Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010911.1

Orthogroup ID

OG0004360

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2464

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010911.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 635 bp

atggaggcggaggacaagaagaagaagaagaggaacaagaataagaagaagaacaacaaggccaccgacgatgtccccgtcgcggagaacagcagccaagtttcatcgtccgccgccgccgccgccgatactatttccgaagatgtccagatttccggcaatggtcaagtttcagaggccgctgataatgctgtgcaatgtgtagatgcgaatccgattaggcatgagaatggcaccgaacaacgtgaaaagattaaacatctacagagtgatagagatacctggattctaaaggaggattcatttaaagaaatgatagcaactcagacagataatattgctagactacgagcacaggtgttggaattggagcaatccaggaataatcttgtacaagaaaaccaacagctgatgggaaatttatctagtttagagttgcaaattaaggatcttgagagtgtttcttctaatcgctcatcagttgaaggtgcaaagcatacttcagaacgtgaagatctgaactcgcaaattgaagcagcatgtgcactggttgagaaattaattacagagaatgcagaccttgttgaaaaggtgaagagcttcccctccatgatttctgcaggagtaatgtgtac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.37

Weight (kDa)

5.08

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38580 AT2G38580 AT2G38580
fragaria_vesca	FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531
malus_domestica	MD12G1191100.v1.1
prunus_persica	Prupe.6G296200_v2.0.a1 Prupe.6G296200_v2.0.a1
pyrus_communis	pycom04g15590 pycom12g17830
rosa_chinensis	RchiOBHm_Chr3g0460131
rosa_laevigata	RLG00000025041
rosa_multiflora	Rmu_sc0000449.1_g000051 Rmu_sc0010911.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419810
rosa_rugosa	Rorug03G0040200 Rorug03G0040300 Rorug03G0040400
rosa_samantha	Rh3AG098200 Rh3BG101300 Rh3CG103400 Rh3DG102600 Rh5BG300100 Rh5DG309000 Rh7DG221400
rosa_wichuraiana	Rw3G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AccII	CGCG	1 cut(s)	83
AciI	CCGC	8 cut(s)	8, 83, 111, 114, 117, 120, 123, 180
AclWI	GGATC	1 cut(s)	456
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	2 cut(s)	393, 634
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	3 cut(s)	485, 533, 587
AjnI	CCWGG	2 cut(s)	281, 377
AluBI	AGCT	2 cut(s)	409, 600
AluI	AGCT	2 cut(s)	409, 600
Alw21I	GWGCWC	2 cut(s)	355, 547
Alw44I	GTGCAC	1 cut(s)	543
AlwI	GGATC	1 cut(s)	456
AoxI	GGCC	2 cut(s)	60, 177
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	2 cut(s)	93, 536
ApoI	RAATTY	1 cut(s)	418
AseI	ATTAAT	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	599
AsuHPI	GGTGA	1 cut(s)	604
BaeGI	GKGCMC	1 cut(s)	547
BanI	GGYRCC	1 cut(s)	233
Bbv12I	GWGCWC	2 cut(s)	355, 547
BbvI	GCAGC	2 cut(s)	105, 548
BccI	CCATC	1 cut(s)	406
BciT130I	CCWGG	2 cut(s)	283, 379
BfaI	CTAG	2 cut(s)	342, 426
BfmI	CTRYAG	2 cut(s)	263, 618
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	7 cut(s)	94, 114, 117, 120, 123, 180, 537
BlsI	GCNGC	7 cut(s)	95, 115, 118, 121, 124, 181, 538
Bme1390I	CCNGG	2 cut(s)	283, 379
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	283, 379
BmsI	GCATC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	552
Bse3DI	GCAATG	2 cut(s)	166, 203
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	283, 379
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	2 cut(s)	166, 203
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	552
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	2 cut(s)	105, 548
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	62, 179
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	2 cut(s)	355, 547
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	62, 179
Bsp1286I	GDGCHC	2 cut(s)	355, 547
Bsp1407I	TGTACA	1 cut(s)	391
Bsp143I	GATC	2 cut(s)	448, 514
BspACI	CCGC	8 cut(s)	8, 83, 111, 114, 117, 120, 123, 180
BspANI	GGCC	2 cut(s)	62, 179
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	1 cut(s)	456
BspQI	GCTCTTC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	166, 203
BsrGI	TGTACA	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	552
BssMI	GATC	2 cut(s)	448, 514
Bst2UI	CCWGG	2 cut(s)	283, 379
Bst6I	CTCTTC	2 cut(s)	23, 590
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstAUI	TGTACA	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	451, 517
BstMBI	GATC	2 cut(s)	448, 514
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 122, 188, 542
BstNI	CCWGG	2 cut(s)	283, 379
BstNSI	RCATGY	1 cut(s)	543
BstSCI	CCNGG	2 cut(s)	281, 377
BstSFI	CTRYAG	2 cut(s)	263, 618
BstSLI	GKGCMC	1 cut(s)	547
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	105, 548
BstX2I	RGATCY	2 cut(s)	448, 514
BstYI	RGATCY	2 cut(s)	448, 514
BsuRI	GGCC	2 cut(s)	62, 179
