Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004360

Physical Location & Seq

Genomic Coordinates Reverse (-)

8082311 .. 8086055

Gene Structure 3745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG101300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGAGGCGGAGGACAAGAAGAAGAAGAAGAGGAACAAGAATAAGAAGAAGAACAACAAGGCCACCGACGATGTCCCCGTCGCGGAGAACAGCAGCCAAGTTTCATCGTCCGCCGCCGCCGCCGCCGATACTAGTTCCGAAGATGTCCAGATTTCCGGCAATGGTCAAGTTTCAGAGGCCGCTGATAATGCTGTGCAATATGTAGATGCGAATCCGATTAGGCATGAGAATGGCACCGAACAACGTTCGTTATTAGCTGAATCTGAGGAAAGGCATTGGCTTCAAAAAGAGGCTGAGTTGGAAGAAATGATCAAGCAATTAGAAAAAGAAAAAGACTTGCAAATGCACAAGGAGGTTACATTTGAGGGTACTATTAAGCAATTACAGAATGAAAAGGATTCAAGTGAACAGAATGTGGCTACGTTAGAAGGTACGATAAAACTATTACGGGATGAAAAAGATGCACATATGCAGAAAGAGGCTACGTTAGAAGATACAATAAAACTATTACGGGAGGAAACTGATTCACACATTCATAAAGAGGCCATCCTGCAGAAGGAAATTGTACAATTACGGAGTGAAACAGATTCCTGGCTTCAAAGGGAGGTTGGGTTGGAGGAGAAAATCAGTCGACTAGTAGCCGAAAAGTCCACTTTGGAATCTGAAGAGGCAAGCTTACAGGAAAAGATTAAACATCTACAGAGTGATAGAGATACCTGGATTCTAAAGGAGGATTCATTTAAAGAAATGATAGCAACTCAGACAGATAATATTGCTAGACTACGAGCACAGGTGTTGGAATTGGAGCAATCCAGGAATAATCTTGTACAAGAAAACCAACAGCTGATGGGAAATTTATCTAGTTTAGAGTTGCAAATTAAGGATCTTGAGAGTGTTTCTTCTAATCGCTCATCAGTTGAAGGTGCAAAGCATACTTCAGAACGTGAAGATCTGAACTCGCAAATTGAAGCAGCATGTGCACTGGTTGAGAAATTAATTACAGAGAATGCAGACCTTGTTGAAAAGGTGAAGAGCTTCCCCTCCATGATTTCTGCAGGAGTAATGTGTACTACTTCTGTCACTGGAGGCAAACATATCTTTCATGCAATTGTGTTGTATGCTGAGCCTTTGAGTGATCAGATTATAGCTGCTTCTATTAGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

388

Amino Acids

43.63

Weight (kDa)

