Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004360

Physical Location & Seq

Genomic Coordinates Reverse (-)

5693037 .. 5697150

Gene Structure 4114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09531.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGGAGGCGGAGGATAAGAAGAAGAAGAAGAGGAACAACAAGAAGAAGAAGAACCAAAAGGCCGCCGCCGACGATGCTTCCGTCGCGGAGAACGGCCAGGTTTCATCGTCCGCCGCCGCCGCTGCAGATACTATCTCCAACGGTGTTCAGGTTTCCGGCAACGGTCAATTTCCAAAGCCCGCCGATAATGCTGAAACCAATGGCACCGAACGTTCGTTATTAGCTGAATCTGAGAATAAGGATTGGCTTCAAAAAGAGGCTAAGCTAGAAGAAATGATCAAGCAATTAGAAAAAGAAAAAGACTTGCAGATGCAGAAGGAGGCTACGTTAGAGGGTACTATTAAGGAATTACAGAAACAAAGGGATTCACTTATACAGAAAGAGGCTACGTTAGAAGGTACTATAAAACTATTACAGGATGAGAAAGATGCACATATGCAGAAAGAGGTTACGTTAGAAGATACTATCAAACAATTACAGGAGGAAACTGATTCACATATTCATCTAGAGAACATCCTACAGAAGGAAATTGTACAATTACGGAGTGAAAAAGATTCCTGGCTCAAAAAGGAGGTTGGGTTGGAGGAGAAAATTAGGCGATTAGTAGACAAAAAGTCCACTTTGGATTCTGAAGAGGCAAGCTTACAGGAAAAGATTAAACATCTACAGAGTGATAGAGATAACTGGAATCTAAAGGAGGATTCATTCAAAGAAATGATCGCAACTCAGACAGATAACATTGCTAAACTACGAGCACAGGTGTTGGAATTGGAGCAATCCAGGGATAATCTTGTACAAGAAAACCAACAGCTGATGGGAAATTTATCTAGTCTAGAGTTGCAAATTAAGGATCGTGAGAGTGTTTCCTCTAGTCGCGCATCAGTTGAAGGTGCAAAGCACGCTGCAGAACGTGAAGAGCTGAACTCTCAAATTGAAGCAGCATGTGCACTGGTTGAGAAATTAATTACAGAGAATGCAGACCTTGTTGAAAAGATGAACGAGTTATATGTTGAACTTGAGCGGCATAGTGCAAAAGGTGGGCTTCCTTTAAGTACAGCAGTCTTACCTGGTGAAACTGCCATTATCATCAATCCCATGCCCAGATCCAGTGAGGATATGTCTACATCAGGCCAGAAGCTTTATTCCTCAGAAGTTGTTCCGCATAAAGTGGAGACACCTAGTTACGGTAACATGGATTCTCAGCAGGCTGCTTTATTGCAAAGTAATGGTAATTTGGATATTCAGCATCCTGAATTAGTTCCAAATTCACCCATATCGTATGAGTCCAGGGAAAGTGAAATCATGCAAATTCCTTTGGACGCCTCTGAAGTCCAGGATCTAGAGTTGCAGTCTGCTACAGAGGTTACAAACGAAGCTGTCTCAATTACAGATGCTCCCCTTATTGGTGCACCTTTCCGGTTAGTGTCATTTGTTGCTAGATATGTCAGTGGTGCTGACTTGATTAGCAAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

492

Amino Acids

54.68

Weight (kDa)

