Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0004360

Physical Location & Seq

Genomic Coordinates Reverse (-)

8275793 .. 8279830

Gene Structure 4038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG102600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAGGCGGAGGACAAGAAGAAGAAGAAGAGGAACAAGAATAAGAAGAAGAACAACAAGGCCACCGACGATGTCCCCGTCGCGGAGAACAGCAGCCAAGTTTCATCGTCCGCCGCCGCCGATAATACTTCCGAAGATGTCCAGATTTCCGGCAATGGTCAAGTTTCGGAGGCCGCTGATAATGCTGCGCAATATGTAGATGCGAATCCGATTAGGCATGAGAATGGCACCGAACAACGTTCGTTATTAGCTGAATCTGAGGAAAGGCATTGGCTTCAAAAAGAGGCTGAGTTGGAAGAAATGATCAAGCAATTAGAAAAAGAAAAAGACTTGCAAATGCACAAGGAGGCTACATTTGAGGGTACTATTAAGCAATTACAGAATGAAAAGGATTCAAGTGAACAGAATGTGGCTACGTTAGAAGGTACGATCAATCTATTACGGGATGAAAAAGATGCACATATGCAGAAAGAGGCTACGTTAGAAGATACAATAAAACTATTACGGGAGGAAACTGATTCACACATTCATAAAGAGGCCATCCTGCAGAAGGAAATTGTACAATTACGGAGTGAAACAGATTCCTGGCTTCAAAAGGAGGTTGGGTTGGAGGAGAAAATCAGTCGACTAGTAGCCGAAAAGTCCACTTTGGAATCTGAAGAGGCAAGCTTACAGGAAAAGATTAAACATCTACAGAGTGATAGGGATACCTGGATTCTAAAGGAGGATTCATTTAAAGAAATGATAGCAACTCAGACAGATAATATTGCTAGACTACGAGCACAGGTGTTGGAATTGGAGCAATCCAGGAATAATCTTGTACAAGAAAACCAACAGCTGATGGGAAATTTATCTAGTCTAGAGTTGCAAATTAAGGATCTTGAGAGTGTTTCTTCTAATCGCTCATCAGTTGAAGGTGCAAAGCATACTTCAGAACGTGAAGATCTGAACTCGCAAATTGAAGCAGCATGTGCACTGGTTGAGAAATTAATTACAGAGAATGCAGACCTTGTTGAAAAGGTGAAGAGCTTCCCCTCCATGATTTCTGCAGGAGTAATGTGTGAACGAGTTGTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

40.59

Weight (kDa)

