	979
BanI	GGYRCC	1 cut(s)	230
Bbv12I	GWGCWC	2 cut(s)	787, 979
BbvI	GCAGC	2 cut(s)	105, 980
BccI	CCATC	2 cut(s)	551, 838
BciT130I	CCWGG	2 cut(s)	715, 811
BclI	TGATCA	1 cut(s)	306
BcuI	ACTAGT	1 cut(s)	631
BfaI	CTAG	3 cut(s)	632, 858, 863
BfmI	CTRYAG	3 cut(s)	548, 695, 1050
BglII	AGATCT	1 cut(s)	946
BisI	GCNGC	6 cut(s)	94, 114, 117, 120, 177, 969
BlsI	GCNGC	6 cut(s)	95, 115, 118, 121, 178, 970
Bme1390I	CCNGG	2 cut(s)	715, 811
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	715, 811
BmsI	GCATC	2 cut(s)	193, 448
BpmI	CTGGAG	1 cut(s)	1102
BpuEI	CTTGAG	1 cut(s)	905
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 553
Bse1I	ACTGG	2 cut(s)	984, 1085
Bse3DI	GCAATG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	2 cut(s)	715, 811
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	2 cut(s)	454, 543
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	82, 553
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	3 cut(s)	252, 282, 770
BseNI	ACTGG	2 cut(s)	984, 1085
BseRI	GAGGAG	1 cut(s)	629
BseSI	GKGCMC	1 cut(s)	979
BseXI	GCAGC	2 cut(s)	105, 980
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	3 cut(s)	62, 176, 542
BshNI	GGYRCC	1 cut(s)	230
BsiHKAI	GWGCWC	2 cut(s)	787, 979
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	82, 553
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	1009
BsnI	GGCC	3 cut(s)	62, 176, 542
Bsp1286I	GDGCHC	2 cut(s)	787, 979
Bsp1407I	TGTACA	3 cut(s)	562, 823, 1075
Bsp143I	GATC	3 cut(s)	306, 880, 946
BspACI	CCGC	7 cut(s)	8, 83, 111, 114, 117, 120, 177
BspANI	GGCC	3 cut(s)	62, 176, 542
BspCNI	CTCAG	3 cut(s)	253, 283, 769
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	232
BspMAI	CTGCAG	1 cut(s)	1054
BspPI	GGATC	1 cut(s)	888
BspQI	GCTCTTC	1 cut(s)	1022
BspT107I	GGYRCC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	163
BsrGI	TGTACA	3 cut(s)	562, 823, 1075
BsrI	ACTGG	2 cut(s)	984, 1085
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	3 cut(s)	306, 880, 946
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	715, 811
Bst6I	CTCTTC	3 cut(s)	23, 657, 1022
BstAPI	GCANNNNNTGC	1 cut(s)	974
BstAUI	TGTACA	3 cut(s)	562, 823, 1075
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	3 cut(s)	261, 291, 756
BstENI	CCTNNNNNAGG	1 cut(s)	551
BstF5I	GGATG	2 cut(s)	454, 543
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	3 cut(s)	309, 883, 949
BstMBI	GATC	3 cut(s)	306, 880, 946
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 185, 974
BstNI	CCWGG	2 cut(s)	715, 811
BstNSI	RCATGY	1 cut(s)	975
BstSCI	CCNGG	2 cut(s)	713, 809
BstSFI	CTRYAG	3 cut(s)	548, 695, 1050