4.87

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38580 AT2G38580 AT2G38580
fragaria_vesca	FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531 FvH4_6g09531
malus_domestica	MD12G1191100.v1.1
prunus_persica	Prupe.6G296200_v2.0.a1 Prupe.6G296200_v2.0.a1
pyrus_communis	pycom04g15590 pycom12g17830
rosa_chinensis	RchiOBHm_Chr3g0460131
rosa_laevigata	RLG00000025041
rosa_multiflora	Rmu_sc0000449.1_g000051 Rmu_sc0010911.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419810
rosa_rugosa	Rorug03G0040200 Rorug03G0040300 Rorug03G0040400
rosa_samantha	Rh3AG098200 Rh3BG101300 Rh3CG103400 Rh3DG102600 Rh5BG300100 Rh5DG309000 Rh7DG221400
rosa_wichuraiana	Rw3G008290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccBSI	CCGCTC	1 cut(s)	1021
AccI	GTMKAC	2 cut(s)	606, 1121
AccII	CGCG	2 cut(s)	86, 876
AclI	AACGTT	1 cut(s)	211
AclWI	GGATC	3 cut(s)	858, 1098, 1344
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	3 cut(s)	820, 1264, 1308
AcuI	CTGAAG	2 cut(s)	651, 1347
AcyI	GRCGYC	1 cut(s)	1320
AfaI	GTAC	5 cut(s)	337, 400, 534, 795, 1054
AfiI	CCNNNNNNNGG	3 cut(s)	523, 1184, 1403
AgsI	TTSAA	6 cut(s)	251, 709, 887, 935, 989, 1013
AhdI	GACNNNNNGTC	1 cut(s)	613
AjnI	CCWGG	6 cut(s)	96, 557, 779, 1066, 1286, 1332
AluBI	AGCT	7 cut(s)	224, 265, 642, 811, 919, 1138, 1376
AluI	AGCT	7 cut(s)	224, 265, 642, 811, 919, 1138, 1376
Alw21I	GWGCWC	3 cut(s)	757, 949, 1411
Alw26I	GTCTC	2 cut(s)	1166, 1384
Alw44I	GTGCAC	2 cut(s)	945, 1407
AlwI	GGATC	3 cut(s)	858, 1098, 1344
AoxI	GGCC	3 cut(s)	60, 94, 1129
ApaLI	GTGCAC	2 cut(s)	945, 1407
ApeKI	GCWGC	4 cut(s)	122, 902, 938, 1208
ApoI	RAATTY	3 cut(s)	820, 1264, 1308
AseI	ATTAAT	1 cut(s)	962
Asp700I	GAANNNNTTC	2 cut(s)	1155, 1257
AspLEI	GCGC	1 cut(s)	878
AsuHPI	GGTGA	2 cut(s)	1082, 1260
BaeGI	GKGCMC	2 cut(s)	949, 1411
BanI	GGYRCC	1 cut(s)	203
Bbv12I	GWGCWC	3 cut(s)	757, 949, 1411
BbvI	GCAGC	4 cut(s)	109, 889, 950, 1195
BccI	CCATC	1 cut(s)	808
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	6 cut(s)	98, 559, 781, 1068, 1288, 1334
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	1166, 1384
BfaI	CTAG	8 cut(s)	266, 506, 828, 833, 870, 1179, 1340, 1437
BfmI	CTRYAG	5 cut(s)	123, 518, 665, 903, 1356
BlpI	GCTNAGC	1 cut(s)	261
Bme1390I	CCNGG	6 cut(s)	98, 559, 781, 1068, 1288, 1334
BmeRI	GACNNNNNGTC	1 cut(s)	613
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	6 cut(s)	98, 559, 781, 1068, 1288, 1334
BmsI	GCATC	6 cut(s)	64, 300, 418, 887, 1255, 1381
BplI	GAGNNNNNCTC	2 cut(s)	908, 940
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	1037
BsaHI	GRCGYC	1 cut(s)	1320
BsaJI	CCNNGG	2 cut(s)	780, 1287
BsaWI	WCCGGW	1 cut(s)	1416
