Rorug03G0040200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004360
Physical Location & Seq
Reverse (-)
3149748 .. 3150368
621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0040200.1

Sequence Viewer

Length: 621 bp
ATGGCGGTCATCGACTCTATCCCACAATCAACCCCAGGCCCTCTCCTATCATCGTCTGCTTGTTGTTCTTCGACGTCAGATCTCGAAGATGGAATTCAGGAAGTCATCTATTTCGTTAAGAGCTTTCCTATAATAATAGAAGCAAATGTGTATAGAGATTGGCCGATTGTGAAATCTGCTTTGGGGGAGCATGATATTAATTGCCATTTGGATATGGTTAACAGTCGCATGACATTCTCAACAACCAGAACCAAGGAACCAGAAATTGCGCGCAAGGCGAGGCATCTTCTCCAACTTTTGTCACGGAATGTTCCGGCATCTTCGGCACTAAACATAATAAAAGTGCCCAATTGCGAATGCGAAATCATCTTCACTGGTCTTAGTAAAGTCAACAATAGTTATTTAAAGGAACTGGAAGGGCAGACGTCATGCCAAATTTTTTCGCGTGATGGGTATGTTCGCGATGGGGTTGTTTTCGATGGCTTTGTTATTGCCATTGGTCCTTTGGAGGGACTAACAATAGTCAGAAAGGCTGTGGAATGTTGCAGTAAAATGCATCCTGCATACAATACGGTCACCACGATGCTGGCGACTAAGAAGCTCAACGATTTGCGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.76

Weight (kDa)