4.89

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38580 AT2G38580 AT2G38580
fragaria_vesca	FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531
malus_domestica	MD12G1191100.v1.1
prunus_persica	Prupe.6G296200_v2.0.a1 Prupe.6G296200_v2.0.a1
pyrus_communis	pycom04g15590 pycom12g17830
rosa_chinensis	RchiOBHm_Chr3g0460131
rosa_laevigata	RLG00000025041
rosa_multiflora	Rmu_sc0000449.1_g000051 Rmu_sc0010911.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419810
rosa_rugosa	Rorug03G0040200 Rorug03G0040300 Rorug03G0040400
rosa_samantha	Rh3AG098200 Rh3BG101300 Rh3CG103400 Rh3DG102600 Rh5BG300100 Rh5DG309000 Rh7DG221400
rosa_wichuraiana	Rw3G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	625
AccII	CGCG	1 cut(s)	83
AciI	CCGC	6 cut(s)	8, 83, 111, 114, 117, 174
AclI	AACGTT	1 cut(s)	238
AclWI	GGATC	1 cut(s)	885
AcsI	RAATTY	1 cut(s)	847
AcuI	CTGAAG	2 cut(s)	678, 915
AfaI	GTAC	4 cut(s)	364, 427, 561, 822
AfiI	CCNNNNNNNGG	2 cut(s)	82, 550
AgsI	TTSAA	6 cut(s)	278, 396, 593, 914, 962, 1016
AhlI	ACTAGT	1 cut(s)	628
AjnI	CCWGG	3 cut(s)	584, 710, 806
AluBI	AGCT	4 cut(s)	251, 669, 838, 1029
AluI	AGCT	4 cut(s)	251, 669, 838, 1029
Alw21I	GWGCWC	2 cut(s)	784, 976
Alw44I	GTGCAC	1 cut(s)	972
AlwI	GGATC	1 cut(s)	885
AoxI	GGCC	3 cut(s)	60, 171, 537
ApaLI	GTGCAC	1 cut(s)	972
ApeKI	GCWGC	3 cut(s)	93, 185, 965
ApoI	RAATTY	1 cut(s)	847
AseI	ATTAAT	1 cut(s)	989
Asp700I	GAANNNNTTC	1 cut(s)	1028
AspLEI	GCGC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	1033
BaeGI	GKGCMC	1 cut(s)	976
BanI	GGYRCC	1 cut(s)	227
Bbv12I	GWGCWC	2 cut(s)	784, 976
BbvI	GCAGC	3 cut(s)	105, 172, 977
BccI	CCATC	2 cut(s)	548, 835
BciT130I	CCWGG	3 cut(s)	586, 712, 808
BciVI	GTATCC	1 cut(s)	700
BclI	TGATCA	1 cut(s)	303
BcuI	ACTAGT	1 cut(s)	628
BfaI	CTAG	4 cut(s)	629, 771, 855, 860
BfmI	CTRYAG	3 cut(s)	545, 692, 1047
BfuI	GTATCC	1 cut(s)	700
BglII	AGATCT	1 cut(s)	943
BisI	GCNGC	6 cut(s)	94, 114, 117, 174, 186, 966
BlsI	GCNGC	6 cut(s)	95, 115, 118, 175, 187, 967
Bme1390I	CCNGG	3 cut(s)	586, 712, 808
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	3 cut(s)	586, 712, 808
BmsI	GCATC	2 cut(s)	190, 445
BpuEI	CTTGAG	1 cut(s)	902
BsaBI	GATNNNNATC	1 cut(s)	204
BsaXI	ACNNNNNCTCC	2 cut(s)	590, 620
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 550
Bse1I	ACTGG	1 cut(s)	981
Bse3DI	GCAATG	1 cut(s)	160
Bse8I	GATNNNNATC	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	586, 712, 808
BseGI	GGATG	2 cut(s)	451, 540
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	82, 550
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	3 cut(s)	249, 279, 767
BseNI	ACTGG	1 cut(s)	981
BseRI	GAGGAG	1 cut(s)	626
BseSI	GKGCMC	1 cut(s)	976
BseXI	GCAGC	3 cut(s)	105, 172, 977
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	3 cut(s)	62, 173, 539
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	2 cut(s)	784, 976
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	82, 550
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	1006
BsnI	GGCC	3 cut(s)	62, 173, 539
Bsp1286I	GDGCHC	2 cut(s)	784, 976
Bsp1407I	TGTACA	2 cut(s)	559, 820
Bsp143I	GATC	4 cut(s)	303, 429, 877, 943