BsaXI	ACNNNNNCTCC	6 cut(s)	311, 341, 563, 593, 1378, 1408
Bsc4I	CCNNNNNNNGG	3 cut(s)	523, 1184, 1403
Bse1I	ACTGG	3 cut(s)	689, 954, 1107
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	6 cut(s)	98, 559, 781, 1068, 1288, 1334
BseDI	CCNNGG	2 cut(s)	780, 1287
BseGI	GGATG	3 cut(s)	424, 513, 1246
BseLI	CCNNNNNNNGG	3 cut(s)	523, 1184, 1403
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	4 cut(s)	222, 740, 1161, 1214
BseNI	ACTGG	3 cut(s)	689, 954, 1107
BseRI	GAGGAG	1 cut(s)	599
BseSI	GKGCMC	2 cut(s)	949, 1411
BseXI	GCAGC	4 cut(s)	109, 889, 950, 1195
Bsh1236I	CGCG	2 cut(s)	86, 876
BshFI	GGCC	3 cut(s)	62, 96, 1131
BshNI	GGYRCC	1 cut(s)	203
BsiHKAI	GWGCWC	3 cut(s)	757, 949, 1411
BsiSI	CCGG	2 cut(s)	156, 1417
BslI	CCNNNNNNNGG	3 cut(s)	523, 1184, 1403
BsmAI	GTCTC	2 cut(s)	1166, 1384
BsmI	GAATGC	1 cut(s)	979
BsnI	GGCC	3 cut(s)	62, 96, 1131
Bsp1286I	GDGCHC	3 cut(s)	757, 949, 1411
Bsp1407I	TGTACA	2 cut(s)	532, 793
Bsp143I	GATC	5 cut(s)	276, 717, 850, 1103, 1336
Bsp1720I	GCTNAGC	1 cut(s)	261
BspANI	GGCC	3 cut(s)	62, 96, 1131
BspCNI	CTCAG	4 cut(s)	223, 739, 1160, 1213
BspFNI	CGCG	2 cut(s)	86, 876
BspLI	GGNNCC	1 cut(s)	205
BspMAI	CTGCAG	2 cut(s)	127, 907
BspPI	GGATC	3 cut(s)	858, 1098, 1344
BspQI	GCTCTTC	1 cut(s)	909
BspT107I	GGYRCC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	1021
BsrDI	GCAATG	1 cut(s)	738
BsrGI	TGTACA	2 cut(s)	532, 793
BsrI	ACTGG	3 cut(s)	689, 954, 1107
BssECI	CCNNGG	2 cut(s)	780, 1287
BssMI	GATC	5 cut(s)	276, 717, 850, 1103, 1336
BssNI	GRCGYC	1 cut(s)	1320
Bst2UI	CCWGG	6 cut(s)	98, 559, 781, 1068, 1288, 1334
Bst4CI	ACNGT	3 cut(s)	143, 164, 1187
Bst6I	CTCTTC	3 cut(s)	23, 627, 909
BstACI	GRCGYC	1 cut(s)	1320
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstAUI	TGTACA	2 cut(s)	532, 793
BstC8I	GCNNGC	4 cut(s)	180, 640, 900, 1206
BstDEI	CTNAG	5 cut(s)	231, 261, 726, 1147, 1200
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	3 cut(s)	424, 513, 1246
BstFNI	CGCG	2 cut(s)	86, 876
BstHHI	GCGC	1 cut(s)	878
BstKTI	GATC	5 cut(s)	279, 720, 853, 1106, 1339
BstMAI	GTCTC	2 cut(s)	1166, 1384
BstMBI	GATC	5 cut(s)	276, 717, 850, 1103, 1336
BstMWI	GCNNNNNNNGC	7 cut(s)	74, 83, 119, 122, 188, 899, 944
BstNI	CCWGG	6 cut(s)	98, 559, 781, 1068, 1288, 1334
BstNSI	RCATGY	1 cut(s)	945
BstSCI	CCNGG	6 cut(s)	96, 557, 779, 1066, 1286, 1332
BstSFI	CTRYAG	5 cut(s)	123, 518, 665, 903, 1356
BstSLI	GKGCMC	2 cut(s)	949, 1411
BstUI	CGCG	2 cut(s)	86, 876
BstV1I	GCAGC	4 cut(s)	109, 889, 950, 1195
BstX2I	RGATCY	2 cut(s)	1103, 1336
BstYI	RGATCY	2 cut(s)	1103, 1336
BsuRI	GGCC	3 cut(s)	62, 96, 1131
BtsCI	GGATG	3 cut(s)	424, 513, 1246
BtsIMutI	CAGTG	3 cut(s)	947, 1114, 1453
Cac8I	GCNNGC	4 cut(s)	180, 640, 900, 1206
