Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Reverse (-)

16147106 .. 16149934

Gene Structure 2829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTCTGGTTTATACAATAACTCATCTTACTTCTCTCCTGCTCGAGCTGCTTCTCCTCAGATTAGAAGCACTCCTGAGATCGACAGCTCTCAGTACTTGACGGAGCTTCTCGCTGAACATCAAAAGCTTACTCCTTTTATGCAGGTCCTACCCATATGTAGCCGTCTATTGAATCAAGAGATGTTCAGGGTCTCTGGAATGATGTCTAACCAAGGATTTGGTGATTTTGATAGACTTCGACACAGAAGTCCCAGCCCTATGGCTTCTTCTAATCTTATGTCTAATGTCTCTAATACCGGGTTAGGAGGCTGGAACGGCCTCTCTCAGGAGAGACTTAGTGGAACACCTGGAATGACAATGGATTGGCAAGGTGCACCTGGAAGCCCCAGTTCATACACCGTCAAAAGGATATTGCGTCTGGAGATTCCTGTAGATAACTATCCTAATTTCAATTTTGTTGGACGACTTCTCGGCCCTAGAGGCAACTCGTTAAAACGCGTTGAAGCTACCACCGGTTGCCGAGTATTCATCAGAGGGAAAGGGTCAATCAAGGATCCCGAAAAGGAAGATAAATTAAGGGGAAGACCTGGCTATGAACACTTGAATGAGCAGCTTCACATCTTAATAGAGGCAGATCTTCCAGCTAGTATTGTGGAGATACGTCTGCGACAAGCTCAAGAAATTATAGAAGAGTTACTAAAGCCTGTGGACGAGTCGCAAGATTTCATAAAGAGACAGCAGCTGAGGGAACTGGCATTGCTAAACTCGAACAACCTGAGGGAAGAGAGTCCGGGGCCAAGCGGAGGTGGAAGCGTTTCGCCTTTCAATTCAAGTGGTAAACGCCCGAAAACAGGATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

286

Amino Acids

31.72

Weight (kDa)

8.99

Isoelectric Point (pI)