BspACI	CCGC	6 cut(s)	8, 83, 111, 114, 117, 174
BspANI	GGCC	3 cut(s)	62, 173, 539
BspCNI	CTCAG	3 cut(s)	250, 280, 766
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	229
BspMAI	CTGCAG	2 cut(s)	549, 1051
BspPI	GGATC	1 cut(s)	885
BspQI	GCTCTTC	1 cut(s)	1019
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	160
BsrGI	TGTACA	2 cut(s)	559, 820
BsrI	ACTGG	1 cut(s)	981
BssMI	GATC	4 cut(s)	303, 429, 877, 943
Bst2UI	CCWGG	3 cut(s)	586, 712, 808
Bst6I	CTCTTC	3 cut(s)	23, 654, 1019
BstAPI	GCANNNNNTGC	1 cut(s)	971
BstAUI	TGTACA	2 cut(s)	559, 820
BstC8I	GCNNGC	1 cut(s)	667
BstDEI	CTNAG	3 cut(s)	258, 288, 753
BstENI	CCTNNNNNAGG	1 cut(s)	548
BstF5I	GGATG	2 cut(s)	451, 540
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	4 cut(s)	306, 432, 880, 946
BstMBI	GATC	4 cut(s)	303, 429, 877, 943
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 971
BstNI	CCWGG	3 cut(s)	586, 712, 808
BstNSI	RCATGY	1 cut(s)	972
BstSCI	CCNGG	3 cut(s)	584, 710, 806
BstSFI	CTRYAG	3 cut(s)	545, 692, 1047
BstSLI	GKGCMC	1 cut(s)	976
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	105, 172, 977
BstX2I	RGATCY	2 cut(s)	877, 943
BstYI	RGATCY	2 cut(s)	877, 943
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	3 cut(s)	62, 173, 539
BtsCI	GGATG	2 cut(s)	451, 540
BtsIMutI	CAGTG	1 cut(s)	974
Cac8I	GCNNGC	1 cut(s)	667
CfoI	GCGC	1 cut(s)	190
Csp6I	GTAC	4 cut(s)	363, 426, 560, 821
CviAII	CATG	3 cut(s)	218, 969, 1039
CviQI	GTAC	4 cut(s)	363, 426, 560, 821
DdeI	CTNAG	3 cut(s)	258, 288, 753
DpnI	GATC	4 cut(s)	305, 431, 879, 945
DpnII	GATC	4 cut(s)	303, 429, 877, 943
DraI	TTTAAA	1 cut(s)	736
Eam1104I	CTCTTC	3 cut(s)	23, 654, 1019
EarI	CTCTTC	3 cut(s)	23, 654, 1019
EciI	GGCGGA	2 cut(s)	23, 100
Eco57I	CTGAAG	2 cut(s)	678, 915
EcoNI	CCTNNNNNAGG	1 cut(s)	548
EcoRII	CCWGG	3 cut(s)	584, 710, 806
FaeI	CATG	3 cut(s)	221, 972, 1042
FaiI	YATR	9 cut(s)	195, 219, 462, 464, 531, 927, 970, 1040, 1075
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	217, 968, 1038
FauNDI	CATATG	1 cut(s)	462
FbaI	TGATCA	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	625
Fnu4HI	GCNGC	6 cut(s)	94, 114, 117, 174, 186, 966
FokI	GGATG	2 cut(s)	458, 527
Fsp4HI	GCNGC	6 cut(s)	94, 114, 117, 174, 186, 966
FspBI	CTAG	4 cut(s)	629, 771, 855, 860
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	6 cut(s)	94, 114, 117, 174, 186, 966
HaeIII	GGCC	3 cut(s)	62, 173, 539
HapII	CCGG	1 cut(s)	150
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	3 cut(s)	221, 972, 1042
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	626
HindII	GTYRAC	1 cut(s)	626
HindIII	AAGCTT	1 cut(s)	667
HinfI	GANTC	8 cut(s)	205, 254, 392, 518, 581, 653, 715, 728
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	1033
Hpy166II	GTNNAC	5 cut(s)	401, 626, 645, 974, 1064
Hpy188I	TCNGA	8 cut(s)	133, 169, 210, 259, 658, 756, 934, 948
Hpy188III	TCNNGA	3 cut(s)	142, 860, 881
Hpy8I	GTNNAC	5 cut(s)	401, 626, 645, 974, 1064
Hpy99I	CGWCG	2 cut(s)	71, 83
HpyAV	CCTTC	3 cut(s)	416, 544, 908
HpyCH4IV	ACGT	4 cut(s)	238, 416, 479, 937
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 971
HpyF3I	CTNAG	3 cut(s)	258, 288, 753
HpySE526I	ACGT	4 cut(s)	238, 416, 479, 937