CfoI	GCGC	1 cut(s)	878
CseI	GACGC	1 cut(s)	1328
CsiI	ACCWGGT	1 cut(s)	1066
Csp6I	GTAC	5 cut(s)	336, 399, 533, 794, 1053
CviAII	CATG	4 cut(s)	942, 1096, 1192, 1303
CviQI	GTAC	5 cut(s)	336, 399, 533, 794, 1053
DdeI	CTNAG	5 cut(s)	231, 261, 726, 1147, 1200
DpnI	GATC	5 cut(s)	278, 719, 852, 1105, 1338
DpnII	GATC	5 cut(s)	276, 717, 850, 1103, 1336
DriI	GACNNNNNGTC	1 cut(s)	613
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	3 cut(s)	23, 627, 909
Eam1105I	GACNNNNNGTC	1 cut(s)	613
EarI	CTCTTC	3 cut(s)	23, 627, 909
EciI	GGCGGA	2 cut(s)	23, 100
Eco57I	CTGAAG	2 cut(s)	651, 1347
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoRII	CCWGG	6 cut(s)	96, 557, 779, 1066, 1286, 1332
FaeI	CATG	4 cut(s)	945, 1099, 1195, 1306
FalI	AAGNNNNNCTT	2 cut(s)	1026, 1058
FatI	CATG	4 cut(s)	941, 1095, 1191, 1302
FauI	CCCGC	1 cut(s)	187
FauNDI	CATATG	1 cut(s)	435
FbaI	TGATCA	1 cut(s)	276
FblI	GTMKAC	2 cut(s)	606, 1121
FokI	GGATG	3 cut(s)	431, 500, 1233
FspBI	CTAG	8 cut(s)	266, 506, 828, 833, 870, 1179, 1340, 1437
GlaI	GCGC	1 cut(s)	877
HaeIII	GGCC	3 cut(s)	62, 96, 1131
HapII	CCGG	2 cut(s)	156, 1417
HgaI	GACGC	1 cut(s)	1328
HhaI	GCGC	1 cut(s)	878
Hin1I	GRCGYC	1 cut(s)	1320
Hin1II	CATG	4 cut(s)	945, 1099, 1195, 1306
Hin6I	GCGC	1 cut(s)	876
HinP1I	GCGC	1 cut(s)	876
HindIII	AAGCTT	2 cut(s)	640, 1136
HinfI	GANTC	9 cut(s)	227, 365, 491, 554, 626, 688, 701, 1196, 1283
HpaII	CCGG	2 cut(s)	156, 1417
HphI	GGTGA	2 cut(s)	1082, 1260
Hpy166II	GTNNAC	5 cut(s)	607, 618, 947, 1122, 1409
Hpy188I	TCNGA	5 cut(s)	232, 631, 729, 1150, 1327
Hpy188III	TCNNGA	5 cut(s)	506, 833, 854, 1250, 1340
Hpy8I	GTNNAC	5 cut(s)	607, 618, 947, 1122, 1409
Hpy99I	CGWCG	2 cut(s)	74, 86
HpyAV	CCTTC	4 cut(s)	310, 389, 517, 881
HpyCH4III	ACNGT	3 cut(s)	143, 164, 1187
HpyCH4IV	ACGT	5 cut(s)	211, 326, 389, 452, 910
HpyF10VI	GCNNNNNNNGC	7 cut(s)	74, 83, 119, 122, 188, 899, 944
HpyF3I	CTNAG	5 cut(s)	231, 261, 726, 1147, 1200
HpySE526I	ACGT	5 cut(s)	211, 326, 389, 452, 910
Hsp92I	GRCGYC	1 cut(s)	1320
Hsp92II	CATG	4 cut(s)	945, 1099, 1195, 1306
HspAI	GCGC	1 cut(s)	876
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	5 cut(s)	276, 717, 850, 1103, 1336
LguI	GCTCTTC	1 cut(s)	909
LmnI	GCTCC	2 cut(s)	772, 1399
Lsp1109I	GCAGC	4 cut(s)	109, 889, 950, 1195
LweI	GCATC	6 cut(s)	64, 300, 418, 887, 1255, 1381
MabI	ACCWGGT	1 cut(s)	1066
MaeI	CTAG	8 cut(s)	266, 506, 828, 833, 870, 1179, 1340, 1437
MaeII	ACGT	5 cut(s)	211, 326, 389, 452, 910
MaeIII	GTNAC	4 cut(s)	448, 1181, 1187, 1363
MalI	GATC	5 cut(s)	278, 719, 852, 1105, 1338
MbiI	CCGCTC	1 cut(s)	1021
MboI	GATC	5 cut(s)	276, 717, 850, 1103, 1336
MflI	RGATCY	2 cut(s)	1103, 1336
MhlI	GDGCHC	3 cut(s)	757, 949, 1411
