Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004360

Physical Location & Seq

Genomic Coordinates Reverse (-)

7687020 .. 7690816

Gene Structure 3797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGGAGGCGGAGGACAAGAAGAAGAAGAAGAGGAACAAGAATAAGAAGAAGAACAACAAGGCCACCGACGATGTCCCCGTCGCGGAGAACAGCAGCCAAGTTTCATCGTCCGCCGCCGCCGATAATACTTCCGAAGATGTCCAGATTTCCGGCAATGGTCAAGTTTCAGAGGCCGCTGATAATGCTGTGCAATATGTAGATGCGAATCCGATTAGGCATGAGAATGGCACCGAACAACGTTCGTTATTAGCTGAATCTGAGGAAAGGCATTGGCTTCAAAAAGAGGCTGAGTTGGAAGAAATGATCAAGCAATTAGAAAAAGAAAAAGACTTGCAAATGCACAAGGAGGCTACATTTGAGGGTACTATTAAGCAATTACAGAATGAAAAGGATTCAAGTGAACAGAATGTGGCTACGTTAGAAGGTAAGATAAAACTGTTACGGGATGAAAAAGATGCACATATGCAGAAAGAGGCTACGTTAGAAGATACAATAAAACTATTACGGGAGGAAACTGATTCACACATTCATAAAGAGGCCATCCTGCAGAAGGAAATTGTACAATTACGGAGTGAAACAGATTCCTGGCTTCAAAAGGAGGTTGGGTTGGAGGAGAAAATCAGTCGACTAGTAGCCGAAAAGTCCACTTTGGAATCTGAAGAGGCAAGCTTACAGGAAAAGATTAAACATCTACAGAGTGATAGGGATACCTGGATTCTAAAGGAGGATTCATTTAAAGAAATGATAGCAACTCAGACAGATAATATTGCTAGACTACGAGCACAGGTGTTGGAATTGGAGCAATCCAGGAATAATCTTGTACAAGAAAACCAACAGCTGATGGGAAATTTATCTAGTCTAGAGTTGCAAATTAAGGATCTTGAGAGTGTTTCTTCTAATCGCTCATCAGTTGAAGGTGCAAAGCATACTTCAGAACGTGAAGATCTGAACTCGCAAATTGAAGCAGCATGTGCACTGGTTGAGAAATTAATTACAGAGAATGCAGACCTTGTTGAAAAGGTGAACGAGTTGTATGTTGAACTTGAACGGCATAGTGCAAAAGATGGGCTTCCTTCAACTACAACATTTAATACAACAGTTCTACCAGTTGAAACTCTTGGTACCATCAATTCCATGTCCAGATCCGGTGAGGATATGTCTACATCAGGCCAGAAGCTTTATTCATCAGAAGTTGTGCCGCTCAAAGAGGAGATACATAATAATGGTAACATGGATTCCCAGCAGGCTGCTTCACTGCAAAGTAATGGTAATTTGGATATTCAGCATCCTGAATCAGTTCCAAATTCAACCATATCGTATGAATCCAGTGAAAGTGAAATTGTGCAAATTCCTTTGGACGCCAATGAAGTTCGGGATCTAGAATCGCAGTCAGCCAGAGAGGTTAAAAACGAAGCTGTCTCTCTTACAGATGCTCCCCTAATTGGTGCACCTTTCCGGTTAGTGTCGTTTGTTGCTAGATATGTCAGCGGTGCAGACTTGGTTAACAAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

504

Amino Acids

56.39

Weight (kDa)

4.79

Isoelectric Point (pI)

