Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004360

Physical Location & Seq

Genomic Coordinates Forward (+)

27354251 .. 27357672

Gene Structure 3422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1191100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAGAGCAATGGCACGGAATCTATTATTAGCTGAATCTGAGAAAAAATGGCTCCAAAGAGAGGCTACATTAGAAGAAACAATCAAACAATTACAAATCGAAAGGGACATATATATACGGAAGGAGGCTACATTAAAGGATACTGTTAAACAATTACGGAATGAGAATGCTTCGCGTATACAGAAAGAGGCAACATTACATGATACAATTAAGCAAATGCGGGATGAAACGGATTCACATACACAGAAAGAGGCTGGTCTACAGATGGAAAATGAACATTTACAGAGCGAAAAAGTTTTGTGGCTTCAGAAAGAGGTTGGATTAGAGGACAAAATTGGTCGGTTAGTAGATGAAAAAGGCACTTTGCATTTGGAAAAGACAAGCTTACAGGAAAAGTTTAAACATCTAGAGGGAGATAGAGAGACCTGGACTCTAAAGGAGGATTCGTTTAAAGGAACGTTAGCAACTCTGAATGACGATATTGCTAGATTACGAGCACAGGTGTCGGAATTGGAACAATCCAGGAATAATCTTGTACAAGAAAATCAACAGCTGATGGAAAACATTTCTAGTTTGCAGTTGCAAATTAAGAATCTTGAGAGTGTCTACTCTACTCCAGCATCAGACAAACTTGCAAAGGCTTCGGAACATGAGGAATTGAACTCTCAGGTTGAAGCAGCATGTTCACTAGTTGAGAAATTAGTTGCAGAGAATGCAGAGCTTGTTGAGAAGGTGAATGAGTTGTATGGTGAACTTGACCGACGGAGCCTCACAGTTGAACTTGCTTCAACAACAGAATCTAATACACCAGTTGTACCTCCTGAAACTGCCAGTGTCATTGATCCCGTGTCCCTATCCACTGAGGATATGTCGACGTCAGATGAGAAGCTTGATTCCCCCAAAGTTGTTCCAATCAAACAGGAGATGCATAGTAATGGTAACATGGATTCTGAACATGATGCTTTAGTTCCAGAACTGCCAGTATCCGATGAAGTTAGTGAAATTGTTCAAATTCCGTTGGATGAGAATGAAGTCAGAAATCTAGAGGTGTCTCTCGAGAATGACAAAAATGCCGGTGTGCCACTCGTAGAAGCTCCCTTGATTGGTGCTCCTTTCCGGTTAATGTCATATGTTGCTAGATATGTTAGCAGTGCTGACTTAGTTAACAAGGGATCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

394

Amino Acids

44.27

Weight (kDa)

