Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000449.1

Orthogroup ID

OG0004360

Physical Location & Seq

Genomic Coordinates Forward (+)

205150 .. 209096

Gene Structure 3947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000449.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

atggaggcggaggacaagaagaagaagaagaggaacaagaataagaagaagaacaacaaggccaccgacgatgtccccgtcgcggagaacagcagccaagtttcatcgtccgcagccgccgccgccgccgatactatttccgaagatgtccagatttccggcaatggtcaagtttcagaggccgctgataatgctgtgcaatgtgtagatgcgaatccgattaggcatgagaatggcaccgaacaacgtatttccggcaatggtcaagtttcagaggccgctgataatgctgtgcaatatgtagatgcgaatccgattaggcatgagaatggcaccgaacaacgttcgttattagctgaatctgaggaaaggcattggcttcaaaaagaggctgagttggaagaaatgatcaagcaattagaaaaagaaaaagacttgcaaatgcacaaggaggttacatttgagggtactattaagcaattacagaatgaaaaggattcaagtgaacagaatgtggctacgttagaaggtaagataaaactgttacgggatgaaaaagatgcacatatgcagaaagaggctacgttagaagatacaataaaactattacgggaggaaactgattcacacattcataaagaggctacgttagaaggtacgataaaactattacgggatgaaaaagatgcacatatgcagaaagaggctacgttagaagatacaataaaactattacgggaggaaactgattcacacattcataaagaggccatcctgcagaaggaaattgtacaattacggagtgaaacagattcctggcttcaaagggaggttgggttggaggagaaaatcagtcgactagtagccgaaaagtccactttggaatctgaagaggcaagcttacaggaaaagattaaacatctacagagtgatagagatacctggattctaaaggaggattcatttaaagaaatgatagcaactcagacagataatattgctagactacgagcacaggtgttggaattggagcaatccaggaataatcttgtacaagaaaaccaacagctgatgggaaatttatctagtttagagttgcaaattaaggatcttgagagtgtttcttctaatcgctcatcagttgaaggtgcaaagcatacttcagaacgtgaagatctgaactcgcaaattgaagcagcatgtgcactggttgataaattaattacagagaatgcagaccttgttgaaaaggtgaacgagttgtatgttgaacttgaacggcatagtgcaaaagatgggcttccttcaactacaacatttaatacaacagttctaccagttgaaactcttggtaccatcaatcccatgtccagatccggtgaggatatgtctacatcaggccagaagctttattcatcagaagttgtgctgctcaaagaggagatacataataatggtaacatggattcccagcaggctgcttcactgcaaagtaatggtaatttggatattcagcatcctgaatcagttccaaattcaaccatatcgtatgaatccagtgaaagtgaaattgtgcaaattcctttggacgccgatgaagttcgggatctagaattgcagtcagccagagaggttaaaaacgaagctgtctctcttacagatgctcccctaattggtgcacctttccggttagtgtcgtttgttgctagatatgtcagcggtgcagacttggttaacgaaagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

581

Amino Acids

64.93

Weight (kDa)

