Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004360

Physical Location & Seq

Genomic Coordinates Forward (+)

18427938 .. 18431429

Gene Structure 3492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15590.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGATAAAGCACTTCCTGGCATCCTCCCTACAGACGAAACAAAATCCGATCGAGACAAATCTCAGTGAAGGAAAAATCCAACAGCAACAAGTCGGATCCGGGTTCGGGTCTGTCGGTACGATTCGATTTCATTCTCGGGTGGTGGCAGGGAAAGAGGCGGAGCATTTTGTGAGCCTAACAATGGAGGACGATAAGAAGAAGAAGAAGAGGAACAAGAAGAAGAAGAACAAGCAGGGCGAGGCCACCGACGATGTTCCTGTTGCCGGAAACGGACAAGCTTCCCAGGCCGCAGCAGATGTTCATACCGATGATGCCCCCGCCGTCGGCGGTGGCCAAGTTTCAGAGGCCGGTGGCGGTGCTCGTTCCGATGCTGAGCGAGATGGAGACGGAGATGTGAATGGGAAGAGGCACGAGGGCAATGGCACGGAATCTAGATTATTAGCTGAATCTAAGAAAAATTGGCTCCAAAAAGAGGCTGCATTAGAAGAAACAATCAAACAATTGCAAATCGAAAAGGACGTATACATACAGAAAGAGGCTACATTAGAGGATACTATTAAACGATTACGGAATGAGAAGGATTTGCATATACTGAAAGAGCCAACGCTAGAAGATACAATAAAGCAATTGCGGGATGAAAAGGATTCACATATACAGAAAGAGGCTGGTCTACAGATGGAAAATGATCAATTACAGAGCGAAAAAGTTTTGTGGCTTCAGAAAGAGGTTGGATTAGAGGAGAGAATTGGTCGGTTAGTAGATGAAAACGGCACTTTGCATTCGGAAAAGGCAAGCTTACAGGAAAAGATTAAACATCTAGACGGAGATAGAGACACTTGGATTCTAAAGGAGGATTCGTTTAAAGAAACAATAGCAACTCTGAATGATGATATTGCTAGATTACGAGCACAGGTATCGGAATTGGAGCAATCCAGGAATAATCTTGTACAAGAAAATCAACAGCTGATGGAAAACATTTCTAGTTTGCAGTTGCAAATTAAGAATCTTGAGAGTGTCTCCTCTACTCCATCATCAGACGACCTTGCAAAGCATGCTTCGGAACGTGAGGAGTTGAACTCTCAGGTTGAAGCAGCATGTTCACTTGTTGAGAAATTAGTTGCAGAAAATGCAGAGCTTGTTGAGAAGGTGAATGAGTTGTATGGTGAACTTGACCAACGGAGCCCAACAGTTGAACTCACTTCAACAGCTTCAACAGCAGAATCTAATACAACAGTTGTTCCTCCTGAAACTGTCAGTGTCATCCATCCCAGATCCAATGAGGATATGTCAACATCAGACCAGAAGCTTGATTCTCCAAAAGATGTTCCAATCAAACAGGAGATGCATAGTAATGGTAATGTGGATTCTGAACATGCTGCTTTAGTTCCAGAGTTGCCAGTATCTGATGAAATTAGTGAAATTGTGCAAATTCCGTTGGATGAGAATGAAGTCGGGAACCCAGAGGTGTCTCTCGAGGATGACAAAAATGCTGCTGTGCCACTTATAGAAGCTCCCCTGATCGGTGCTCCTTTCCGGTTAATGTCATATGTTGCTAGATATGTTAGCGGTGCTGACTTGGTTAACAAGGGTTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

533

Amino Acids

58.66

Weight (kDa)