MlyI	GAGTC	1 cut(s)	1292
MmeI	TCCRAC	3 cut(s)	162, 561, 744
MroXI	GAANNNNTTC	2 cut(s)	1155, 1257
MseI	TTAA	5 cut(s)	342, 657, 846, 962, 1049
MspA1I	CMGCKG	2 cut(s)	122, 811
MspI	CCGG	2 cut(s)	156, 1417
MspR9I	CCNGG	6 cut(s)	98, 559, 781, 1068, 1288, 1334
Mva1269I	GAATGC	1 cut(s)	979
MvaI	CCWGG	6 cut(s)	98, 559, 781, 1068, 1288, 1334
MvnI	CGCG	2 cut(s)	86, 876
MwoI	GCNNNNNNNGC	7 cut(s)	74, 83, 119, 122, 188, 899, 944
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	5 cut(s)	276, 717, 850, 1103, 1336
NlaIII	CATG	4 cut(s)	945, 1099, 1195, 1306
NlaIV	GGNNCC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	945
PciSI	GCTCTTC	1 cut(s)	909
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	979
PdmI	GAANNNNTTC	2 cut(s)	1155, 1257
PfeI	GAWTC	8 cut(s)	227, 365, 491, 554, 626, 688, 701, 1196
PfoI	TCCNGGA	1 cut(s)	1332
PleI	GAGTC	1 cut(s)	1291
PpsI	GAGTC	1 cut(s)	1291
PshBI	ATTAAT	1 cut(s)	962
Psp1406I	AACGTT	1 cut(s)	211
Psp6I	CCWGG	6 cut(s)	96, 557, 779, 1066, 1286, 1332
PspGI	CCWGG	6 cut(s)	96, 557, 779, 1066, 1286, 1332
PspN4I	GGNNCC	1 cut(s)	205
PstI	CTGCAG	2 cut(s)	127, 907
PsuI	RGATCY	2 cut(s)	1103, 1336
PvuII	CAGCTG	1 cut(s)	811
RsaI	GTAC	5 cut(s)	337, 400, 534, 795, 1054
RsaNI	GTAC	5 cut(s)	336, 399, 533, 794, 1053
SapI	GCTCTTC	1 cut(s)	909
SaqAI	TTAA	5 cut(s)	342, 657, 846, 962, 1049
Sau3AI	GATC	5 cut(s)	276, 717, 850, 1103, 1336
SchI	GAGTC	1 cut(s)	1292
ScrFI	CCNGG	6 cut(s)	98, 559, 781, 1068, 1288, 1334
SduI	GDGCHC	3 cut(s)	757, 949, 1411
SexAI	ACCWGGT	1 cut(s)	1066
SfaNI	GCATC	6 cut(s)	64, 300, 418, 887, 1255, 1381
SfcI	CTRYAG	5 cut(s)	123, 518, 665, 903, 1356
SmlI	CTYRAG	1 cut(s)	1016
SmoI	CTYRAG	1 cut(s)	1016
SspMI	CTAG	8 cut(s)	266, 506, 828, 833, 870, 1179, 1340, 1437
StyD4I	CCNGG	6 cut(s)	96, 557, 779, 1066, 1286, 1332
TaaI	ACNGT	3 cut(s)	143, 164, 1187
TaiI	ACGT	5 cut(s)	214, 329, 392, 455, 913
TatI	WGTACW	3 cut(s)	532, 793, 1052
TauI	GCSGC	6 cut(s)	65, 68, 116, 119, 122, 1024
TfiI	GAWTC	8 cut(s)	227, 365, 491, 554, 626, 688, 701, 1196
Tru1I	TTAA	5 cut(s)	342, 657, 846, 962, 1049
Tru9I	TTAA	5 cut(s)	342, 657, 846, 962, 1049
TscAI	CASTG	3 cut(s)	954, 1114, 1453
TseI	GCWGC	4 cut(s)	122, 902, 938, 1208
TspDTI	ATGAA	4 cut(s)	93, 491, 693, 1010
TspGWI	ACGGA	2 cut(s)	70, 556
TspRI	CASTG	3 cut(s)	954, 1114, 1453
VneI	GTGCAC	2 cut(s)	945, 1407
VspI	ATTAAT	1 cut(s)	962
XagI	CCTNNNNNAGG	1 cut(s)	521
XapI	RAATTY	3 cut(s)	820, 1264, 1308
XbaI	TCTAGA	3 cut(s)	505, 832, 1339
XceI	RCATGY	1 cut(s)	945
XmiI	GTMKAC	2 cut(s)	606, 1121
XmnI	GAANNNNTTC	2 cut(s)	1155, 1257
XspI	CTAG	8 cut(s)	266, 506, 828, 833, 870, 1179, 1340, 1437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.