4.75

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38580 AT2G38580 AT2G38580
fragaria_vesca	FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531
malus_domestica	MD12G1191100.v1.1
prunus_persica	Prupe.6G296200_v2.0.a1 Prupe.6G296200_v2.0.a1
pyrus_communis	pycom04g15590 pycom12g17830
rosa_chinensis	RchiOBHm_Chr3g0460131
rosa_laevigata	RLG00000025041
rosa_multiflora	Rmu_sc0000449.1_g000051 Rmu_sc0010911.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419810
rosa_rugosa	Rorug03G0040200 Rorug03G0040300 Rorug03G0040400
rosa_samantha	Rh3AG098200 Rh3BG101300 Rh3CG103400 Rh3DG102600 Rh5BG300100 Rh5DG309000 Rh7DG221400
rosa_wichuraiana	Rw3G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1352
AccB1I	GGYRCC	3 cut(s)	236, 332, 1352
AccI	GTMKAC	2 cut(s)	856, 1391
AccII	CGCG	1 cut(s)	83
AclI	AACGTT	1 cut(s)	343
AclWI	GGATC	3 cut(s)	1116, 1368, 1614
AcsI	RAATTY	3 cut(s)	1078, 1534, 1578
AcuI	CTGAAG	2 cut(s)	909, 1146
AcyI	GRCGYC	1 cut(s)	1590
AfaI	GTAC	5 cut(s)	469, 658, 792, 1053, 1354
AfiI	CCNNNNNNNGG	3 cut(s)	82, 781, 1673
AhlI	ACTAGT	1 cut(s)	859
AjnI	CCWGG	3 cut(s)	815, 941, 1037
AluBI	AGCT	5 cut(s)	356, 900, 1069, 1408, 1646
AluI	AGCT	5 cut(s)	356, 900, 1069, 1408, 1646
Alw21I	GWGCWC	3 cut(s)	1015, 1207, 1681
Alw26I	GTCTC	1 cut(s)	1654
Alw44I	GTGCAC	2 cut(s)	1203, 1677
AlwI	GGATC	3 cut(s)	1116, 1368, 1614
AoxI	GGCC	5 cut(s)	60, 180, 276, 768, 1399
ApaLI	GTGCAC	2 cut(s)	1203, 1677
ApeKI	GCWGC	5 cut(s)	93, 113, 1196, 1429, 1478
ApoI	RAATTY	3 cut(s)	1078, 1534, 1578
AseI	ATTAAT	1 cut(s)	1220
Asp700I	GAANNNNTTC	1 cut(s)	1527
Asp718I	GGTACC	1 cut(s)	1352
AsuHPI	GGTGA	2 cut(s)	1264, 1391
BaeGI	GKGCMC	2 cut(s)	1207, 1681
BanI	GGYRCC	3 cut(s)	236, 332, 1352
Bbv12I	GWGCWC	3 cut(s)	1015, 1207, 1681
BbvI	GCAGC	5 cut(s)	105, 125, 1208, 1416, 1465
BccI	CCATC	4 cut(s)	779, 1066, 1289, 1364
BceAI	ACGGC	1 cut(s)	1295
BciT130I	CCWGG	3 cut(s)	817, 943, 1039
BclI	TGATCA	1 cut(s)	408
BcoDI	GTCTC	1 cut(s)	1654
BcuI	ACTAGT	1 cut(s)	859
BfaI	CTAG	5 cut(s)	860, 1002, 1086, 1610, 1707
BfmI	CTRYAG	2 cut(s)	776, 923
BglII	AGATCT	1 cut(s)	1174
Bme1390I	CCNGG	3 cut(s)	817, 943, 1039
BmiI	GGNNCC	3 cut(s)	238, 334, 1354
BmrFI	CCNGG	3 cut(s)	817, 943, 1039
BmsI	GCATC	6 cut(s)	199, 295, 550, 676, 1525, 1651
BpuEI	CTTGAG	1 cut(s)	1133
BsaBI	GATNNNNATC	2 cut(s)	213, 309
BsaHI	GRCGYC	1 cut(s)	1590
BsaWI	WCCGGW	2 cut(s)	1376, 1686
BsaXI	ACNNNNNCTCC	4 cut(s)	821, 851, 1648, 1678
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 781, 1673
Bse1I	ACTGG	3 cut(s)	1212, 1337, 1557
Bse3DI	GCAATG	3 cut(s)	169, 206, 265
