Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004360

Physical Location & Seq

Genomic Coordinates Forward (+)

27083464 .. 27087535

Gene Structure 4072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G296200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGAGGACGATAAGAAGAAGAAAAAGAAGAACAAGAAGAAGAAGAACAAGCAGGTTGAGACCACCGACAACGTTCCGGTTTCCGGTAATGACCAAGTTTCGAAGGACGCCGCAGACGACGGTCGTTTAGACGATGTCCCGGTTACGGGTAACGGCCAAGTTCCAGAGGCCGTCGCCGATGTTTGTTCAGATGCTATGCAAGACGAAGATGCGAATGGGAATAGGCATGAGAGCAATGGCACGGAATGTTCGTTAGCTGAATCTGAGAAACAACATTGGCTCCAAAGAGAGGCTACCTTAGAAGAAACAATCAAACAATTACAAAAGGAGACGGACTTGCACATACAGAAAGAGGCTACCTTAGAGGATGCTATTAAACAGTTACGAAATGAAAATGATTCACATATACAGAAAGAGGCTACCTTAGAAGATTTCATAAAACAATTGCGGCATGAAAATGATTCACATATACAGAAAGAGGCCGACCAACAGAAGGAAATTGTACAATTACAGAGTGAAAAAGATTCTTGGCTTCAAAAAGAGGTTGGATTAGAGGAGAAAATTGGTCGATTAGTAGATGAAAAGGCTACTTTGGATTCAAAAGAGTCAAGCTTACAGGAAAAGATTAAACATCTAGAGAGAGATAGAGATACCTGGATTCTAAAGGAGGATTCGTTTAAAGAAATGGTAGCAATTCTGAATGATGATGTTGCTAAGTTACGAGCACAGGTGTTGGAATTGGAGCAATCCAGGGATAATGTTGTCCAAGTAAATCAACAGCTGATGGAAAACTCCTCTAGTCTGCAGTTGCAAATTAAGAATCTTGAGAGTGTCTCCTCTACTCCCTCATCAGACGAACTTCCAAAGCATGCTTTGGAACGTGAGGATTTGAACTCTCAGGTTGAAGCAGCATGTGCACTGGTTGAGAAACTAATGGCAGAAAATGCAGAGCTTGTTGAAAAGGTGAATGAGTTGCATCTTGAACTTGACCGGCGGAGTGCAACAGTTGAGCTCACTTCAACAAAAACATCTAATATAACAATTGCCCCTCCTGAAACTGCCAGTGTCATCGATCCCATGTCCAGATCCAATGAGGATATGTCTACATCAGACCAGAAGCTTGATTCCCCAGAAGTTGCTGCAATCAAACAGGAGATGCATAGTAATGGTAGCGAGGATTCTCAGCATGTTGCTTTTGTTCCAGAATTGCCAATATATGATGAAATTAGTGAAATAGTGCAAATTCCGTTGGAGGAGAATGAAGTCCGGAATCTAGAGTTGTCAGTTGAGACTGATAAAAATGCTGCTGTGCCGCTTATAGATGCTCCCCTTATTGGTGCGCCTTTCCGGTTAATGTCATTTGTCGCTAGATATGTGAGCGGTGCTGATTTGGTTAACCAAGCTCCTACCAACTCTAGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

475

Amino Acids

53.2

Weight (kDa)

4.65

Isoelectric Point (pI)