4.84

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38580 AT2G38580 AT2G38580
fragaria_vesca	FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531
malus_domestica	MD12G1191100.v1.1
prunus_persica	Prupe.6G296200_v2.0.a1 Prupe.6G296200_v2.0.a1
pyrus_communis	pycom04g15590 pycom12g17830
rosa_chinensis	RchiOBHm_Chr3g0460131
rosa_laevigata	RLG00000025041
rosa_multiflora	Rmu_sc0000449.1_g000051 Rmu_sc0010911.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419810
rosa_rugosa	Rorug03G0040200 Rorug03G0040300 Rorug03G0040400
rosa_samantha	Rh3AG098200 Rh3BG101300 Rh3CG103400 Rh3DG102600 Rh5BG300100 Rh5DG309000 Rh7DG221400
rosa_wichuraiana	Rw3G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	522, 670
AciI	CCGC	7 cut(s)	158, 288, 318, 327, 354, 631, 1566
AclWI	GGATC	3 cut(s)	90, 103, 1266
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	1428
AcuI	CTGAAG	1 cut(s)	701
AfaI	GTAC	2 cut(s)	118, 948
AfiI	CCNNNNNNNGG	6 cut(s)	105, 181, 263, 323, 472, 1520
AgsI	TTSAA	5 cut(s)	1075, 1088, 1193, 1203, 1212
AjnI	CCWGG	3 cut(s)	15, 282, 932
AluBI	AGCT	8 cut(s)	278, 443, 795, 964, 1135, 1208, 1306, 1511
AluI	AGCT	8 cut(s)	278, 443, 795, 964, 1135, 1208, 1306, 1511
Alw21I	GWGCWC	3 cut(s)	361, 910, 1528
Alw26I	GTCTC	5 cut(s)	47, 378, 825, 1021, 1473
AlwI	GGATC	3 cut(s)	90, 103, 1266
AlwNI	CAGNNNCTG	1 cut(s)	1403
Ama87I	CYCGRG	2 cut(s)	135, 1472
AoxI	GGCC	4 cut(s)	240, 285, 331, 345
ApeKI	GCWGC	5 cut(s)	290, 476, 1091, 1376, 1490
ApoI	RAATTY	1 cut(s)	1428
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	1159, 1175
AvaI	CYCGRG	2 cut(s)	135, 1472
BalI	TGGCCA	1 cut(s)	333
BamHI	GGATCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	1184
BauI	CACGAG	1 cut(s)	410
Bbv12I	GWGCWC	3 cut(s)	361, 910, 1528
BbvI	GCAGC	5 cut(s)	302, 463, 1103, 1363, 1477
BccI	CCATC	5 cut(s)	374, 670, 961, 1036, 1272
BceAI	ACGGC	2 cut(s)	305, 784
BcgI	CGANNNNNNTGC	2 cut(s)	897, 931
BciT130I	CCWGG	3 cut(s)	17, 284, 934
BciVI	GTATCC	1 cut(s)	544
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	100
BcoDI	GTCTC	5 cut(s)	47, 378, 825, 1021, 1473
BfaI	CTAG	6 cut(s)	432, 608, 818, 897, 981, 1554
BfmI	CTRYAG	2 cut(s)	29, 671
BfuI	GTATCC	1 cut(s)	544
BisI	GCNGC	6 cut(s)	288, 291, 477, 1092, 1377, 1491
BlpI	GCTNAGC	1 cut(s)	372
BlsI	GCNGC	6 cut(s)	289, 292, 478, 1093, 1378, 1492
Bme1390I	CCNGG	4 cut(s)	17, 100, 284, 934
BmeT110I	CYCGRG	2 cut(s)	135, 1472
BmiI	GGNNCC	4 cut(s)	97, 464, 1181, 1457
BmrFI	CCNGG	4 cut(s)	17, 100, 284, 934
BmsI	GCATC	4 cut(s)	29, 301, 358, 1332
BplI	GAGNNNNNCTC	4 cut(s)	1001, 1033, 1061, 1093
Bpu1102I	GCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	1028
BpuMI	CCSGG	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	282