58.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38580 AT2G38580 AT2G38580
fragaria_vesca	FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531
malus_domestica	MD12G1191100.v1.1
prunus_persica	Prupe.6G296200_v2.0.a1 Prupe.6G296200_v2.0.a1
pyrus_communis	pycom04g15590 pycom12g17830
rosa_chinensis	RchiOBHm_Chr3g0460131
rosa_laevigata	RLG00000025041
rosa_multiflora	Rmu_sc0000449.1_g000051 Rmu_sc0010911.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419810
rosa_rugosa	Rorug03G0040200 Rorug03G0040300 Rorug03G0040400
rosa_samantha	Rh3AG098200 Rh3BG101300 Rh3CG103400 Rh3DG102600 Rh5BG300100 Rh5DG309000 Rh7DG221400
rosa_wichuraiana	Rw3G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1121
AccB1I	GGYRCC	2 cut(s)	227, 1121
AccBSI	CCGCTC	1 cut(s)	1201
AccI	GTMKAC	2 cut(s)	625, 1160
AccII	CGCG	1 cut(s)	83
AciI	CCGC	8 cut(s)	8, 83, 111, 114, 117, 174, 1199, 1488
AclI	AACGTT	1 cut(s)	238
AclWI	GGATC	3 cut(s)	885, 1137, 1383
AcsI	RAATTY	3 cut(s)	847, 1303, 1347
AcuI	CTGAAG	2 cut(s)	678, 915
AcyI	GRCGYC	1 cut(s)	1359
AfaI	GTAC	4 cut(s)	364, 561, 822, 1123
AfiI	CCNNNNNNNGG	3 cut(s)	82, 550, 1442
AhlI	ACTAGT	1 cut(s)	628
AjnI	CCWGG	3 cut(s)	584, 710, 806
AluBI	AGCT	5 cut(s)	251, 669, 838, 1177, 1415
AluI	AGCT	5 cut(s)	251, 669, 838, 1177, 1415
Alw21I	GWGCWC	3 cut(s)	784, 976, 1450
Alw26I	GTCTC	1 cut(s)	1423
Alw44I	GTGCAC	2 cut(s)	972, 1446
AlwI	GGATC	3 cut(s)	885, 1137, 1383
AoxI	GGCC	4 cut(s)	60, 171, 537, 1168
ApaLI	GTGCAC	2 cut(s)	972, 1446
ApeKI	GCWGC	3 cut(s)	93, 965, 1247
ApoI	RAATTY	3 cut(s)	847, 1303, 1347
AseI	ATTAAT	1 cut(s)	989
Asp700I	GAANNNNTTC	1 cut(s)	1296
Asp718I	GGTACC	1 cut(s)	1121
AsuHPI	GGTGA	2 cut(s)	1033, 1160
BaeGI	GKGCMC	2 cut(s)	976, 1450
BanI	GGYRCC	2 cut(s)	227, 1121
Bbv12I	GWGCWC	3 cut(s)	784, 976, 1450
BbvI	GCAGC	3 cut(s)	105, 977, 1234
BccI	CCATC	4 cut(s)	548, 835, 1058, 1133
BceAI	ACGGC	1 cut(s)	1064
BciT130I	CCWGG	3 cut(s)	586, 712, 808
BciVI	GTATCC	1 cut(s)	700
BclI	TGATCA	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	1423
BcuI	ACTAGT	1 cut(s)	628
BfaI	CTAG	6 cut(s)	629, 771, 855, 860, 1379, 1476
BfmI	CTRYAG	2 cut(s)	545, 692
BfuI	GTATCC	1 cut(s)	700
BglII	AGATCT	1 cut(s)	943
BisI	GCNGC	7 cut(s)	94, 114, 117, 174, 966, 1199, 1248
BlsI	GCNGC	7 cut(s)	95, 115, 118, 175, 967, 1200, 1249
Bme1390I	CCNGG	3 cut(s)	586, 712, 808
BmiI	GGNNCC	2 cut(s)	229, 1123
BmrFI	CCNGG	3 cut(s)	586, 712, 808
BmsI	GCATC	4 cut(s)	190, 445, 1294, 1420
BpuEI	CTTGAG	1 cut(s)	902
BsaBI	GATNNNNATC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	1359
BsaWI	WCCGGW	2 cut(s)	1145, 1455
BsaXI	ACNNNNNCTCC	4 cut(s)	590, 620, 1417, 1447
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 550, 1442