55.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38580 AT2G38580 AT2G38580
fragaria_vesca	FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531
malus_domestica	MD12G1191100.v1.1
prunus_persica	Prupe.6G296200_v2.0.a1 Prupe.6G296200_v2.0.a1
pyrus_communis	pycom04g15590 pycom12g17830
rosa_chinensis	RchiOBHm_Chr3g0460131
rosa_laevigata	RLG00000025041
rosa_multiflora	Rmu_sc0000449.1_g000051 Rmu_sc0010911.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419810
rosa_rugosa	Rorug03G0040200 Rorug03G0040300 Rorug03G0040400
rosa_samantha	Rh3AG098200 Rh3BG101300 Rh3CG103400 Rh3DG102600 Rh5BG300100 Rh5DG309000 Rh7DG221400
rosa_wichuraiana	Rw3G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	43
AccBSI	CCGCTC	1 cut(s)	1380
AccI	GTMKAC	1 cut(s)	1103
AccIII	TCCGGA	1 cut(s)	1266
AciI	CCGC	5 cut(s)	111, 448, 994, 1313, 1380
AclI	AACGTT	1 cut(s)	72
AclWI	GGATC	2 cut(s)	1067, 1080
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	1242
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	6 cut(s)	83, 145, 146, 289, 493, 1334
AgsI	TTSAA	7 cut(s)	536, 600, 892, 905, 959, 983, 1020
AjnI	CCWGG	2 cut(s)	653, 749
AluBI	AGCT	7 cut(s)	257, 612, 781, 952, 1012, 1120, 1403
AluI	AGCT	7 cut(s)	257, 612, 781, 952, 1012, 1120, 1403
Alw21I	GWGCWC	3 cut(s)	727, 919, 1014
Alw26I	GTCTC	4 cut(s)	53, 323, 838, 1283
Alw44I	GTGCAC	1 cut(s)	915
AlwI	GGATC	2 cut(s)	1067, 1080
Aor13HI	TCCGGA	1 cut(s)	1266
AoxI	GGCC	3 cut(s)	154, 168, 480
ApaLI	GTGCAC	1 cut(s)	915
ApeKI	GCWGC	3 cut(s)	908, 1139, 1304
ApoI	RAATTY	1 cut(s)	1242
AspLEI	GCGC	1 cut(s)	1342
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	976
AsuII	TTCGAA	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	919
BanII	GRGCYC	1 cut(s)	1014
Bbv12I	GWGCWC	3 cut(s)	727, 919, 1014
BbvI	GCAGC	3 cut(s)	920, 1126, 1291
BccI	CCATC	1 cut(s)	778
BceAI	ACGGC	2 cut(s)	155, 169
BciT130I	CCWGG	2 cut(s)	655, 751
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	4 cut(s)	53, 323, 838, 1283
BfaI	CTAG	5 cut(s)	635, 798, 1274, 1368, 1416
BfmI	CTRYAG	1 cut(s)	803
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	6 cut(s)	111, 449, 909, 1140, 1305, 1313
BlsI	GCNGC	6 cut(s)	112, 450, 910, 1141, 1306, 1314
Bme1390I	CCNGG	3 cut(s)	140, 655, 751
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	3 cut(s)	140, 655, 751
BmsI	GCATC	6 cut(s)	181, 199, 358, 985, 1146, 1312
BoxI	GACNNNNGTC	1 cut(s)	120
BplI	GAGNNNNNCTC	2 cut(s)	818, 850
Bpu14I	TTCGAA	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	845
BpuMI	CCSGG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	1071
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	750
BsaWI	WCCGGW	4 cut(s)	76, 83, 1266, 1347
BsaXI	ACNNNNNCTCC	4 cut(s)	264, 294, 659, 689
Bsc4I	CCNNNNNNNGG	6 cut(s)	83, 145, 146, 289, 493, 1334