6.42

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 41 - 113 6.5e-09 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 77, 428
AccII CGCG 3 cut(s) 271, 445, 462
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 2 cut(s) 93, 435
AcyI GRCGYC 2 cut(s) 74, 425
AfiI CCNNNNNNNGG 1 cut(s) 509
AjnI CCWGG 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 2 cut(s) 123, 601
AluI AGCT 2 cut(s) 123, 601
AoxI GGCC 2 cut(s) 37, 161
ApoI RAATTY 2 cut(s) 93, 435
AseI ATTAAT 1 cut(s) 198
AspLEI GCGC 2 cut(s) 271, 273
AspS9I GGNCC 2 cut(s) 38, 500
AsuHPI GGTGA 1 cut(s) 568
AvaII GGWCC 1 cut(s) 500
BaeGI GKGCMC 1 cut(s) 348
BccI CCATC 4 cut(s) 83, 443, 458, 473
BciT130I CCWGG 1 cut(s) 36
BglII AGATCT 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 500
BmgT120I GGNCC 2 cut(s) 38, 500
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 4 cut(s) 292, 326, 565, 573
BsaHI GRCGYC 2 cut(s) 74, 425
BsaJI CCNNGG 2 cut(s) 34, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 2 cut(s) 379, 417
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 34, 252
BseGI GGATG 1 cut(s) 556
BseLI CCNNNNNNNGG 1 cut(s) 509
BseNI ACTGG 2 cut(s) 379, 417
BsePI GCGCGC 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 348
Bsh1236I CGCG 3 cut(s) 271, 445, 462
BshFI GGCC 2 cut(s) 39, 163
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 525
BslI CCNNNNNNNGG 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 525
BsmI GAATGC 1 cut(s) 362
BsnI GGCC 2 cut(s) 39, 163
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 79
Bsp68I TCGCGA 1 cut(s) 462
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 39, 163
BspFNI CGCG 3 cut(s) 271, 445, 462
BspLI GGNNCC 1 cut(s) 258
BsrI ACTGG 2 cut(s) 379, 417
BssECI CCNNGG 2 cut(s) 34, 252
BssHII GCGCGC 1 cut(s) 269
BssMI GATC 1 cut(s) 79
BssNI GRCGYC 2 cut(s) 74, 425
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 224, 574
BstACI GRCGYC 2 cut(s) 74, 425
BstC8I GCNNGC 2 cut(s) 271, 588
BstDEI CTNAG 2 cut(s) 380, 594
BstEII GGTNACC 1 cut(s) 574
BstF5I GGATG 1 cut(s) 556
BstFNI CGCG 3 cut(s) 271, 445, 462
BstHHI GCGC 2 cut(s) 271, 273
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 275, 323
BstNI CCWGG 1 cut(s) 36
BstPI GGTNACC 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 348
BstUI CGCG 3 cut(s) 271, 445, 462
BstX2I RGATCY 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 586
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 2 cut(s) 39, 163
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 1 cut(s) 556
BtsIMutI CAGTG 1 cut(s) 372
BtuMI TCGCGA 1 cut(s) 462
Cac8I GCNNGC 2 cut(s) 271, 588
CfoI GCGC 2 cut(s) 271, 273
Cfr13I GGNCC 2 cut(s) 38, 500
CseI GACGC 1 cut(s) 602
CviAII CATG 3 cut(s) 191, 229, 429
CviJI RGCY 6 cut(s) 39, 123, 163, 483, 533, 601
CviKI_1 RGCY 6 cut(s) 39, 123, 163, 483, 533, 601
DdeI CTNAG 2 cut(s) 380, 594
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DraI TTTAAA 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 500
Eco91I GGTNACC 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 38
EcoO65I GGTNACC 1 cut(s) 574
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 3 cut(s) 194, 232, 432
FaqI GGGAC 1 cut(s) 525
FatI CATG 3 cut(s) 190, 228, 428
FokI GGATG 1 cut(s) 543
GlaI GCGC 2 cut(s) 270, 272
HaeIII GGCC 2 cut(s) 39, 163
HapII CCGG 1 cut(s) 314
HgaI GACGC 1 cut(s) 602
HhaI GCGC 2 cut(s) 271, 273
Hin1I GRCGYC 2 cut(s) 74, 425
Hin1II CATG 3 cut(s) 194, 232, 432
Hin6I GCGC 2 cut(s) 269, 271
HinP1I GCGC 2 cut(s) 269, 271
HincII GTYRAC 2 cut(s) 220, 391
HindII GTYRAC 2 cut(s) 220, 391
HinfI GANTC 1 cut(s) 14
HpaI GTTAAC 1 cut(s) 220
HpaII CCGG 1 cut(s) 314
HphI GGTGA 1 cut(s) 568
Hpy166II GTNNAC 2 cut(s) 220, 391
Hpy188I TCNGA 2 cut(s) 79, 527
Hpy188III TCNNGA 3 cut(s) 83, 98, 461
Hpy8I GTNNAC 2 cut(s) 220, 391
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 2 cut(s) 224, 574
HpyCH4IV ACGT 2 cut(s) 74, 425
HpyCH4V TGCA 3 cut(s) 546, 556, 563
HpyF10VI GCNNNNNNNGC 2 cut(s) 275, 323
HpyF3I CTNAG 2 cut(s) 380, 594
HpySE526I ACGT 2 cut(s) 74, 425
Hsp92I GRCGYC 2 cut(s) 74, 425
Hsp92II CATG 3 cut(s) 194, 232, 432
HspAI GCGC 2 cut(s) 269, 271
KspAI GTTAAC 1 cut(s) 220
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 187
LweI GCATC 4 cut(s) 292, 326, 565, 573
MaeII ACGT 2 cut(s) 74, 425
MaeIII GTNAC 2 cut(s) 300, 574
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 5 cut(s) 60, 98, 278, 312, 361
MfeI CAATTG 1 cut(s) 349
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 5 cut(s) 93, 199, 264, 349, 435
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 3 cut(s) 51, 273, 502
Mph1103I ATGCAT 1 cut(s) 558
MseI TTAA 4 cut(s) 117, 198, 219, 404
MslI CAYNNNNRTG 1 cut(s) 581
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 36
MunI CAATTG 1 cut(s) 349
Mva1269I GAATGC 1 cut(s) 362
MvaI CCWGG 1 cut(s) 36
MvnI CGCG 3 cut(s) 271, 445, 462
MwoI GCNNNNNNNGC 2 cut(s) 275, 323
NdeII GATC 1 cut(s) 79
NlaIII CATG 3 cut(s) 194, 232, 432
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 2 cut(s) 300, 574
NruI TCGCGA 1 cut(s) 462
NsiI ATGCAT 1 cut(s) 558
PauI GCGCGC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 2 cut(s) 578, 587
PctI GAATGC 1 cut(s) 362
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PshBI ATTAAT 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 34
PspEI GGTNACC 1 cut(s) 574
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 2 cut(s) 38, 500
PsuI RGATCY 1 cut(s) 79
PteI GCGCGC 1 cut(s) 269
RruI TCGCGA 1 cut(s) 462
RseI CAYNNNNRTG 1 cut(s) 581
SaqAI TTAA 4 cut(s) 117, 198, 219, 404
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 2 cut(s) 38, 500
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 1 cut(s) 348
SetI ASST 4 cut(s) 77, 125, 428, 603
SfaNI GCATC 4 cut(s) 292, 326, 565, 573
SinI GGWCC 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 581
Sse9I AATT 5 cut(s) 93, 199, 264, 349, 435
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 2 cut(s) 224, 574
TaiI ACGT 2 cut(s) 77, 428
TaqI TCGA 4 cut(s) 12, 71, 84, 477
TasI AATT 5 cut(s) 93, 199, 264, 349, 435
Tru1I TTAA 4 cut(s) 117, 198, 219, 404
Tru9I TTAA 4 cut(s) 117, 198, 219, 404
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 2 cut(s) 300, 574
Tsp45I GTSAC 2 cut(s) 300, 574
TspGWI ACGGA 1 cut(s) 319
TspRI CASTG 1 cut(s) 379
VpaK11BI GGWCC 1 cut(s) 500
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 2 cut(s) 93, 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 502
ZraI GACGTC 2 cut(s) 75, 426
Zsp2I ATGCAT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.