Bse1I	ACTGG	3 cut(s)	981, 1106, 1326
Bse3DI	GCAATG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	586, 712, 808
BseGI	GGATG	3 cut(s)	451, 540, 1285
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	3 cut(s)	82, 550, 1442
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	3 cut(s)	249, 279, 767
BseNI	ACTGG	3 cut(s)	981, 1106, 1326
BseRI	GAGGAG	2 cut(s)	626, 1223
BseSI	GKGCMC	2 cut(s)	976, 1450
BseXI	GCAGC	3 cut(s)	105, 977, 1234
BseYI	CCCAGC	1 cut(s)	1239
BsgI	GTGCAG	1 cut(s)	1512
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	4 cut(s)	62, 173, 539, 1170
BshNI	GGYRCC	2 cut(s)	227, 1121
BsiHKAI	GWGCWC	3 cut(s)	784, 976, 1450
BsiSI	CCGG	3 cut(s)	150, 1146, 1456
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	82, 550, 1442
BsmAI	GTCTC	1 cut(s)	1423
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	1006
BsnI	GGCC	4 cut(s)	62, 173, 539, 1170
Bsp1286I	GDGCHC	3 cut(s)	784, 976, 1450
Bsp1407I	TGTACA	2 cut(s)	559, 820
Bsp143I	GATC	5 cut(s)	303, 877, 943, 1142, 1375
BspACI	CCGC	8 cut(s)	8, 83, 111, 114, 117, 174, 1199, 1488
BspANI	GGCC	4 cut(s)	62, 173, 539, 1170
BspCNI	CTCAG	3 cut(s)	250, 280, 766
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	229, 1123
BspMAI	CTGCAG	1 cut(s)	549
BspPI	GGATC	3 cut(s)	885, 1137, 1383
BspT107I	GGYRCC	2 cut(s)	227, 1121
BsrBI	CCGCTC	1 cut(s)	1201
BsrDI	GCAATG	1 cut(s)	160
BsrGI	TGTACA	2 cut(s)	559, 820
BsrI	ACTGG	3 cut(s)	981, 1106, 1326
BssMI	GATC	5 cut(s)	303, 877, 943, 1142, 1375
BssNI	GRCGYC	1 cut(s)	1359
Bst2UI	CCWGG	3 cut(s)	586, 712, 808
Bst4CI	ACNGT	2 cut(s)	438, 1099
Bst6I	CTCTTC	2 cut(s)	23, 654
BstACI	GRCGYC	1 cut(s)	1359
BstAPI	GCANNNNNTGC	1 cut(s)	971
BstAUI	TGTACA	2 cut(s)	559, 820
BstC8I	GCNNGC	2 cut(s)	667, 1245
BstDEI	CTNAG	3 cut(s)	258, 288, 753
BstENI	CCTNNNNNAGG	1 cut(s)	548
BstF5I	GGATG	3 cut(s)	451, 540, 1285
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	5 cut(s)	306, 880, 946, 1145, 1378
BstMAI	GTCTC	1 cut(s)	1423
BstMBI	GATC	5 cut(s)	303, 877, 943, 1142, 1375
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 971
BstNI	CCWGG	3 cut(s)	586, 712, 808
BstNSI	RCATGY	1 cut(s)	972
BstSCI	CCNGG	3 cut(s)	584, 710, 806
BstSFI	CTRYAG	2 cut(s)	545, 692
BstSLI	GKGCMC	2 cut(s)	976, 1450
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	105, 977, 1234
BstX2I	RGATCY	4 cut(s)	877, 943, 1142, 1375
BstYI	RGATCY	4 cut(s)	877, 943, 1142, 1375
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	4 cut(s)	62, 173, 539, 1170
BtsCI	GGATG	3 cut(s)	451, 540, 1285
BtsI	GCAGTG	1 cut(s)	1253
BtsIMutI	CAGTG	3 cut(s)	974, 1253, 1333
Cac8I	GCNNGC	2 cut(s)	667, 1245
CseI	GACGC	1 cut(s)	1367