4.99

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38580 AT2G38580 AT2G38580
fragaria_vesca	FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531
malus_domestica	MD12G1191100.v1.1
prunus_persica	Prupe.6G296200_v2.0.a1 Prupe.6G296200_v2.0.a1
pyrus_communis	pycom04g15590 pycom12g17830
rosa_chinensis	RchiOBHm_Chr3g0460131
rosa_laevigata	RLG00000025041
rosa_multiflora	Rmu_sc0000449.1_g000051 Rmu_sc0010911.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419810
rosa_rugosa	Rorug03G0040200 Rorug03G0040300 Rorug03G0040400
rosa_samantha	Rh3AG098200 Rh3BG101300 Rh3CG103400 Rh3DG102600 Rh5BG300100 Rh5DG309000 Rh7DG221400
rosa_wichuraiana	Rw3G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	631
AccII	CGCG	1 cut(s)	83
AciI	CCGC	8 cut(s)	8, 83, 111, 114, 117, 120, 123, 180
AclI	AACGTT	1 cut(s)	244
AclWI	GGATC	1 cut(s)	891
AcsI	RAATTY	1 cut(s)	853
AcuI	CTGAAG	2 cut(s)	684, 921
AfaI	GTAC	5 cut(s)	370, 433, 567, 828, 1069
AfiI	CCNNNNNNNGG	2 cut(s)	82, 556
AgsI	TTSAA	6 cut(s)	284, 402, 599, 920, 968, 1022
AhlI	ACTAGT	2 cut(s)	131, 634
AjnI	CCWGG	3 cut(s)	590, 716, 812
AluBI	AGCT	5 cut(s)	257, 675, 844, 1035, 1148
AluI	AGCT	5 cut(s)	257, 675, 844, 1035, 1148
Alw21I	GWGCWC	2 cut(s)	790, 982
Alw44I	GTGCAC	1 cut(s)	978
AlwI	GGATC	1 cut(s)	891
AoxI	GGCC	3 cut(s)	60, 177, 543
ApaLI	GTGCAC	1 cut(s)	978
ApeKI	GCWGC	3 cut(s)	93, 971, 1148
ApoI	RAATTY	1 cut(s)	853
AseI	ATTAAT	1 cut(s)	995
Asp700I	GAANNNNTTC	1 cut(s)	1034
AsuHPI	GGTGA	1 cut(s)	1039
BaeGI	GKGCMC	1 cut(s)	982
BanI	GGYRCC	1 cut(s)	233
Bbv12I	GWGCWC	2 cut(s)	790, 982
BbvI	GCAGC	3 cut(s)	105, 983, 1135
BccI	CCATC	2 cut(s)	554, 841
BciT130I	CCWGG	3 cut(s)	592, 718, 814
BclI	TGATCA	2 cut(s)	309, 1135
BcuI	ACTAGT	2 cut(s)	131, 634
BfaI	CTAG	4 cut(s)	132, 635, 777, 861
BfmI	CTRYAG	3 cut(s)	551, 698, 1053
BglII	AGATCT	1 cut(s)	949
BisI	GCNGC	8 cut(s)	94, 114, 117, 120, 123, 180, 972, 1149
BlpI	GCTNAGC	1 cut(s)	1122
BlsI	GCNGC	8 cut(s)	95, 115, 118, 121, 124, 181, 973, 1150
Bme1390I	CCNGG	3 cut(s)	592, 718, 814
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	3 cut(s)	592, 718, 814
BmsI	GCATC	2 cut(s)	196, 451
BpmI	CTGGAG	1 cut(s)	1104
Bpu1102I	GCTNAGC	1 cut(s)	1122
BpuEI	CTTGAG	1 cut(s)	908
BsaBI	GATNNNNATC	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 556
Bse1I	ACTGG	2 cut(s)	987, 1087
Bse3DI	GCAATG	1 cut(s)	166
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	3 cut(s)	592, 718, 814
BseGI	GGATG	2 cut(s)	457, 546
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	82, 556
BseMI	GCAATG	1 cut(s)	166
BseMII	CTCAG	4 cut(s)	255, 285, 773, 1113
BseNI	ACTGG	2 cut(s)	987, 1087
BseRI	GAGGAG	1 cut(s)	632
BseSI	GKGCMC	1 cut(s)	982
BseXI	GCAGC	3 cut(s)	105, 983, 1135
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	3 cut(s)	62, 179, 545
BshNI	GGYRCC	1 cut(s)	233
BsiHKAI	GWGCWC	2 cut(s)	790, 982
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	82, 556
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	1012
BsnI	GGCC	3 cut(s)	62, 179, 545
Bsp1286I	GDGCHC	2 cut(s)	790, 982
Bsp1407I	TGTACA	2 cut(s)	565, 826
Bsp143I	GATC	4 cut(s)	309, 883, 949, 1135
Bsp1720I	GCTNAGC	1 cut(s)	1122
BspACI	CCGC	8 cut(s)	8, 83, 111, 114, 117, 120, 123, 180