4.74

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38580 AT2G38580 AT2G38580
fragaria_vesca	FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531
malus_domestica	MD12G1191100.v1.1
prunus_persica	Prupe.6G296200_v2.0.a1 Prupe.6G296200_v2.0.a1
pyrus_communis	pycom04g15590 pycom12g17830
rosa_chinensis	RchiOBHm_Chr3g0460131
rosa_laevigata	RLG00000025041
rosa_multiflora	Rmu_sc0000449.1_g000051 Rmu_sc0010911.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419810
rosa_rugosa	Rorug03G0040200 Rorug03G0040300 Rorug03G0040400
rosa_samantha	Rh3AG098200 Rh3BG101300 Rh3CG103400 Rh3DG102600 Rh5BG300100 Rh5DG309000 Rh7DG221400
rosa_wichuraiana	Rw3G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	878
AccI	GTMKAC	4 cut(s)	178, 259, 606, 872
AccII	CGCG	1 cut(s)	175
AciI	CCGC	1 cut(s)	220
AclI	AACGTT	1 cut(s)	458
AclWI	GGATC	2 cut(s)	836, 1180
AcsI	RAATTY	1 cut(s)	1011
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	875
AfaI	GTAC	2 cut(s)	537, 816
AfiI	CCNNNNNNNGG	2 cut(s)	61, 1103
AgsI	TTSAA	5 cut(s)	661, 674, 779, 789, 1010
AhlI	ACTAGT	1 cut(s)	688
AjnI	CCWGG	2 cut(s)	425, 521
AluBI	AGCT	6 cut(s)	32, 384, 553, 721, 889, 1094
AluI	AGCT	6 cut(s)	32, 384, 553, 721, 889, 1094
Alw21I	GWGCWC	2 cut(s)	499, 1111
Alw26I	GTCTC	2 cut(s)	416, 1056
AlwI	GGATC	2 cut(s)	836, 1180
Ama87I	CYCGRG	1 cut(s)	1055
ApeKI	GCWGC	1 cut(s)	677
ApoI	RAATTY	1 cut(s)	1011
Asp700I	GAANNNNTTC	1 cut(s)	1005
AsuHPI	GGTGA	2 cut(s)	745, 761
AvaI	CYCGRG	1 cut(s)	1055
Bbv12I	GWGCWC	2 cut(s)	499, 1111
BbvI	GCAGC	1 cut(s)	689
BccI	CCATC	2 cut(s)	259, 550
BcgI	CGANNNNNNTGC	4 cut(s)	486, 520, 624, 658
BciT130I	CCWGG	2 cut(s)	427, 523
BciVI	GTATCC	2 cut(s)	133, 994
BcoDI	GTCTC	2 cut(s)	416, 1056
BcuI	ACTAGT	1 cut(s)	688
BfaI	CTAG	6 cut(s)	407, 486, 570, 689, 1043, 1137
BfmI	CTRYAG	1 cut(s)	260
BfuI	GTATCC	2 cut(s)	133, 994
BisI	GCNGC	1 cut(s)	678
BlsI	GCNGC	1 cut(s)	679
Bme1390I	CCNGG	2 cut(s)	427, 523
BmeT110I	CYCGRG	1 cut(s)	1055
BmiI	GGNNCC	2 cut(s)	53, 767
BmrFI	CCNGG	2 cut(s)	427, 523
BmsI	GCATC	3 cut(s)	629, 915, 949
BpmI	CTGGAG	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	617
BsaHI	GRCGYC	1 cut(s)	875
BsaI	GGTCTC	1 cut(s)	416
BsaWI	WCCGGW	1 cut(s)	1116
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 1103
Bse118I	RCCGGY	1 cut(s)	1073
Bse1I	ACTGG	3 cut(s)	809, 831, 980
Bse3DI	GCAATG	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	427, 523
BseGI	GGATG	2 cut(s)	229, 1027
BseLI	CCNNNNNNNGG	2 cut(s)	61, 1103
BseMI	GCAATG	1 cut(s)	15
BseMII	CTCAG	3 cut(s)	30, 680, 852
BseNI	ACTGG	3 cut(s)	809, 831, 980
BseXI	GCAGC	1 cut(s)	689
Bsh1236I	CGCG	1 cut(s)	175
BsiHKAI	GWGCWC	2 cut(s)	499, 1111
BsiHKCI	CYCGRG	1 cut(s)	1055
BsiSI	CCGG	2 cut(s)	1074, 1117
BslFI	GGGAC	2 cut(s)	119, 835
BslI	CCNNNNNNNGG	2 cut(s)	61, 1103
BsmAI	GTCTC	2 cut(s)	416, 1056
BsmFI	GGGAC	2 cut(s)	119, 835
BsmI	GAATGC	2 cut(s)	172, 718
Bso31I	GGTCTC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	1055
Bsp1286I	GDGCHC	2 cut(s)	499, 1111
Bsp1407I	TGTACA	1 cut(s)	535
Bsp143I	GATC	2 cut(s)	841, 1172