Csp6I	GTAC	4 cut(s)	363, 560, 821, 1122
CviAII	CATG	4 cut(s)	218, 969, 1135, 1231
CviQI	GTAC	4 cut(s)	363, 560, 821, 1122
DdeI	CTNAG	3 cut(s)	258, 288, 753
DpnI	GATC	5 cut(s)	305, 879, 945, 1144, 1377
DpnII	GATC	5 cut(s)	303, 877, 943, 1142, 1375
DraI	TTTAAA	1 cut(s)	736
Eam1104I	CTCTTC	2 cut(s)	23, 654
EarI	CTCTTC	2 cut(s)	23, 654
EciI	GGCGGA	2 cut(s)	23, 100
Eco57I	CTGAAG	2 cut(s)	678, 915
EcoNI	CCTNNNNNAGG	1 cut(s)	548
EcoRII	CCWGG	3 cut(s)	584, 710, 806
FaeI	CATG	4 cut(s)	221, 972, 1138, 1234
FalI	AAGNNNNNCTT	2 cut(s)	1053, 1085
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	4 cut(s)	217, 968, 1134, 1230
FauNDI	CATATG	1 cut(s)	462
FbaI	TGATCA	1 cut(s)	303
FblI	GTMKAC	2 cut(s)	625, 1160
Fnu4HI	GCNGC	7 cut(s)	94, 114, 117, 174, 966, 1199, 1248
FokI	GGATG	3 cut(s)	458, 527, 1272
Fsp4HI	GCNGC	7 cut(s)	94, 114, 117, 174, 966, 1199, 1248
FspBI	CTAG	6 cut(s)	629, 771, 855, 860, 1379, 1476
GluI	GCNGC	7 cut(s)	94, 114, 117, 174, 966, 1199, 1248
GsaI	CCCAGC	1 cut(s)	1243
HaeIII	GGCC	4 cut(s)	62, 173, 539, 1170
HapII	CCGG	3 cut(s)	150, 1146, 1456
HgaI	GACGC	1 cut(s)	1367
Hin1I	GRCGYC	1 cut(s)	1359
Hin1II	CATG	4 cut(s)	221, 972, 1138, 1234
HincII	GTYRAC	2 cut(s)	626, 1504
HindII	GTYRAC	2 cut(s)	626, 1504
HindIII	AAGCTT	2 cut(s)	667, 1175
HpaI	GTTAAC	1 cut(s)	1504
HpaII	CCGG	3 cut(s)	150, 1146, 1456
HphI	GGTGA	2 cut(s)	1033, 1160
Hpy166II	GTNNAC	8 cut(s)	401, 626, 645, 974, 1024, 1161, 1448, 1504
Hpy188I	TCNGA	9 cut(s)	133, 169, 210, 259, 658, 756, 934, 948, 1189
Hpy188III	TCNNGA	7 cut(s)	142, 860, 881, 1140, 1289, 1373, 1379
Hpy8I	GTNNAC	8 cut(s)	401, 626, 645, 974, 1024, 1161, 1448, 1504
Hpy99I	CGWCG	2 cut(s)	71, 83
HpyAV	CCTTC	4 cut(s)	416, 544, 908, 1083
HpyCH4III	ACNGT	2 cut(s)	438, 1099
HpyCH4IV	ACGT	4 cut(s)	238, 416, 479, 937
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 971
HpyF3I	CTNAG	3 cut(s)	258, 288, 753
HpySE526I	ACGT	4 cut(s)	238, 416, 479, 937
Hsp92I	GRCGYC	1 cut(s)	1359
Hsp92II	CATG	4 cut(s)	221, 972, 1138, 1234
KpnI	GGTACC	1 cut(s)	1125
Ksp22I	TGATCA	1 cut(s)	303
KspAI	GTTAAC	1 cut(s)	1504
Kzo9I	GATC	5 cut(s)	303, 877, 943, 1142, 1375
LmnI	GCTCC	2 cut(s)	799, 1438
Lsp1109I	GCAGC	3 cut(s)	105, 977, 1234
LweI	GCATC	4 cut(s)	190, 445, 1294, 1420
MaeI	CTAG	6 cut(s)	629, 771, 855, 860, 1379, 1476
MaeII	ACGT	4 cut(s)	238, 416, 479, 937
MaeIII	GTNAC	2 cut(s)	438, 1226
MalI	GATC	5 cut(s)	305, 879, 945, 1144, 1377
MbiI	CCGCTC	1 cut(s)	1201
MboI	GATC	5 cut(s)	303, 877, 943, 1142, 1375
MflI	RGATCY	4 cut(s)	877, 943, 1142, 1375
MhlI	GDGCHC	3 cut(s)	784, 976, 1450
MmeI	TCCRAC	3 cut(s)	273, 588, 771
MroXI	GAANNNNTTC	1 cut(s)	1296
MseI	TTAA	8 cut(s)	369, 684, 735, 873, 989, 1089, 1404, 1503