BsaWI	WCCGGW	1 cut(s)	1533
BsaXI	ACNNNNNCTCC	2 cut(s)	842, 872
Bsc4I	CCNNNNNNNGG	6 cut(s)	105, 181, 263, 323, 472, 1520
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	1397
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	3 cut(s)	17, 284, 934
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	6 cut(s)	20, 640, 1260, 1264, 1444, 1483
BseLI	CCNNNNNNNGG	6 cut(s)	105, 181, 263, 323, 472, 1520
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	3 cut(s)	76, 363, 1094
BseNI	ACTGG	1 cut(s)	1397
BseRI	GAGGAG	3 cut(s)	752, 1009, 1082
BseXI	GCAGC	5 cut(s)	302, 463, 1103, 1363, 1477
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	4 cut(s)	242, 287, 333, 347
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	3 cut(s)	361, 910, 1528
BsiHKCI	CYCGRG	2 cut(s)	135, 1472
BsiSI	CCGG	4 cut(s)	99, 264, 348, 1534
BslI	CCNNNNNNNGG	6 cut(s)	105, 181, 263, 323, 472, 1520
BsmAI	GTCTC	5 cut(s)	47, 378, 825, 1021, 1473
BsmBI	CGTCTC	1 cut(s)	378
BsmI	GAATGC	1 cut(s)	778
BsnI	GGCC	4 cut(s)	242, 287, 333, 347
BsoBI	CYCGRG	2 cut(s)	135, 1472
Bsp1286I	GDGCHC	4 cut(s)	361, 910, 1184, 1528
Bsp1407I	TGTACA	1 cut(s)	946
Bsp143I	GATC	5 cut(s)	48, 95, 685, 1271, 1518
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	7 cut(s)	158, 288, 318, 327, 354, 631, 1566
BspANI	GGCC	4 cut(s)	242, 287, 333, 347
BspCNI	CTCAG	3 cut(s)	75, 364, 1093
BspLI	GGNNCC	4 cut(s)	97, 464, 1181, 1457
BspPI	GGATC	3 cut(s)	90, 103, 1266
BsrDI	GCAATG	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	347
BsrGI	TGTACA	1 cut(s)	946
BsrI	ACTGG	1 cut(s)	1397
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	5 cut(s)	48, 95, 685, 1271, 1518
BssNAI	GTATAC	1 cut(s)	523
BssSI	CACGAG	1 cut(s)	410
Bst1107I	GTATAC	1 cut(s)	523
Bst2BI	CACGAG	1 cut(s)	410
Bst2UI	CCWGG	3 cut(s)	17, 284, 934
Bst4CI	ACNGT	3 cut(s)	1189, 1234, 1252
Bst6I	CTCTTC	2 cut(s)	200, 398
BstAPI	GCANNNNNTGC	2 cut(s)	1052, 1127
BstAUI	TGTACA	1 cut(s)	946
BstC8I	GCNNGC	2 cut(s)	793, 1053
BstDEI	CTNAG	4 cut(s)	62, 372, 450, 1080
BstF5I	GGATG	6 cut(s)	20, 640, 1260, 1264, 1444, 1483
BstKTI	GATC	5 cut(s)	51, 98, 688, 1274, 1521
BstMAI	GTCTC	5 cut(s)	47, 378, 825, 1021, 1473
BstMBI	GATC	5 cut(s)	48, 95, 685, 1271, 1518
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 1052, 1127, 1214
BstNI	CCWGG	3 cut(s)	17, 284, 934
BstNSI	RCATGY	3 cut(s)	1055, 1098, 1376
BstSCI	CCNGG	4 cut(s)	15, 98, 282, 932
BstSFI	CTRYAG	2 cut(s)	29, 671
BstV1I	GCAGC	5 cut(s)	302, 463, 1103, 1363, 1477
BstX2I	RGATCY	2 cut(s)	95, 1271
BstYI	RGATCY	2 cut(s)	95, 1271
BstZ17I	GTATAC	1 cut(s)	523
BsuI	GTATCC	1 cut(s)	544
BsuRI	GGCC	4 cut(s)	242, 287, 333, 347
BtsCI	GGATG	6 cut(s)	20, 640, 1260, 1264, 1444, 1483