BspACI	CCGC	1 cut(s)	220
BspCNI	CTCAG	3 cut(s)	31, 679, 853
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	53, 767
BspPI	GGATC	2 cut(s)	836, 1180
BspTNI	GGTCTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	1073
BsrGI	TGTACA	1 cut(s)	535
BsrI	ACTGG	3 cut(s)	809, 831, 980
BssAI	RCCGGY	1 cut(s)	1073
BssMI	GATC	2 cut(s)	841, 1172
BssNAI	GTATAC	1 cut(s)	179
BssNI	GRCGYC	1 cut(s)	875
Bst1107I	GTATAC	1 cut(s)	179
Bst2UI	CCWGG	2 cut(s)	427, 523
Bst4CI	ACNGT	2 cut(s)	145, 775
BstACI	GRCGYC	1 cut(s)	875
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstAUI	TGTACA	1 cut(s)	535
BstDEI	CTNAG	4 cut(s)	39, 666, 861, 1159
BstF5I	GGATG	2 cut(s)	229, 1027
BstFNI	CGCG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	844, 1175
BstMAI	GTCTC	2 cut(s)	416, 1056
BstMBI	GATC	2 cut(s)	841, 1172
BstMWI	GCNNNNNNNGC	1 cut(s)	713
BstNI	CCWGG	2 cut(s)	427, 523
BstNSI	RCATGY	1 cut(s)	684
BstSCI	CCNGG	2 cut(s)	425, 521
BstSFI	CTRYAG	1 cut(s)	260
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	1172
BstYI	RGATCY	1 cut(s)	1172
BstZ17I	GTATAC	1 cut(s)	179
BsuI	GTATCC	2 cut(s)	133, 994
BtsCI	GGATG	2 cut(s)	229, 1027
BtsI	GCAGTG	1 cut(s)	1156
BtsIMutI	CAGTG	3 cut(s)	838, 858, 1156
Cfr10I	RCCGGY	1 cut(s)	1073
Csp6I	GTAC	2 cut(s)	536, 815
CviAII	CATG	5 cut(s)	200, 650, 681, 943, 956
CviQI	GTAC	2 cut(s)	536, 815
DdeI	CTNAG	4 cut(s)	39, 666, 861, 1159
DpnI	GATC	2 cut(s)	843, 1174
DpnII	GATC	2 cut(s)	841, 1172
DraI	TTTAAA	2 cut(s)	400, 451
Eco31I	GGTCTC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	1055
EcoRII	CCWGG	2 cut(s)	425, 521
EcoT22I	ATGCAT	1 cut(s)	930
FaeI	CATG	5 cut(s)	203, 653, 684, 946, 959
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	2 cut(s)	119, 835
FatI	CATG	5 cut(s)	199, 649, 680, 942, 955
FauI	CCCGC	1 cut(s)	213
FauNDI	CATATG	1 cut(s)	1129
FblI	GTMKAC	4 cut(s)	178, 259, 606, 872
Fnu4HI	GCNGC	1 cut(s)	678
FokI	GGATG	2 cut(s)	236, 1034
Fsp4HI	GCNGC	1 cut(s)	678
FspBI	CTAG	6 cut(s)	407, 486, 570, 689, 1043, 1137
GluI	GCNGC	1 cut(s)	678
GsuI	CTGGAG	1 cut(s)	600
HapII	CCGG	2 cut(s)	1074, 1117
Hin1I	GRCGYC	1 cut(s)	875
Hin1II	CATG	5 cut(s)	203, 653, 684, 946, 959
HincII	GTYRAC	2 cut(s)	873, 1165
HindII	GTYRAC	2 cut(s)	873, 1165
HindIII	AAGCTT	2 cut(s)	382, 887
HinfI	GANTC	9 cut(s)	19, 35, 233, 430, 443, 592, 797, 893, 947
HpaI	GTTAAC	1 cut(s)	1165
HpaII	CCGG	2 cut(s)	1074, 1117
HphI	GGTGA	2 cut(s)	745, 761
Hpy166II	GTNNAC	7 cut(s)	179, 260, 607, 686, 752, 873, 1165
Hpy188III	TCNNGA	7 cut(s)	407, 596, 821, 971, 1043, 1055, 1057
Hpy8I	GTNNAC	7 cut(s)	179, 260, 607, 686, 752, 873, 1165
Hpy99I	CGWCG	2 cut(s)	765, 877
HpyAV	CCTTC	2 cut(s)	115, 724
HpyCH4III	ACNGT	2 cut(s)	145, 775
HpyCH4IV	ACGT	2 cut(s)	458, 875
HpyCH4V	TGCA	7 cut(s)	367, 577, 583, 635, 707, 716, 928
HpyF10VI	GCNNNNNNNGC	1 cut(s)	713
HpyF3I	CTNAG	4 cut(s)	39, 666, 861, 1159
HpySE526I	ACGT	2 cut(s)	458, 875
Hsp92I	GRCGYC	1 cut(s)	875
Hsp92II	CATG	5 cut(s)	203, 653, 684, 946, 959
KspAI	GTTAAC	1 cut(s)	1165
Kzo9I	GATC	2 cut(s)	841, 1172
LmnI	GCTCC	4 cut(s)	57, 765, 1099, 1114