Bse8I	GATNNNNATC	2 cut(s)	213, 309
BseBI	CCWGG	3 cut(s)	817, 943, 1039
BseGI	GGATG	4 cut(s)	556, 682, 771, 1516
BseJI	GATNNNNATC	2 cut(s)	213, 309
BseLI	CCNNNNNNNGG	3 cut(s)	82, 781, 1673
BseMI	GCAATG	3 cut(s)	169, 206, 265
BseMII	CTCAG	3 cut(s)	354, 384, 998
BseNI	ACTGG	3 cut(s)	1212, 1337, 1557
BseRI	GAGGAG	2 cut(s)	857, 1454
BseSI	GKGCMC	2 cut(s)	1207, 1681
BseXI	GCAGC	5 cut(s)	105, 125, 1208, 1416, 1465
BseYI	CCCAGC	1 cut(s)	1470
BsgI	GTGCAG	1 cut(s)	1743
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	5 cut(s)	62, 182, 278, 770, 1401
BshNI	GGYRCC	3 cut(s)	236, 332, 1352
BsiHKAI	GWGCWC	3 cut(s)	1015, 1207, 1681
BsiSI	CCGG	4 cut(s)	159, 255, 1377, 1687
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	82, 781, 1673
BsmAI	GTCTC	1 cut(s)	1654
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	1237
BsnI	GGCC	5 cut(s)	62, 182, 278, 770, 1401
Bsp1286I	GDGCHC	3 cut(s)	1015, 1207, 1681
Bsp1407I	TGTACA	2 cut(s)	790, 1051
Bsp143I	GATC	5 cut(s)	408, 1108, 1174, 1373, 1606
BspANI	GGCC	5 cut(s)	62, 182, 278, 770, 1401
BspCNI	CTCAG	3 cut(s)	355, 385, 997
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	3 cut(s)	238, 334, 1354
BspMAI	CTGCAG	1 cut(s)	780
BspPI	GGATC	3 cut(s)	1116, 1368, 1614
BspT107I	GGYRCC	3 cut(s)	236, 332, 1352
BsrDI	GCAATG	3 cut(s)	169, 206, 265
BsrGI	TGTACA	2 cut(s)	790, 1051
BsrI	ACTGG	3 cut(s)	1212, 1337, 1557
BssMI	GATC	5 cut(s)	408, 1108, 1174, 1373, 1606
BssNI	GRCGYC	1 cut(s)	1590
Bst2UI	CCWGG	3 cut(s)	817, 943, 1039
Bst4CI	ACNGT	2 cut(s)	543, 1330
Bst6I	CTCTTC	2 cut(s)	23, 885
BstACI	GRCGYC	1 cut(s)	1590
BstAPI	GCANNNNNTGC	1 cut(s)	1202
BstAUI	TGTACA	2 cut(s)	790, 1051
BstC8I	GCNNGC	2 cut(s)	898, 1476
BstDEI	CTNAG	3 cut(s)	363, 393, 984
BstENI	CCTNNNNNAGG	1 cut(s)	779
BstF5I	GGATG	4 cut(s)	556, 682, 771, 1516
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	5 cut(s)	411, 1111, 1177, 1376, 1609
BstMAI	GTCTC	1 cut(s)	1654
BstMBI	GATC	5 cut(s)	408, 1108, 1174, 1373, 1606
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 122, 125, 191, 287, 1202
BstNI	CCWGG	3 cut(s)	817, 943, 1039
BstNSI	RCATGY	1 cut(s)	1203
BstSCI	CCNGG	3 cut(s)	815, 941, 1037
BstSFI	CTRYAG	2 cut(s)	776, 923
BstSLI	GKGCMC	2 cut(s)	1207, 1681
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	5 cut(s)	105, 125, 1208, 1416, 1465
BstX2I	RGATCY	4 cut(s)	1108, 1174, 1373, 1606
BstYI	RGATCY	4 cut(s)	1108, 1174, 1373, 1606
BsuRI	GGCC	5 cut(s)	62, 182, 278, 770, 1401
BtsCI	GGATG	4 cut(s)	556, 682, 771, 1516
BtsI	GCAGTG	1 cut(s)	1484
BtsIMutI	CAGTG	3 cut(s)	1205, 1484, 1564
Cac8I	GCNNGC	2 cut(s)	898, 1476