BspANI	GGCC	3 cut(s)	62, 179, 545
BspCNI	CTCAG	4 cut(s)	256, 286, 772, 1114
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	235
BspMAI	CTGCAG	2 cut(s)	555, 1057
BspPI	GGATC	1 cut(s)	891
BspQI	GCTCTTC	1 cut(s)	1025
BspT107I	GGYRCC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	166
BsrGI	TGTACA	2 cut(s)	565, 826
BsrI	ACTGG	2 cut(s)	987, 1087
BssMI	GATC	4 cut(s)	309, 883, 949, 1135
Bst2UI	CCWGG	3 cut(s)	592, 718, 814
Bst6I	CTCTTC	3 cut(s)	23, 660, 1025
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstAUI	TGTACA	2 cut(s)	565, 826
BstC8I	GCNNGC	1 cut(s)	673
BstDEI	CTNAG	4 cut(s)	264, 294, 759, 1122
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	457, 546
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	4 cut(s)	312, 886, 952, 1138
BstMBI	GATC	4 cut(s)	309, 883, 949, 1135
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 122, 188, 977
BstNI	CCWGG	3 cut(s)	592, 718, 814
BstNSI	RCATGY	1 cut(s)	978
BstSCI	CCNGG	3 cut(s)	590, 716, 812
BstSFI	CTRYAG	3 cut(s)	551, 698, 1053
BstSLI	GKGCMC	1 cut(s)	982
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	105, 983, 1135
BstX2I	RGATCY	2 cut(s)	883, 949
BstYI	RGATCY	2 cut(s)	883, 949
BsuRI	GGCC	3 cut(s)	62, 179, 545
BtsCI	GGATG	2 cut(s)	457, 546
BtsIMutI	CAGTG	2 cut(s)	980, 1080
Cac8I	GCNNGC	1 cut(s)	673
Csp6I	GTAC	5 cut(s)	369, 432, 566, 827, 1068
CviAII	CATG	4 cut(s)	224, 975, 1045, 1103
CviQI	GTAC	5 cut(s)	369, 432, 566, 827, 1068
DdeI	CTNAG	4 cut(s)	264, 294, 759, 1122
DpnI	GATC	4 cut(s)	311, 885, 951, 1137
DpnII	GATC	4 cut(s)	309, 883, 949, 1135
DraI	TTTAAA	1 cut(s)	742
Eam1104I	CTCTTC	3 cut(s)	23, 660, 1025
EarI	CTCTTC	3 cut(s)	23, 660, 1025
EciI	GGCGGA	2 cut(s)	23, 100
Eco57I	CTGAAG	2 cut(s)	684, 921
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoRII	CCWGG	3 cut(s)	590, 716, 812
FaeI	CATG	4 cut(s)	227, 978, 1048, 1106
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	4 cut(s)	223, 974, 1044, 1102
FauNDI	CATATG	1 cut(s)	468
FbaI	TGATCA	2 cut(s)	309, 1135
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	8 cut(s)	94, 114, 117, 120, 123, 180, 972, 1149
FokI	GGATG	2 cut(s)	464, 533
Fsp4HI	GCNGC	8 cut(s)	94, 114, 117, 120, 123, 180, 972, 1149
FspBI	CTAG	4 cut(s)	132, 635, 777, 861
GluI	GCNGC	8 cut(s)	94, 114, 117, 120, 123, 180, 972, 1149
GsuI	CTGGAG	1 cut(s)	1104
HaeIII	GGCC	3 cut(s)	62, 179, 545
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	4 cut(s)	227, 978, 1048, 1106
HincII	GTYRAC	1 cut(s)	632
HindII	GTYRAC	1 cut(s)	632
HindIII	AAGCTT	1 cut(s)	673
HinfI	GANTC	8 cut(s)	211, 260, 398, 524, 587, 659, 721, 734
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	1039
Hpy166II	GTNNAC	5 cut(s)	407, 632, 651, 980, 1068
Hpy188I	TCNGA	9 cut(s)	139, 175, 216, 265, 664, 762, 940, 954, 1140
Hpy188III	TCNNGA	2 cut(s)	148, 887
Hpy8I	GTNNAC	5 cut(s)	407, 632, 651, 980, 1068
Hpy99I	CGWCG	2 cut(s)	71, 83
HpyAV	CCTTC	3 cut(s)	422, 550, 914
HpyCH4IV	ACGT	4 cut(s)	244, 422, 485, 943
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 122, 188, 977
HpyF3I	CTNAG	4 cut(s)	264, 294, 759, 1122
HpySE526I	ACGT	4 cut(s)	244, 422, 485, 943
Hsp92II	CATG	4 cut(s)	227, 978, 1048, 1106
Ksp22I	TGATCA	2 cut(s)	309, 1135
Kzo9I	GATC	4 cut(s)	309, 883, 949, 1135