BtsIMutI	CAGTG	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	392, 633
CviAII	CATG	3 cut(s)	224, 540, 610
CviJI	RGCY	5 cut(s)	62, 96, 179, 409, 600
CviKI_1	RGCY	5 cut(s)	62, 96, 179, 409, 600
CviQI	GTAC	2 cut(s)	392, 633
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	2 cut(s)	450, 516
DpnII	GATC	2 cut(s)	448, 514
DraI	TTTAAA	1 cut(s)	307
Eam1104I	CTCTTC	2 cut(s)	23, 590
EarI	CTCTTC	2 cut(s)	23, 590
EciI	GGCGGA	2 cut(s)	23, 100
Eco57I	CTGAAG	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	281, 377
FaeI	CATG	3 cut(s)	227, 543, 613
FaiI	YATR	4 cut(s)	225, 498, 541, 611
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	223, 539, 609
Fnu4HI	GCNGC	7 cut(s)	94, 114, 117, 120, 123, 180, 537
Fsp4HI	GCNGC	7 cut(s)	94, 114, 117, 120, 123, 180, 537
FspBI	CTAG	2 cut(s)	342, 426
GluI	GCNGC	7 cut(s)	94, 114, 117, 120, 123, 180, 537
HaeIII	GGCC	2 cut(s)	62, 179
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	3 cut(s)	227, 543, 613
HinfI	GANTC	3 cut(s)	211, 286, 299
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	2 cut(s)	545, 633
Hpy188I	TCNGA	6 cut(s)	139, 175, 216, 327, 505, 519
Hpy188III	TCNNGA	2 cut(s)	148, 452
Hpy8I	GTNNAC	2 cut(s)	545, 633
Hpy99I	CGWCG	2 cut(s)	71, 83
HpyAV	CCTTC	1 cut(s)	479
HpyCH4IV	ACGT	2 cut(s)	244, 508
HpyCH4V	TGCA	6 cut(s)	196, 439, 491, 545, 575, 620
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 122, 188, 542
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	2 cut(s)	244, 508
Hsp92II	CATG	3 cut(s)	227, 543, 613
Kzo9I	GATC	2 cut(s)	448, 514
LguI	GCTCTTC	1 cut(s)	590
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	9 cut(s)	161, 169, 268, 295, 341, 364, 391, 533, 606
Lsp1109I	GCAGC	2 cut(s)	105, 548
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	342, 426
MaeII	ACGT	2 cut(s)	244, 508
MalI	GATC	2 cut(s)	450, 516
MboI	GATC	2 cut(s)	448, 514
MflI	RGATCY	2 cut(s)	448, 514
MhlI	GDGCHC	2 cut(s)	355, 547
MluCI	AATT	6 cut(s)	365, 418, 441, 528, 557, 561
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	5 cut(s)	4, 24, 169, 289, 616
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	4 cut(s)	255, 306, 444, 560
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	2 cut(s)	182, 409
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	283, 379
Mva1269I	GAATGC	1 cut(s)	577
MvaI	CCWGG	2 cut(s)	283, 379
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	4 cut(s)	119, 122, 188, 542
NdeII	GATC	2 cut(s)	448, 514
NlaIII	CATG	3 cut(s)	227, 543, 613
NlaIV	GGNNCC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	543
PciSI	GCTCTTC	1 cut(s)	590
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	3 cut(s)	211, 286, 299
PflFI	GACNNNGTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	377
PkrI	GCNGC	7 cut(s)	95, 115, 118, 121, 124, 181, 538
PshBI	ATTAAT	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	281, 377
PspGI	CCWGG	2 cut(s)	281, 377
PspN4I	GGNNCC	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	622
PsuI	RGATCY	2 cut(s)	448, 514
PsyI	GACNNNGTC	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	409
RsaI	GTAC	2 cut(s)	393, 634
RsaNI	GTAC	2 cut(s)	392, 633
RseI	CAYNNNNRTG	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	590
SaqAI	TTAA	4 cut(s)	255, 306, 444, 560
SatI	GCNGC	7 cut(s)	94, 114, 117, 120, 123, 180, 537
Sau3AI	GATC	2 cut(s)	448, 514
ScrFI	CCNGG	2 cut(s)	283, 379
SduI	GDGCHC	2 cut(s)	355, 547
SetI	ASST	9 cut(s)	247, 284, 360, 411, 490, 511, 582, 594, 602
SfaNI	GCATC	1 cut(s)	196
SfcI	CTRYAG	2 cut(s)	263, 618
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	6 cut(s)	365, 418, 441, 528, 557, 561
SsiI	CCGC	8 cut(s)	8, 83, 111, 114, 117, 120, 123, 180
SspI	AATATT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	342, 426
StyD4I	CCNGG	2 cut(s)	281, 377
TaiI	ACGT	2 cut(s)	247, 511
TasI	AATT	6 cut(s)	365, 418, 441, 528, 557, 561
TatI	WGTACW	1 cut(s)	391
TauI	GCSGC	5 cut(s)	116, 119, 122, 125, 182
TfiI	GAWTC	3 cut(s)	211, 286, 299
Tru1I	TTAA	4 cut(s)	255, 306, 444, 560
Tru9I	TTAA	4 cut(s)	255, 306, 444, 560
TscAI	CASTG	1 cut(s)	552
TseI	GCWGC	2 cut(s)	93, 536
TspDTI	ATGAA	2 cut(s)	93, 291
TspRI	CASTG	1 cut(s)	552
Tth111I	GACNNNGTC	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	543
VspI	ATTAAT	1 cut(s)	560
XapI	RAATTY	1 cut(s)	418
XceI	RCATGY	1 cut(s)	543
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	2 cut(s)	342, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.