BtsIMutI	CAGTG	2 cut(s)	70, 1261
Cac8I	GCNNGC	2 cut(s)	793, 1053
CaiI	CAGNNNCTG	1 cut(s)	1403
Cfr10I	RCCGGY	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	117, 947
CviAII	CATG	3 cut(s)	1052, 1095, 1373
CviQI	GTAC	2 cut(s)	117, 947
DdeI	CTNAG	4 cut(s)	62, 372, 450, 1080
DpnI	GATC	5 cut(s)	50, 97, 687, 1273, 1520
DpnII	GATC	5 cut(s)	48, 95, 685, 1271, 1518
DraI	TTTAAA	1 cut(s)	862
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	200, 398
EarI	CTCTTC	2 cut(s)	200, 398
EciI	GGCGGA	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	1184
Eco57I	CTGAAG	1 cut(s)	701
Eco88I	CYCGRG	2 cut(s)	135, 1472
EcoRII	CCWGG	3 cut(s)	15, 282, 932
EcoT22I	ATGCAT	1 cut(s)	1347
EcoT38I	GRGCYC	1 cut(s)	1184
Esp3I	CGTCTC	1 cut(s)	378
FaeI	CATG	3 cut(s)	1055, 1098, 1376
FalI	AAGNNNNNCTT	2 cut(s)	779, 811
FatI	CATG	3 cut(s)	1051, 1094, 1372
FauI	CCCGC	2 cut(s)	325, 624
FauNDI	CATATG	1 cut(s)	1546
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	2 cut(s)	522, 670
Fnu4HI	GCNGC	6 cut(s)	288, 291, 477, 1092, 1377, 1491
FokI	GGATG	6 cut(s)	7, 647, 1247, 1251, 1451, 1490
FriOI	GRGCYC	1 cut(s)	1184
Fsp4HI	GCNGC	6 cut(s)	288, 291, 477, 1092, 1377, 1491
FspBI	CTAG	6 cut(s)	432, 608, 818, 897, 981, 1554
GluI	GCNGC	6 cut(s)	288, 291, 477, 1092, 1377, 1491
HaeIII	GGCC	4 cut(s)	242, 287, 333, 347
HapII	CCGG	4 cut(s)	99, 264, 348, 1534
Hin1II	CATG	3 cut(s)	1055, 1098, 1376
HincII	GTYRAC	2 cut(s)	1290, 1582
HindII	GTYRAC	2 cut(s)	1290, 1582
HindIII	AAGCTT	3 cut(s)	276, 793, 1304
HpaI	GTTAAC	1 cut(s)	1582
HpaII	CCGG	4 cut(s)	99, 264, 348, 1534
HphI	GGTGA	2 cut(s)	1159, 1175
Hpy166II	GTNNAC	6 cut(s)	523, 671, 1100, 1166, 1290, 1582
Hpy188III	TCNNGA	8 cut(s)	52, 432, 818, 1007, 1244, 1388, 1453, 1472
Hpy8I	GTNNAC	6 cut(s)	523, 671, 1100, 1166, 1290, 1582
Hpy99I	CGWCG	2 cut(s)	251, 326
HpyAV	CCTTC	3 cut(s)	62, 571, 1138
HpyCH4III	ACNGT	3 cut(s)	1189, 1234, 1252
HpyCH4IV	ACGT	2 cut(s)	519, 1063
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 1052, 1127, 1214
HpyF3I	CTNAG	4 cut(s)	62, 372, 450, 1080
HpySE526I	ACGT	2 cut(s)	519, 1063
Hsp92II	CATG	3 cut(s)	1055, 1098, 1376
Ksp22I	TGATCA	1 cut(s)	685
KspAI	GTTAAC	1 cut(s)	1582
Kzo9I	GATC	5 cut(s)	48, 95, 685, 1271, 1518
LmnI	GCTCC	6 cut(s)	160, 468, 925, 1179, 1516, 1531
Lsp1109I	GCAGC	5 cut(s)	302, 463, 1103, 1363, 1477
LweI	GCATC	4 cut(s)	29, 301, 358, 1332
MaeI	CTAG	6 cut(s)	432, 608, 818, 897, 981, 1554
MaeII	ACGT	2 cut(s)	519, 1063
MalI	GATC	5 cut(s)	50, 97, 687, 1273, 1520
MboI	GATC	5 cut(s)	48, 95, 685, 1271, 1518
MfeI	CAATTG	2 cut(s)	500, 626
MflI	RGATCY	2 cut(s)	95, 1271
MhlI	GDGCHC	4 cut(s)	361, 910, 1184, 1528
MlsI	TGGCCA	1 cut(s)	333
MluNI	TGGCCA	1 cut(s)	333