Bse118I	RCCGGY	1 cut(s)	990
Bse1I	ACTGG	2 cut(s)	924, 1062
Bse3DI	GCAATG	1 cut(s)	241
BseAI	TCCGGA	1 cut(s)	1266
BseBI	CCWGG	2 cut(s)	655, 751
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	1 cut(s)	750
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	6 cut(s)	83, 145, 146, 289, 493, 1334
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	3 cut(s)	255, 911, 1196
BseNI	ACTGG	2 cut(s)	924, 1062
BseRI	GAGGAG	4 cut(s)	569, 784, 826, 1268
BseSI	GKGCMC	1 cut(s)	919
BseXI	GCAGC	3 cut(s)	920, 1126, 1291
Bsh1285I	CGRYCG	1 cut(s)	124
BshFI	GGCC	3 cut(s)	156, 170, 482
BshVI	ATCGAT	1 cut(s)	1071
BsiEI	CGRYCG	1 cut(s)	124
BsiHKAI	GWGCWC	3 cut(s)	727, 919, 1014
BsiSI	CCGG	6 cut(s)	77, 84, 140, 991, 1267, 1348
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	6 cut(s)	83, 145, 146, 289, 493, 1334
BsmAI	GTCTC	4 cut(s)	53, 323, 838, 1283
BsmBI	CGTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	3 cut(s)	156, 170, 482
Bso31I	GGTCTC	1 cut(s)	53
Bsp119I	TTCGAA	1 cut(s)	101
Bsp1286I	GDGCHC	3 cut(s)	727, 919, 1014
Bsp13I	TCCGGA	1 cut(s)	1266
Bsp1407I	TGTACA	1 cut(s)	502
Bsp143I	GATC	2 cut(s)	1072, 1085
BspACI	CCGC	5 cut(s)	111, 448, 994, 1313, 1380
BspANI	GGCC	3 cut(s)	156, 170, 482
BspCNI	CTCAG	3 cut(s)	256, 910, 1195
BspDI	ATCGAT	1 cut(s)	1071
BspEI	TCCGGA	1 cut(s)	1266
BspLI	GGNNCC	1 cut(s)	281
BspMAI	CTGCAG	1 cut(s)	807
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	1067, 1080
BspT104I	TTCGAA	1 cut(s)	101
BspTNI	GGTCTC	1 cut(s)	53
BsrBI	CCGCTC	1 cut(s)	1380
BsrDI	GCAATG	1 cut(s)	241
BsrFI	RCCGGY	1 cut(s)	990
BsrGI	TGTACA	1 cut(s)	502
BsrI	ACTGG	2 cut(s)	924, 1062
BssAI	RCCGGY	1 cut(s)	990
BssECI	CCNNGG	1 cut(s)	750
BssMI	GATC	2 cut(s)	1072, 1085
BssNI	GRCGYC	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	655, 751
Bst4CI	ACNGT	3 cut(s)	122, 381, 1006
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	2 cut(s)	914, 944
BstAUI	TGTACA	1 cut(s)	502
BstBI	TTCGAA	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	870
BstDEI	CTNAG	7 cut(s)	264, 298, 361, 424, 714, 897, 1182
BstF5I	GGATG	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	1342
BstKTI	GATC	2 cut(s)	1075, 1088
BstMAI	GTCTC	4 cut(s)	53, 323, 838, 1283
BstMBI	GATC	2 cut(s)	1072, 1085
BstMCI	CGRYCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	914, 944
BstNI	CCWGG	2 cut(s)	655, 751
BstNSI	RCATGY	3 cut(s)	872, 915, 1190
BstPAI	GACNNNNGTC	1 cut(s)	120
BstSCI	CCNGG	3 cut(s)	138, 653, 749
BstSFI	CTRYAG	1 cut(s)	803
BstSLI	GKGCMC	1 cut(s)	919
BstV1I	GCAGC	3 cut(s)	920, 1126, 1291
BstX2I	RGATCY	1 cut(s)	1085
BstYI	RGATCY	1 cut(s)	1085
Bsu15I	ATCGAT	1 cut(s)	1071
BsuRI	GGCC	3 cut(s)	156, 170, 482
BsuTUI	ATCGAT	1 cut(s)	1071
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	917, 1069
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	870