BstSLI	GKGCMC	1 cut(s)	979
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	105, 980
BstX2I	RGATCY	2 cut(s)	880, 946
BstYI	RGATCY	2 cut(s)	880, 946
BsuRI	GGCC	3 cut(s)	62, 176, 542
BtsCI	GGATG	2 cut(s)	454, 543
BtsIMutI	CAGTG	2 cut(s)	977, 1078
Cac8I	GCNNGC	1 cut(s)	670
Csp6I	GTAC	5 cut(s)	366, 563, 824, 1065, 1076
CviAII	CATG	5 cut(s)	221, 588, 972, 1042, 1101
CviQI	GTAC	5 cut(s)	366, 563, 824, 1065, 1076
DdeI	CTNAG	3 cut(s)	261, 291, 756
DpnI	GATC	3 cut(s)	308, 882, 948
DpnII	GATC	3 cut(s)	306, 880, 946
DraI	TTTAAA	1 cut(s)	739
Eam1104I	CTCTTC	3 cut(s)	23, 657, 1022
EarI	CTCTTC	3 cut(s)	23, 657, 1022
EciI	GGCGGA	2 cut(s)	23, 100
Eco130I	CCWWGG	1 cut(s)	57
Eco57I	CTGAAG	2 cut(s)	681, 918
EcoNI	CCTNNNNNAGG	1 cut(s)	551
EcoRII	CCWGG	2 cut(s)	713, 809
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	5 cut(s)	224, 591, 975, 1045, 1104
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	5 cut(s)	220, 587, 971, 1041, 1100
FauNDI	CATATG	1 cut(s)	465
FbaI	TGATCA	1 cut(s)	306
FblI	GTMKAC	1 cut(s)	628
Fnu4HI	GCNGC	6 cut(s)	94, 114, 117, 120, 177, 969
FokI	GGATG	2 cut(s)	461, 530
Fsp4HI	GCNGC	6 cut(s)	94, 114, 117, 120, 177, 969
FspBI	CTAG	3 cut(s)	632, 858, 863
GluI	GCNGC	6 cut(s)	94, 114, 117, 120, 177, 969
GsuI	CTGGAG	1 cut(s)	1102
HaeIII	GGCC	3 cut(s)	62, 176, 542
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	5 cut(s)	224, 591, 975, 1045, 1104
HincII	GTYRAC	1 cut(s)	629
HindII	GTYRAC	1 cut(s)	629
HindIII	AAGCTT	1 cut(s)	670
HinfI	GANTC	8 cut(s)	208, 257, 395, 521, 584, 656, 718, 731
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	1036
Hpy166II	GTNNAC	6 cut(s)	404, 629, 648, 977, 1065, 1078
Hpy188I	TCNGA	8 cut(s)	136, 172, 213, 262, 661, 759, 937, 951
Hpy188III	TCNNGA	3 cut(s)	145, 863, 884
Hpy8I	GTNNAC	6 cut(s)	404, 629, 648, 977, 1065, 1078
Hpy99I	CGWCG	2 cut(s)	71, 83
HpyAV	CCTTC	3 cut(s)	419, 547, 911
HpyCH4IV	ACGT	3 cut(s)	241, 419, 940
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 185, 974
HpyF3I	CTNAG	3 cut(s)	261, 291, 756
HpySE526I	ACGT	3 cut(s)	241, 419, 940
Hsp92II	CATG	5 cut(s)	224, 591, 975, 1045, 1104
Ksp22I	TGATCA	1 cut(s)	306
Kzo9I	GATC	3 cut(s)	306, 880, 946
LguI	GCTCTTC	1 cut(s)	1022
LmnI	GCTCC	1 cut(s)	802
Lsp1109I	GCAGC	2 cut(s)	105, 980
LweI	GCATC	2 cut(s)	193, 448
MaeI	CTAG	3 cut(s)	632, 858, 863
MaeII	ACGT	3 cut(s)	241, 419, 940
MalI	GATC	3 cut(s)	308, 882, 948
MboI	GATC	3 cut(s)	306, 880, 946
MfeI	CAATTG	1 cut(s)	1105
MflI	RGATCY	2 cut(s)	880, 946
MhlI	GDGCHC	2 cut(s)	787, 979
MmeI	TCCRAC	3 cut(s)	276, 591, 774
MroXI	GAANNNNTTC	1 cut(s)	1031