MmeI	TCCRAC	4 cut(s)	73, 103, 709, 1416
Mox20I	TGGCCA	1 cut(s)	333
Mph1103I	ATGCAT	1 cut(s)	1347
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	6 cut(s)	558, 810, 861, 999, 1538, 1581
MslI	CAYNNNNRTG	2 cut(s)	306, 1350
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	964
MspI	CCGG	4 cut(s)	99, 264, 348, 1534
MspR9I	CCNGG	4 cut(s)	17, 100, 284, 934
MunI	CAATTG	2 cut(s)	500, 626
Mva1269I	GAATGC	1 cut(s)	778
MvaI	CCWGG	3 cut(s)	17, 284, 934
MwoI	GCNNNNNNNGC	4 cut(s)	284, 1052, 1127, 1214
NciI	CCSGG	1 cut(s)	100
NdeI	CATATG	1 cut(s)	1546
NdeII	GATC	5 cut(s)	48, 95, 685, 1271, 1518
NlaIII	CATG	3 cut(s)	1055, 1098, 1376
NlaIV	GGNNCC	4 cut(s)	97, 464, 1181, 1457
NsiI	ATGCAT	1 cut(s)	1347
NspI	RCATGY	3 cut(s)	1055, 1098, 1376
PaeI	GCATGC	1 cut(s)	1055
PaeR7I	CTCGAG	1 cut(s)	1472
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PctI	GAATGC	1 cut(s)	778
PfoI	TCCNGGA	1 cut(s)	932
PkrI	GCNGC	6 cut(s)	289, 292, 478, 1093, 1378, 1492
Ple19I	CGATCG	1 cut(s)	51
Psp6I	CCWGG	3 cut(s)	15, 282, 932
PspGI	CCWGG	3 cut(s)	15, 282, 932
PspN4I	GGNNCC	4 cut(s)	97, 464, 1181, 1457
PstNI	CAGNNNCTG	1 cut(s)	1403
PsuI	RGATCY	2 cut(s)	95, 1271
PvuI	CGATCG	1 cut(s)	51
PvuII	CAGCTG	1 cut(s)	964
RsaI	GTAC	2 cut(s)	118, 948
RsaNI	GTAC	2 cut(s)	117, 947
RseI	CAYNNNNRTG	2 cut(s)	306, 1350
SaqAI	TTAA	6 cut(s)	558, 810, 861, 999, 1538, 1581
SatI	GCNGC	6 cut(s)	288, 291, 477, 1092, 1377, 1491
Sau3AI	GATC	5 cut(s)	48, 95, 685, 1271, 1518
ScrFI	CCNGG	4 cut(s)	17, 100, 284, 934
SduI	GDGCHC	4 cut(s)	361, 910, 1184, 1528
SfaNI	GCATC	4 cut(s)	29, 301, 358, 1332
SfcI	CTRYAG	2 cut(s)	29, 671
Sfr274I	CTCGAG	1 cut(s)	1472
SlaI	CTCGAG	1 cut(s)	1472
SmiMI	CAYNNNNRTG	2 cut(s)	306, 1350
SmlI	CTYRAG	2 cut(s)	1007, 1472
SmoI	CTYRAG	2 cut(s)	1007, 1472
SphI	GCATGC	1 cut(s)	1055
SsiI	CCGC	7 cut(s)	158, 288, 318, 327, 354, 631, 1566
SspMI	CTAG	6 cut(s)	432, 608, 818, 897, 981, 1554
StyD4I	CCNGG	4 cut(s)	15, 98, 282, 932
TaaI	ACNGT	3 cut(s)	1189, 1234, 1252
TaiI	ACGT	2 cut(s)	522, 1066
TaqI	TCGA	4 cut(s)	51, 124, 510, 1473
TatI	WGTACW	1 cut(s)	946
TauI	GCSGC	1 cut(s)	290
Tru1I	TTAA	6 cut(s)	558, 810, 861, 999, 1538, 1581
Tru9I	TTAA	6 cut(s)	558, 810, 861, 999, 1538, 1581
TscAI	CASTG	2 cut(s)	70, 1261
TseI	GCWGC	5 cut(s)	290, 476, 1091, 1376, 1490
TspDTI	ATGAA	6 cut(s)	119, 290, 651, 777, 1422, 1461
TspGWI	ACGGA	7 cut(s)	285, 402, 440, 583, 837, 1192, 1422
TspRI	CASTG	2 cut(s)	70, 1261
XapI	RAATTY	1 cut(s)	1428
XbaI	TCTAGA	2 cut(s)	431, 817
XceI	RCATGY	3 cut(s)	1055, 1098, 1376
XhoI	CTCGAG	1 cut(s)	1472
XmiI	GTMKAC	2 cut(s)	522, 670
XspI	CTAG	6 cut(s)	432, 608, 818, 897, 981, 1554
Zsp2I	ATGCAT	1 cut(s)	1347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.