CfoI	GCGC	1 cut(s)	1342
Cfr10I	RCCGGY	1 cut(s)	990
ClaI	ATCGAT	1 cut(s)	1071
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	6 cut(s)	227, 452, 869, 912, 1078, 1187
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	7 cut(s)	264, 298, 361, 424, 714, 897, 1182
DpnI	GATC	2 cut(s)	1074, 1087
DpnII	GATC	2 cut(s)	1072, 1085
DraI	TTTAAA	1 cut(s)	679
EaeI	YGGCCR	1 cut(s)	154
EciI	GGCGGA	1 cut(s)	1009
Ecl136II	GAGCTC	1 cut(s)	1012
Eco24I	GRGCYC	1 cut(s)	1014
Eco31I	GGTCTC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	1012
EcoICRI	GAGCTC	1 cut(s)	1012
EcoRII	CCWGG	2 cut(s)	653, 749
EcoT22I	ATGCAT	1 cut(s)	1161
EcoT38I	GRGCYC	1 cut(s)	1014
Esp3I	CGTCTC	1 cut(s)	323
FaeI	CATG	6 cut(s)	230, 455, 872, 915, 1081, 1190
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	6 cut(s)	226, 451, 868, 911, 1077, 1186
FblI	GTMKAC	1 cut(s)	1103
Fnu4HI	GCNGC	6 cut(s)	111, 449, 909, 1140, 1305, 1313
FokI	GGATG	1 cut(s)	380
FriOI	GRGCYC	1 cut(s)	1014
Fsp4HI	GCNGC	6 cut(s)	111, 449, 909, 1140, 1305, 1313
FspBI	CTAG	5 cut(s)	635, 798, 1274, 1368, 1416
GlaI	GCGC	1 cut(s)	1341
GluI	GCNGC	6 cut(s)	111, 449, 909, 1140, 1305, 1313
HaeIII	GGCC	3 cut(s)	156, 170, 482
HapII	CCGG	6 cut(s)	77, 84, 140, 991, 1267, 1348
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	1342
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	6 cut(s)	230, 455, 872, 915, 1081, 1190
Hin6I	GCGC	1 cut(s)	1340
HinP1I	GCGC	1 cut(s)	1340
HincII	GTYRAC	1 cut(s)	1396
HindII	GTYRAC	1 cut(s)	1396
HindIII	AAGCTT	2 cut(s)	610, 1118
HpaI	GTTAAC	1 cut(s)	1396
HpaII	CCGG	6 cut(s)	77, 84, 140, 991, 1267, 1348
HphI	GGTGA	1 cut(s)	976
Hpy166II	GTNNAC	3 cut(s)	917, 1104, 1396
Hpy188I	TCNGA	5 cut(s)	190, 265, 699, 853, 1111
Hpy188III	TCNNGA	9 cut(s)	164, 635, 824, 980, 1052, 1083, 1202, 1267, 1274
Hpy8I	GTNNAC	3 cut(s)	917, 1104, 1396
Hpy99I	CGWCG	2 cut(s)	122, 176
HpyAV	CCTTC	2 cut(s)	97, 487
HpyCH4III	ACNGT	3 cut(s)	122, 381, 1006
HpyCH4IV	ACGT	2 cut(s)	72, 880
HpyF10VI	GCNNNNNNNGC	2 cut(s)	914, 944
HpyF3I	CTNAG	7 cut(s)	264, 298, 361, 424, 714, 897, 1182
HpySE526I	ACGT	2 cut(s)	72, 880
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	6 cut(s)	230, 455, 872, 915, 1081, 1190
HspAI	GCGC	1 cut(s)	1340
Kpn2I	TCCGGA	1 cut(s)	1266
KspAI	GTTAAC	1 cut(s)	1396
Kzo9I	GATC	2 cut(s)	1072, 1085
LmnI	GCTCC	4 cut(s)	285, 742, 1330, 1408
Lsp1109I	GCAGC	3 cut(s)	920, 1126, 1291
LweI	GCATC	6 cut(s)	181, 199, 358, 985, 1146, 1312
MaeI	CTAG	5 cut(s)	635, 798, 1274, 1368, 1416
MaeII	ACGT	2 cut(s)	72, 880
MaeIII	GTNAC	4 cut(s)	142, 149, 381, 717
MalI	GATC	2 cut(s)	1074, 1087
MbiI	CCGCTC	1 cut(s)	1380
MboI	GATC	2 cut(s)	1072, 1085
MboII	GAAGA	9 cut(s)	28, 31, 40, 49, 52, 55, 218, 314, 440
MfeI	CAATTG	2 cut(s)	443, 1041
MflI	RGATCY	1 cut(s)	1085