MseI	TTAA	5 cut(s)	372, 687, 738, 876, 992
MslI	CAYNNNNRTG	1 cut(s)	225
MspA1I	CMGCKG	2 cut(s)	179, 841
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	715, 811
MunI	CAATTG	1 cut(s)	1105
Mva1269I	GAATGC	1 cut(s)	1009
MvaI	CCWGG	2 cut(s)	715, 811
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	119, 185, 974
NdeI	CATATG	1 cut(s)	465
NdeII	GATC	3 cut(s)	306, 880, 946
NlaIII	CATG	5 cut(s)	224, 591, 975, 1045, 1104
NlaIV	GGNNCC	1 cut(s)	232
NspI	RCATGY	1 cut(s)	975
PciSI	GCTCTTC	1 cut(s)	1022
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	1009
PdmI	GAANNNNTTC	1 cut(s)	1031
PfeI	GAWTC	8 cut(s)	208, 257, 395, 521, 584, 656, 718, 731
PflFI	GACNNNGTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	809
PkrI	GCNGC	6 cut(s)	95, 115, 118, 121, 178, 970
PshBI	ATTAAT	1 cut(s)	992
Psp1406I	AACGTT	1 cut(s)	241
Psp6I	CCWGG	2 cut(s)	713, 809
PspGI	CCWGG	2 cut(s)	713, 809
PspN4I	GGNNCC	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	1054
PsuI	RGATCY	2 cut(s)	880, 946
PsyI	GACNNNGTC	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	841
RsaI	GTAC	5 cut(s)	367, 564, 825, 1066, 1077
RsaNI	GTAC	5 cut(s)	366, 563, 824, 1065, 1076
RseI	CAYNNNNRTG	1 cut(s)	225
SalI	GTCGAC	1 cut(s)	627
SapI	GCTCTTC	1 cut(s)	1022
SaqAI	TTAA	5 cut(s)	372, 687, 738, 876, 992
SatI	GCNGC	6 cut(s)	94, 114, 117, 120, 177, 969
Sau3AI	GATC	3 cut(s)	306, 880, 946
ScrFI	CCNGG	2 cut(s)	715, 811
SduI	GDGCHC	2 cut(s)	787, 979
SfaNI	GCATC	2 cut(s)	193, 448
SfcI	CTRYAG	3 cut(s)	548, 695, 1050
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	884
SmoI	CTYRAG	1 cut(s)	884
SpeI	ACTAGT	1 cut(s)	631
SsiI	CCGC	7 cut(s)	8, 83, 111, 114, 117, 120, 177
SspI	AATATT	1 cut(s)	769
SspMI	CTAG	3 cut(s)	632, 858, 863
StyD4I	CCNGG	2 cut(s)	713, 809
StyI	CCWWGG	1 cut(s)	57
TaiI	ACGT	3 cut(s)	244, 422, 943
TaqI	TCGA	1 cut(s)	628
TatI	WGTACW	4 cut(s)	562, 823, 1064, 1075
TauI	GCSGC	4 cut(s)	116, 119, 122, 179
TfiI	GAWTC	8 cut(s)	208, 257, 395, 521, 584, 656, 718, 731
Tru1I	TTAA	5 cut(s)	372, 687, 738, 876, 992
Tru9I	TTAA	5 cut(s)	372, 687, 738, 876, 992
TscAI	CASTG	2 cut(s)	984, 1085
TseI	GCWGC	2 cut(s)	93, 968
TspDTI	ATGAA	7 cut(s)	93, 402, 465, 521, 576, 723, 1089
TspGWI	ACGGA	1 cut(s)	586
TspRI	CASTG	2 cut(s)	984, 1085
Tth111I	GACNNNGTC	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	975
VspI	ATTAAT	1 cut(s)	992
XagI	CCTNNNNNAGG	1 cut(s)	551
XapI	RAATTY	1 cut(s)	850
XbaI	TCTAGA	1 cut(s)	862
XceI	RCATGY	1 cut(s)	975
XmiI	GTMKAC	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	1031
XspI	CTAG	3 cut(s)	632, 858, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.