LguI	GCTCTTC	1 cut(s)	1025
LmnI	GCTCC	1 cut(s)	805
Lsp1109I	GCAGC	3 cut(s)	105, 983, 1135
LweI	GCATC	2 cut(s)	196, 451
MaeI	CTAG	4 cut(s)	132, 635, 777, 861
MaeII	ACGT	4 cut(s)	244, 422, 485, 943
MaeIII	GTNAC	2 cut(s)	355, 1078
MalI	GATC	4 cut(s)	311, 885, 951, 1137
MboI	GATC	4 cut(s)	309, 883, 949, 1135
MfeI	CAATTG	1 cut(s)	1107
MflI	RGATCY	2 cut(s)	883, 949
MhlI	GDGCHC	2 cut(s)	790, 982
MmeI	TCCRAC	3 cut(s)	279, 594, 777
MroXI	GAANNNNTTC	1 cut(s)	1034
MseI	TTAA	5 cut(s)	375, 690, 741, 879, 995
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	2 cut(s)	182, 844
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	3 cut(s)	592, 718, 814
MunI	CAATTG	1 cut(s)	1107
Mva1269I	GAATGC	1 cut(s)	1012
MvaI	CCWGG	3 cut(s)	592, 718, 814
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	4 cut(s)	119, 122, 188, 977
NdeI	CATATG	1 cut(s)	468
NdeII	GATC	4 cut(s)	309, 883, 949, 1135
NlaIII	CATG	4 cut(s)	227, 978, 1048, 1106
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	1078
NspI	RCATGY	1 cut(s)	978
PciSI	GCTCTTC	1 cut(s)	1025
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	1012
PdmI	GAANNNNTTC	1 cut(s)	1034
PfeI	GAWTC	8 cut(s)	211, 260, 398, 524, 587, 659, 721, 734
PflFI	GACNNNGTC	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	812
PkrI	GCNGC	8 cut(s)	95, 115, 118, 121, 124, 181, 973, 1150
PshBI	ATTAAT	1 cut(s)	995
Psp1406I	AACGTT	1 cut(s)	244
Psp6I	CCWGG	3 cut(s)	590, 716, 812
PspGI	CCWGG	3 cut(s)	590, 716, 812
PspN4I	GGNNCC	1 cut(s)	235
PstI	CTGCAG	2 cut(s)	555, 1057
PsuI	RGATCY	2 cut(s)	883, 949
PsyI	GACNNNGTC	1 cut(s)	71
PvuII	CAGCTG	1 cut(s)	844
RsaI	GTAC	5 cut(s)	370, 433, 567, 828, 1069
RsaNI	GTAC	5 cut(s)	369, 432, 566, 827, 1068
RseI	CAYNNNNRTG	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	630
SapI	GCTCTTC	1 cut(s)	1025
SaqAI	TTAA	5 cut(s)	375, 690, 741, 879, 995
SatI	GCNGC	8 cut(s)	94, 114, 117, 120, 123, 180, 972, 1149
Sau3AI	GATC	4 cut(s)	309, 883, 949, 1135
ScrFI	CCNGG	3 cut(s)	592, 718, 814
SduI	GDGCHC	2 cut(s)	790, 982
SfaNI	GCATC	2 cut(s)	196, 451
SfcI	CTRYAG	3 cut(s)	551, 698, 1053
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
SpeI	ACTAGT	2 cut(s)	131, 634
SsiI	CCGC	8 cut(s)	8, 83, 111, 114, 117, 120, 123, 180
SspI	AATATT	1 cut(s)	772
SspMI	CTAG	4 cut(s)	132, 635, 777, 861
StyD4I	CCNGG	3 cut(s)	590, 716, 812
TaiI	ACGT	4 cut(s)	247, 425, 488, 946
TaqI	TCGA	1 cut(s)	631
TatI	WGTACW	3 cut(s)	565, 826, 1067
TauI	GCSGC	5 cut(s)	116, 119, 122, 125, 182
TfiI	GAWTC	8 cut(s)	211, 260, 398, 524, 587, 659, 721, 734
Tru1I	TTAA	5 cut(s)	375, 690, 741, 879, 995
Tru9I	TTAA	5 cut(s)	375, 690, 741, 879, 995
TscAI	CASTG	2 cut(s)	987, 1087
TseFI	GTSAC	1 cut(s)	1078
TseI	GCWGC	3 cut(s)	93, 971, 1148
Tsp45I	GTSAC	1 cut(s)	1078
TspDTI	ATGAA	6 cut(s)	93, 405, 468, 524, 726, 1091
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	2 cut(s)	987, 1087
Tth111I	GACNNNGTC	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	978
VspI	ATTAAT	1 cut(s)	995
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	853
XceI	RCATGY	1 cut(s)	978
XmiI	GTMKAC	1 cut(s)	631
XmnI	GAANNNNTTC	1 cut(s)	1034
XspI	CTAG	4 cut(s)	132, 635, 777, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.