MhlI	GDGCHC	3 cut(s)	727, 919, 1014
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	3 cut(s)	526, 714, 1230
Mph1103I	ATGCAT	1 cut(s)	1161
MroI	TCCGGA	1 cut(s)	1266
MseI	TTAA	6 cut(s)	375, 627, 678, 816, 1352, 1395
MslI	CAYNNNNRTG	2 cut(s)	456, 1164
MspA1I	CMGCKG	1 cut(s)	781
MspI	CCGG	6 cut(s)	77, 84, 140, 991, 1267, 1348
MspR9I	CCNGG	3 cut(s)	140, 655, 751
MunI	CAATTG	2 cut(s)	443, 1041
MvaI	CCWGG	2 cut(s)	655, 751
MwoI	GCNNNNNNNGC	2 cut(s)	914, 944
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	2 cut(s)	1072, 1085
NlaIII	CATG	6 cut(s)	230, 455, 872, 915, 1081, 1190
NlaIV	GGNNCC	1 cut(s)	281
NsiI	ATGCAT	1 cut(s)	1161
NspI	RCATGY	3 cut(s)	872, 915, 1190
NspV	TTCGAA	1 cut(s)	101
PaeI	GCATGC	1 cut(s)	872
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 248
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	6 cut(s)	112, 450, 910, 1141, 1306, 1314
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
PshAI	GACNNNNGTC	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	1014
Psp1406I	AACGTT	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	653, 749
PspGI	CCWGG	2 cut(s)	653, 749
PspN4I	GGNNCC	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	807
PsuI	RGATCY	1 cut(s)	1085
PsyI	GACNNNGTC	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	781
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	2 cut(s)	456, 1164
SacI	GAGCTC	1 cut(s)	1014
SaqAI	TTAA	6 cut(s)	375, 627, 678, 816, 1352, 1395
SatI	GCNGC	6 cut(s)	111, 449, 909, 1140, 1305, 1313
Sau3AI	GATC	2 cut(s)	1072, 1085
SchI	GAGTC	1 cut(s)	614
ScrFI	CCNGG	3 cut(s)	140, 655, 751
SduI	GDGCHC	3 cut(s)	727, 919, 1014
SfaNI	GCATC	6 cut(s)	181, 199, 358, 985, 1146, 1312
SfcI	CTRYAG	1 cut(s)	803
SfuI	TTCGAA	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	456, 1164
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
SphI	GCATGC	1 cut(s)	872
SsiI	CCGC	5 cut(s)	111, 448, 994, 1313, 1380
SspMI	CTAG	5 cut(s)	635, 798, 1274, 1368, 1416
SstI	GAGCTC	1 cut(s)	1014
StyD4I	CCNGG	3 cut(s)	138, 653, 749
TaaI	ACNGT	3 cut(s)	122, 381, 1006
TaiI	ACGT	2 cut(s)	75, 883
TaqI	TCGA	3 cut(s)	101, 568, 1071
TatI	WGTACW	1 cut(s)	502
TauI	GCSGC	3 cut(s)	113, 451, 1315
Tru1I	TTAA	6 cut(s)	375, 627, 678, 816, 1352, 1395
Tru9I	TTAA	6 cut(s)	375, 627, 678, 816, 1352, 1395
TscAI	CASTG	2 cut(s)	924, 1069
TseI	GCWGC	3 cut(s)	908, 1139, 1304
TspDTI	ATGAA	6 cut(s)	405, 424, 468, 594, 1236, 1275
TspGWI	ACGGA	3 cut(s)	257, 347, 1236
TspRI	CASTG	2 cut(s)	924, 1069
Tth111I	GACNNNGTC	1 cut(s)	134
VneI	GTGCAC	1 cut(s)	915
XapI	RAATTY	1 cut(s)	1242
XbaI	TCTAGA	2 cut(s)	634, 1273
XceI	RCATGY	3 cut(s)	872, 915, 1190
XmiI	GTMKAC	1 cut(s)	1103
XspI	CTAG	5 cut(s)	635, 798, 1274, 1368, 1416
Zsp2I	ATGCAT	1 cut(s)	1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.