Lsp1109I	GCAGC	1 cut(s)	689
LweI	GCATC	3 cut(s)	629, 915, 949
MaeI	CTAG	6 cut(s)	407, 486, 570, 689, 1043, 1137
MaeII	ACGT	2 cut(s)	458, 875
MaeIII	GTNAC	1 cut(s)	938
MalI	GATC	2 cut(s)	843, 1174
MboI	GATC	2 cut(s)	841, 1172
MboII	GAAGA	1 cut(s)	86
MflI	RGATCY	1 cut(s)	1172
MhlI	GDGCHC	2 cut(s)	499, 1111
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	3 cut(s)	298, 486, 999
Mph1103I	ATGCAT	1 cut(s)	930
MroXI	GAANNNNTTC	1 cut(s)	1005
MseI	TTAA	9 cut(s)	134, 147, 210, 399, 450, 588, 1121, 1164, 1180
MslI	CAYNNNNRTG	1 cut(s)	933
MspA1I	CMGCKG	1 cut(s)	553
MspI	CCGG	2 cut(s)	1074, 1117
MspR9I	CCNGG	2 cut(s)	427, 523
MssI	GTTTAAAC	1 cut(s)	400
Mva1269I	GAATGC	2 cut(s)	172, 718
MvaI	CCWGG	2 cut(s)	427, 523
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	713
NdeI	CATATG	1 cut(s)	1129
NdeII	GATC	2 cut(s)	841, 1172
NlaIII	CATG	5 cut(s)	203, 653, 684, 946, 959
NlaIV	GGNNCC	2 cut(s)	53, 767
NsiI	ATGCAT	1 cut(s)	930
NspI	RCATGY	1 cut(s)	684
PaeR7I	CTCGAG	1 cut(s)	1055
PctI	GAATGC	2 cut(s)	172, 718
PdmI	GAANNNNTTC	1 cut(s)	1005
PfeI	GAWTC	8 cut(s)	19, 35, 233, 443, 592, 797, 893, 947
PfoI	TCCNGGA	1 cut(s)	521
PkrI	GCNGC	1 cut(s)	679
PleI	GAGTC	1 cut(s)	424
PmeI	GTTTAAAC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	424
Psp1406I	AACGTT	1 cut(s)	458
Psp6I	CCWGG	2 cut(s)	425, 521
PspGI	CCWGG	2 cut(s)	425, 521
PspN4I	GGNNCC	2 cut(s)	53, 767
PsuI	RGATCY	1 cut(s)	1172
PvuII	CAGCTG	1 cut(s)	553
RsaI	GTAC	2 cut(s)	537, 816
RsaNI	GTAC	2 cut(s)	536, 815
RseI	CAYNNNNRTG	1 cut(s)	933
SalI	GTCGAC	1 cut(s)	871
SaqAI	TTAA	9 cut(s)	134, 147, 210, 399, 450, 588, 1121, 1164, 1180
SatI	GCNGC	1 cut(s)	678
Sau3AI	GATC	2 cut(s)	841, 1172
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	2 cut(s)	427, 523
SduI	GDGCHC	2 cut(s)	499, 1111
SfaNI	GCATC	3 cut(s)	629, 915, 949
SfcI	CTRYAG	1 cut(s)	260
Sfr274I	CTCGAG	1 cut(s)	1055
SlaI	CTCGAG	1 cut(s)	1055
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	2 cut(s)	596, 1055
SmoI	CTYRAG	2 cut(s)	596, 1055
SpeI	ACTAGT	1 cut(s)	688
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	6 cut(s)	407, 486, 570, 689, 1043, 1137
StyD4I	CCNGG	2 cut(s)	425, 521
TaaI	ACNGT	2 cut(s)	145, 775
TaiI	ACGT	2 cut(s)	461, 878
TaqI	TCGA	3 cut(s)	99, 872, 1056
TaqII	GACCGA	1 cut(s)	774
TatI	WGTACW	1 cut(s)	535
TfiI	GAWTC	8 cut(s)	19, 35, 233, 443, 592, 797, 893, 947
Tru1I	TTAA	9 cut(s)	134, 147, 210, 399, 450, 588, 1121, 1164, 1180
Tru9I	TTAA	9 cut(s)	134, 147, 210, 399, 450, 588, 1121, 1164, 1180
TscAI	CASTG	3 cut(s)	838, 865, 1156
TseI	GCWGC	1 cut(s)	677
TspDTI	ATGAA	5 cut(s)	240, 288, 366, 1005, 1044
TspGWI	ACGGA	6 cut(s)	31, 133, 172, 245, 778, 1005
TspRI	CASTG	3 cut(s)	838, 865, 1156
XapI	RAATTY	1 cut(s)	1011
XbaI	TCTAGA	2 cut(s)	406, 1042
XceI	RCATGY	1 cut(s)	684
XhoI	CTCGAG	1 cut(s)	1055
XmiI	GTMKAC	4 cut(s)	178, 259, 606, 872
XmnI	GAANNNNTTC	1 cut(s)	1005
XspI	CTAG	6 cut(s)	407, 486, 570, 689, 1043, 1137
ZraI	GACGTC	1 cut(s)	876
Zsp2I	ATGCAT	1 cut(s)	930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.