CseI	GACGC	1 cut(s)	1598
Csp6I	GTAC	5 cut(s)	468, 657, 791, 1052, 1353
CviAII	CATG	5 cut(s)	227, 323, 1200, 1366, 1462
CviQI	GTAC	5 cut(s)	468, 657, 791, 1052, 1353
DdeI	CTNAG	3 cut(s)	363, 393, 984
DpnI	GATC	5 cut(s)	410, 1110, 1176, 1375, 1608
DpnII	GATC	5 cut(s)	408, 1108, 1174, 1373, 1606
DraI	TTTAAA	1 cut(s)	967
Eam1104I	CTCTTC	2 cut(s)	23, 885
EarI	CTCTTC	2 cut(s)	23, 885
EciI	GGCGGA	1 cut(s)	23
Eco57I	CTGAAG	2 cut(s)	909, 1146
EcoNI	CCTNNNNNAGG	1 cut(s)	779
EcoRII	CCWGG	3 cut(s)	815, 941, 1037
FaeI	CATG	5 cut(s)	230, 326, 1203, 1369, 1465
FalI	AAGNNNNNCTT	2 cut(s)	1284, 1316
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	5 cut(s)	226, 322, 1199, 1365, 1461
FauNDI	CATATG	2 cut(s)	567, 693
FbaI	TGATCA	1 cut(s)	408
FblI	GTMKAC	2 cut(s)	856, 1391
FokI	GGATG	4 cut(s)	563, 689, 758, 1503
FspBI	CTAG	5 cut(s)	860, 1002, 1086, 1610, 1707
GsaI	CCCAGC	1 cut(s)	1474
HaeIII	GGCC	5 cut(s)	62, 182, 278, 770, 1401
HapII	CCGG	4 cut(s)	159, 255, 1377, 1687
HgaI	GACGC	1 cut(s)	1598
Hin1I	GRCGYC	1 cut(s)	1590
Hin1II	CATG	5 cut(s)	230, 326, 1203, 1369, 1465
HincII	GTYRAC	2 cut(s)	857, 1735
HindII	GTYRAC	2 cut(s)	857, 1735
HindIII	AAGCTT	2 cut(s)	898, 1406
HpaI	GTTAAC	1 cut(s)	1735
HpaII	CCGG	4 cut(s)	159, 255, 1377, 1687
HphI	GGTGA	2 cut(s)	1264, 1391
Hpy166II	GTNNAC	8 cut(s)	506, 857, 876, 1205, 1255, 1392, 1679, 1735
Hpy188III	TCNNGA	6 cut(s)	151, 1112, 1371, 1520, 1604, 1610
Hpy8I	GTNNAC	8 cut(s)	506, 857, 876, 1205, 1255, 1392, 1679, 1735
Hpy99I	CGWCG	2 cut(s)	71, 83
HpyAV	CCTTC	5 cut(s)	521, 647, 775, 1139, 1314
HpyCH4III	ACNGT	2 cut(s)	543, 1330
HpyCH4IV	ACGT	7 cut(s)	247, 343, 521, 584, 647, 710, 1168
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 122, 125, 191, 287, 1202
HpyF3I	CTNAG	3 cut(s)	363, 393, 984
HpySE526I	ACGT	7 cut(s)	247, 343, 521, 584, 647, 710, 1168
Hsp92I	GRCGYC	1 cut(s)	1590
Hsp92II	CATG	5 cut(s)	230, 326, 1203, 1369, 1465
KpnI	GGTACC	1 cut(s)	1356
Ksp22I	TGATCA	1 cut(s)	408
KspAI	GTTAAC	1 cut(s)	1735
Kzo9I	GATC	5 cut(s)	408, 1108, 1174, 1373, 1606
LmnI	GCTCC	2 cut(s)	1030, 1669
Lsp1109I	GCAGC	5 cut(s)	105, 125, 1208, 1416, 1465
LweI	GCATC	6 cut(s)	199, 295, 550, 676, 1525, 1651
MaeI	CTAG	5 cut(s)	860, 1002, 1086, 1610, 1707
MaeII	ACGT	7 cut(s)	247, 343, 521, 584, 647, 710, 1168
MaeIII	GTNAC	3 cut(s)	454, 543, 1457
MalI	GATC	5 cut(s)	410, 1110, 1176, 1375, 1608
MboI	GATC	5 cut(s)	408, 1108, 1174, 1373, 1606
MflI	RGATCY	4 cut(s)	1108, 1174, 1373, 1606
MhlI	GDGCHC	3 cut(s)	1015, 1207, 1681
MmeI	TCCRAC	3 cut(s)	378, 819, 1002
MroXI	GAANNNNTTC	1 cut(s)	1527