Hsp92II	CATG	3 cut(s)	221, 972, 1042
HspAI	GCGC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	4 cut(s)	303, 429, 877, 943
LguI	GCTCTTC	1 cut(s)	1019
LmnI	GCTCC	1 cut(s)	799
Lsp1109I	GCAGC	3 cut(s)	105, 172, 977
LweI	GCATC	2 cut(s)	190, 445
MaeI	CTAG	4 cut(s)	629, 771, 855, 860
MaeII	ACGT	4 cut(s)	238, 416, 479, 937
MalI	GATC	4 cut(s)	305, 431, 879, 945
MboI	GATC	4 cut(s)	303, 429, 877, 943
MflI	RGATCY	2 cut(s)	877, 943
MhlI	GDGCHC	2 cut(s)	784, 976
MmeI	TCCRAC	3 cut(s)	273, 588, 771
MroXI	GAANNNNTTC	1 cut(s)	1028
MseI	TTAA	5 cut(s)	369, 684, 735, 873, 989
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	2 cut(s)	176, 838
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	3 cut(s)	586, 712, 808
Mva1269I	GAATGC	1 cut(s)	1006
MvaI	CCWGG	3 cut(s)	586, 712, 808
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	182, 971
NdeI	CATATG	1 cut(s)	462
NdeII	GATC	4 cut(s)	303, 429, 877, 943
NlaIII	CATG	3 cut(s)	221, 972, 1042
NlaIV	GGNNCC	1 cut(s)	229
NsbI	TGCGCA	1 cut(s)	189
NspI	RCATGY	1 cut(s)	972
PciSI	GCTCTTC	1 cut(s)	1019
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	1006
PdmI	GAANNNNTTC	1 cut(s)	1028
PfeI	GAWTC	8 cut(s)	205, 254, 392, 518, 581, 653, 715, 728
PflFI	GACNNNGTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	806
PkrI	GCNGC	6 cut(s)	95, 115, 118, 175, 187, 967
PshBI	ATTAAT	1 cut(s)	989
Psp1406I	AACGTT	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	584, 710, 806
PspGI	CCWGG	3 cut(s)	584, 710, 806
PspN4I	GGNNCC	1 cut(s)	229
PstI	CTGCAG	2 cut(s)	549, 1051
PsuI	RGATCY	2 cut(s)	877, 943
PsyI	GACNNNGTC	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	838
RsaI	GTAC	4 cut(s)	364, 427, 561, 822
RsaNI	GTAC	4 cut(s)	363, 426, 560, 821
RseI	CAYNNNNRTG	1 cut(s)	222
SalI	GTCGAC	1 cut(s)	624
SapI	GCTCTTC	1 cut(s)	1019
SaqAI	TTAA	5 cut(s)	369, 684, 735, 873, 989
SatI	GCNGC	6 cut(s)	94, 114, 117, 174, 186, 966
Sau3AI	GATC	4 cut(s)	303, 429, 877, 943
ScrFI	CCNGG	3 cut(s)	586, 712, 808
SduI	GDGCHC	2 cut(s)	784, 976
SfaNI	GCATC	2 cut(s)	190, 445
SfcI	CTRYAG	3 cut(s)	545, 692, 1047
SmiMI	CAYNNNNRTG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
SpeI	ACTAGT	1 cut(s)	628
SsiI	CCGC	6 cut(s)	8, 83, 111, 114, 117, 174
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	4 cut(s)	629, 771, 855, 860
StyD4I	CCNGG	3 cut(s)	584, 710, 806
TaiI	ACGT	4 cut(s)	241, 419, 482, 940
TaqI	TCGA	1 cut(s)	625
TatI	WGTACW	2 cut(s)	559, 820
TauI	GCSGC	3 cut(s)	116, 119, 176
TfiI	GAWTC	8 cut(s)	205, 254, 392, 518, 581, 653, 715, 728
Tru1I	TTAA	5 cut(s)	369, 684, 735, 873, 989
Tru9I	TTAA	5 cut(s)	369, 684, 735, 873, 989
TscAI	CASTG	1 cut(s)	981
TseI	GCWGC	3 cut(s)	93, 185, 965
TspDTI	ATGAA	5 cut(s)	93, 399, 462, 518, 720
TspGWI	ACGGA	1 cut(s)	583
TspRI	CASTG	1 cut(s)	981
Tth111I	GACNNNGTC	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	972
VspI	ATTAAT	1 cut(s)	989
XagI	CCTNNNNNAGG	1 cut(s)	548
XapI	RAATTY	1 cut(s)	847
XbaI	TCTAGA	1 cut(s)	859
XceI	RCATGY	1 cut(s)	972
XmiI	GTMKAC	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	1028
XspI	CTAG	4 cut(s)	629, 771, 855, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.