MslI	CAYNNNNRTG	2 cut(s)	222, 1221
MspA1I	CMGCKG	3 cut(s)	176, 838, 1488
MspI	CCGG	3 cut(s)	150, 1146, 1456
MspR9I	CCNGG	3 cut(s)	586, 712, 808
Mva1269I	GAATGC	1 cut(s)	1006
MvaI	CCWGG	3 cut(s)	586, 712, 808
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	182, 971
NdeI	CATATG	1 cut(s)	462
NdeII	GATC	5 cut(s)	303, 877, 943, 1142, 1375
NlaIII	CATG	4 cut(s)	221, 972, 1138, 1234
NlaIV	GGNNCC	2 cut(s)	229, 1123
NspI	RCATGY	1 cut(s)	972
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	1006
PdmI	GAANNNNTTC	1 cut(s)	1296
PflFI	GACNNNGTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	806
PkrI	GCNGC	7 cut(s)	95, 115, 118, 175, 967, 1200, 1249
PshBI	ATTAAT	1 cut(s)	989
Psp1406I	AACGTT	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	584, 710, 806
PspFI	CCCAGC	1 cut(s)	1239
PspGI	CCWGG	3 cut(s)	584, 710, 806
PspN4I	GGNNCC	2 cut(s)	229, 1123
PstI	CTGCAG	1 cut(s)	549
PsuI	RGATCY	4 cut(s)	877, 943, 1142, 1375
PsyI	GACNNNGTC	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	838
RsaI	GTAC	4 cut(s)	364, 561, 822, 1123
RsaNI	GTAC	4 cut(s)	363, 560, 821, 1122
RseI	CAYNNNNRTG	2 cut(s)	222, 1221
SalI	GTCGAC	1 cut(s)	624
SaqAI	TTAA	8 cut(s)	369, 684, 735, 873, 989, 1089, 1404, 1503
SatI	GCNGC	7 cut(s)	94, 114, 117, 174, 966, 1199, 1248
Sau3AI	GATC	5 cut(s)	303, 877, 943, 1142, 1375
ScrFI	CCNGG	3 cut(s)	586, 712, 808
SduI	GDGCHC	3 cut(s)	784, 976, 1450
SfaNI	GCATC	4 cut(s)	190, 445, 1294, 1420
SfcI	CTRYAG	2 cut(s)	545, 692
SmiMI	CAYNNNNRTG	2 cut(s)	222, 1221
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SpeI	ACTAGT	1 cut(s)	628
SsiI	CCGC	8 cut(s)	8, 83, 111, 114, 117, 174, 1199, 1488
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	6 cut(s)	629, 771, 855, 860, 1379, 1476
StyD4I	CCNGG	3 cut(s)	584, 710, 806
TaaI	ACNGT	2 cut(s)	438, 1099
TaiI	ACGT	4 cut(s)	241, 419, 482, 940
TaqI	TCGA	1 cut(s)	625
TatI	WGTACW	2 cut(s)	559, 820
TauI	GCSGC	4 cut(s)	116, 119, 176, 1201
Tru1I	TTAA	8 cut(s)	369, 684, 735, 873, 989, 1089, 1404, 1503
Tru9I	TTAA	8 cut(s)	369, 684, 735, 873, 989, 1089, 1404, 1503
TscAI	CASTG	3 cut(s)	981, 1260, 1333
TseI	GCWGC	3 cut(s)	93, 965, 1247
TspDTI	ATGAA	8 cut(s)	93, 399, 462, 518, 720, 1173, 1335, 1380
TspGWI	ACGGA	1 cut(s)	583
TspRI	CASTG	3 cut(s)	981, 1260, 1333
Tth111I	GACNNNGTC	1 cut(s)	71
VneI	GTGCAC	2 cut(s)	972, 1446
VspI	ATTAAT	1 cut(s)	989
XagI	CCTNNNNNAGG	1 cut(s)	548
XapI	RAATTY	3 cut(s)	847, 1303, 1347
XbaI	TCTAGA	2 cut(s)	859, 1378
XceI	RCATGY	1 cut(s)	972
XmiI	GTMKAC	2 cut(s)	625, 1160
XmnI	GAANNNNTTC	1 cut(s)	1296
XspI	CTAG	6 cut(s)	629, 771, 855, 860, 1379, 1476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.