MseI	TTAA	8 cut(s)	474, 915, 966, 1104, 1220, 1320, 1635, 1734
MslI	CAYNNNNRTG	3 cut(s)	231, 327, 1452
MspA1I	CMGCKG	4 cut(s)	185, 281, 1069, 1719
MspI	CCGG	4 cut(s)	159, 255, 1377, 1687
MspR9I	CCNGG	3 cut(s)	817, 943, 1039
Mva1269I	GAATGC	1 cut(s)	1237
MvaI	CCWGG	3 cut(s)	817, 943, 1039
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	6 cut(s)	119, 122, 125, 191, 287, 1202
NdeI	CATATG	2 cut(s)	567, 693
NdeII	GATC	5 cut(s)	408, 1108, 1174, 1373, 1606
NlaIII	CATG	5 cut(s)	230, 326, 1203, 1369, 1465
NlaIV	GGNNCC	3 cut(s)	238, 334, 1354
NspI	RCATGY	1 cut(s)	1203
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	1237
PdmI	GAANNNNTTC	1 cut(s)	1527
PflFI	GACNNNGTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	1037
PshBI	ATTAAT	1 cut(s)	1220
Psp1406I	AACGTT	1 cut(s)	343
Psp6I	CCWGG	3 cut(s)	815, 941, 1037
PspFI	CCCAGC	1 cut(s)	1470
PspGI	CCWGG	3 cut(s)	815, 941, 1037
PspN4I	GGNNCC	3 cut(s)	238, 334, 1354
PstI	CTGCAG	1 cut(s)	780
PsuI	RGATCY	4 cut(s)	1108, 1174, 1373, 1606
PsyI	GACNNNGTC	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	1069
RsaI	GTAC	5 cut(s)	469, 658, 792, 1053, 1354
RsaNI	GTAC	5 cut(s)	468, 657, 791, 1052, 1353
RseI	CAYNNNNRTG	3 cut(s)	231, 327, 1452
SalI	GTCGAC	1 cut(s)	855
SaqAI	TTAA	8 cut(s)	474, 915, 966, 1104, 1220, 1320, 1635, 1734
Sau3AI	GATC	5 cut(s)	408, 1108, 1174, 1373, 1606
ScrFI	CCNGG	3 cut(s)	817, 943, 1039
SduI	GDGCHC	3 cut(s)	1015, 1207, 1681
SfaNI	GCATC	6 cut(s)	199, 295, 550, 676, 1525, 1651
SfcI	CTRYAG	2 cut(s)	776, 923
SmiMI	CAYNNNNRTG	3 cut(s)	231, 327, 1452
SmlI	CTYRAG	1 cut(s)	1112
SmoI	CTYRAG	1 cut(s)	1112
SpeI	ACTAGT	1 cut(s)	859
SspI	AATATT	1 cut(s)	997
SspMI	CTAG	5 cut(s)	860, 1002, 1086, 1610, 1707
StyD4I	CCNGG	3 cut(s)	815, 941, 1037
TaaI	ACNGT	2 cut(s)	543, 1330
TaiI	ACGT	7 cut(s)	250, 346, 524, 587, 650, 713, 1171
TaqI	TCGA	1 cut(s)	856
TatI	WGTACW	2 cut(s)	790, 1051
TauI	GCSGC	6 cut(s)	119, 122, 125, 128, 185, 281
Tru1I	TTAA	8 cut(s)	474, 915, 966, 1104, 1220, 1320, 1635, 1734
Tru9I	TTAA	8 cut(s)	474, 915, 966, 1104, 1220, 1320, 1635, 1734
TscAI	CASTG	3 cut(s)	1212, 1491, 1564
TseI	GCWGC	5 cut(s)	93, 113, 1196, 1429, 1478
TspGWI	ACGGA	1 cut(s)	814
TspRI	CASTG	3 cut(s)	1212, 1491, 1564
Tth111I	GACNNNGTC	1 cut(s)	71
VneI	GTGCAC	2 cut(s)	1203, 1677
VspI	ATTAAT	1 cut(s)	1220
XagI	CCTNNNNNAGG	1 cut(s)	779
XapI	RAATTY	3 cut(s)	1078, 1534, 1578
XbaI	TCTAGA	1 cut(s)	1609
XceI	RCATGY	1 cut(s)	1203
XmiI	GTMKAC	2 cut(s)	856, 1391
XmnI	GAANNNNTTC	1 cut(s)	1527
XspI	CTAG	5 cut(s)	860, 1002, 1086, 1610, 1707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.