64.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	29 - 75	1.3e-14	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	146 - 234	3.2e-21	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	246
Acc36I	ACCTGC	1 cut(s)	133
AccII	CGCG	1 cut(s)	498
AciI	CCGC	1 cut(s)	801
AclWI	GGATC	2 cut(s)	548, 561
AfaI	GTAC	1 cut(s)	95
AfiI	CCNNNNNNNGG	4 cut(s)	325, 405, 803, 851
AflIII	ACRYGT	1 cut(s)	496
AgeI	ACCGGT	1 cut(s)	512
AgsI	TTSAA	6 cut(s)	172, 451, 503, 604, 826, 831
AjnI	CCWGG	3 cut(s)	346, 376, 586
AluBI	AGCT	9 cut(s)	47, 87, 106, 127, 506, 613, 644, 674, 742
AluI	AGCT	9 cut(s)	47, 87, 106, 127, 506, 613, 644, 674, 742
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	4 cut(s)	196, 292, 325, 727
Alw44I	GTGCAC	1 cut(s)	372
AlwI	GGATC	2 cut(s)	548, 561
AlwNI	CAGNNNCTG	1 cut(s)	742
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	3 cut(s)	316, 472, 794
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	3 cut(s)	47, 610, 739
AsiGI	ACCGGT	1 cut(s)	512
Asp700I	GAANNNNTTC	1 cut(s)	814
AspS9I	GGNCC	3 cut(s)	145, 473, 794
AsuC2I	CCSGG	2 cut(s)	298, 792
AsuHPI	GGTGA	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	145
AxyI	CCTNAGG	1 cut(s)	776
BaeGI	GKGCMC	1 cut(s)	376
BamHI	GGATCC	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	589
Bbv12I	GWGCWC	1 cut(s)	376
BbvCI	CCTCAGC	1 cut(s)	743
BbvI	GCAGC	3 cut(s)	34, 622, 751
BceAI	ACGGC	2 cut(s)	147, 331
BciT130I	CCWGG	3 cut(s)	348, 378, 588
BcnI	CCSGG	2 cut(s)	298, 792
BcoDI	GTCTC	4 cut(s)	196, 292, 325, 727
BfaI	CTAG	2 cut(s)	477, 645
BfmI	CTRYAG	1 cut(s)	429
BfuAI	ACCTGC	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	480
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	3 cut(s)	48, 611, 740
BlsI	GCNGC	3 cut(s)	49, 612, 741
BmcAI	AGTACT	1 cut(s)	95
Bme1390I	CCNGG	5 cut(s)	298, 348, 378, 588, 792
Bme18I	GGWCC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	3 cut(s)	145, 473, 794
BmiI	GGNNCC	2 cut(s)	555, 795
BmrFI	CCNGG	5 cut(s)	298, 348, 378, 588, 792
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	845
BmuI	ACTGGG	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	743
BpuEI	CTTGAG	1 cut(s)	660
BpuMI	CCSGG	2 cut(s)	298, 792
BsaBI	GATNNNNATC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	211, 791
BsaWI	WCCGGW	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	4 cut(s)	325, 405, 803, 851
Bse118I	RCCGGY	1 cut(s)	512
Bse1I	ACTGG	2 cut(s)	387, 756
Bse21I	CCTNAGG	1 cut(s)	776
Bse3DI	GCAATG	1 cut(s)	755
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	3 cut(s)	348, 378, 588
BseDI	CCNNGG	2 cut(s)	211, 791
BseGI	GGATG	1 cut(s)	860
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	4 cut(s)	325, 405, 803, 851
BseMI	GCAATG	1 cut(s)	755
BseMII	CTCAG	6 cut(s)	66, 71, 104, 338, 734, 767
BseNI	ACTGG	2 cut(s)	387, 756
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	376
BseXI	GCAGC	3 cut(s)	34, 622, 751
BseYI	CCCAGC	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	498
BshFI	GGCC	3 cut(s)	318, 474, 796
BshTI	ACCGGT	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	3 cut(s)	297, 513, 791
BslFI	GGGAC	1 cut(s)	234
BslI	CCNNNNNNNGG	4 cut(s)	325, 405, 803, 851
BsmAI	GTCTC	4 cut(s)	196, 292, 325, 727
BsmFI	GGGAC	1 cut(s)	234
BsnI	GGCC	3 cut(s)	318, 474, 796
Bso31I	GGTCTC	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	78, 553, 634
BspACI	CCGC	1 cut(s)	801
BspANI	GGCC	3 cut(s)	318, 474, 796
BspCNI	CTCAG	6 cut(s)	67, 70, 103, 337, 735, 768
BspFNI	CGCG	1 cut(s)	498
BspLI	GGNNCC	2 cut(s)	555, 795
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	2 cut(s)	548, 561
BspTNI	GGTCTC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	755
BsrFI	RCCGGY	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	387, 756
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	2 cut(s)	211, 791
BssMI	GATC	3 cut(s)	78, 553, 634
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	3 cut(s)	348, 378, 588
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	2 cut(s)	684, 777
BstDEI	CTNAG	7 cut(s)	57, 75, 90, 324, 335, 743, 776
BstENI	CCTNNNNNAGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	860
BstFNI	CGCG	1 cut(s)	498
BstKTI	GATC	3 cut(s)	81, 556, 637
BstMAI	GTCTC	4 cut(s)	196, 292, 325, 727
BstMBI	GATC	3 cut(s)	78, 553, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 315, 480
BstNI	CCWGG	3 cut(s)	348, 378, 588
BstSCI	CCNGG	5 cut(s)	296, 346, 376, 586, 790
BstSFI	CTRYAG	1 cut(s)	429
BstSLI	GKGCMC	1 cut(s)	376
BstUI	CGCG	1 cut(s)	498
BstV1I	GCAGC	3 cut(s)	34, 622, 751
BstV2I	GAAGAC	1 cut(s)	589
BstX2I	RGATCY	2 cut(s)	553, 634
BstXI	CCANNNNNNTGG	2 cut(s)	218, 259
BstYI	RGATCY	2 cut(s)	553, 634
Bsu36I	CCTNAGG	1 cut(s)	776
BsuRI	GGCC	3 cut(s)	318, 474, 796
BtsCI	GGATG	1 cut(s)	860
BveI	ACCTGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	742
Cfr10I	RCCGGY	1 cut(s)	512
Cfr13I	GGNCC	3 cut(s)	145, 473, 794
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	94
CspAI	ACCGGT	1 cut(s)	512
CspCI	CAANNNNNGTGG	2 cut(s)	814, 849
CviQI	GTAC	1 cut(s)	94
DdeI	CTNAG	7 cut(s)	57, 75, 90, 324, 335, 743, 776
DpnI	GATC	3 cut(s)	80, 555, 636
DpnII	GATC	3 cut(s)	78, 553, 634
DrdI	GACNNNNNNGTC	1 cut(s)	246
DseDI	GACNNNNNNGTC	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	684, 777
EarI	CTCTTC	2 cut(s)	684, 777
Eco130I	CCWWGG	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	145
Eco81I	CCTNAGG	1 cut(s)	776
Eco88I	CYCGRG	1 cut(s)	42
EcoNI	CCTNNNNNAGG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	145
EcoRII	CCWGG	3 cut(s)	346, 376, 586
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaqI	GGGAC	1 cut(s)	234
FauNDI	CATATG	1 cut(s)	155
Fnu4HI	GCNGC	3 cut(s)	48, 611, 740
Fsp4HI	GCNGC	3 cut(s)	48, 611, 740
FspBI	CTAG	2 cut(s)	477, 645
GluI	GCNGC	3 cut(s)	48, 611, 740
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	3 cut(s)	318, 474, 796
HapII	CCGG	3 cut(s)	297, 513, 791
HgaI	GACGC	1 cut(s)	404
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	4 cut(s)	172, 424, 713, 787
HpaII	CCGG	3 cut(s)	297, 513, 791
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	3 cut(s)	374, 709, 839
Hpy188I	TCNGA	2 cut(s)	60, 533
Hpy188III	TCNNGA	7 cut(s)	74, 176, 195, 326, 419, 557, 677
Hpy8I	GTNNAC	3 cut(s)	374, 709, 839
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	661
HpyCH4V	TGCA	2 cut(s)	142, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 315, 480
HpyF3I	CTNAG	7 cut(s)	57, 75, 90, 324, 335, 743, 776
HpySE526I	ACGT	1 cut(s)	661
Kzo9I	GATC	3 cut(s)	78, 553, 634
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	3 cut(s)	34, 622, 751
LweI	GCATC	1 cut(s)	845
MaeI	CTAG	2 cut(s)	477, 645
MaeII	ACGT	1 cut(s)	661
MaeIII	GTNAC	1 cut(s)	693
MalI	GATC	3 cut(s)	80, 555, 636
MboI	GATC	3 cut(s)	78, 553, 634
MboII	GAAGA	6 cut(s)	258, 578, 594, 629, 701, 794
MflI	RGATCY	2 cut(s)	553, 634
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	5 cut(s)	445, 451, 572, 681, 826
MluI	ACGCGT	1 cut(s)	496
MlyI	GAGTC	2 cut(s)	722, 796
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	9 cut(s)	66, 299, 329, 473, 527, 622, 738, 771, 797
MroXI	GAANNNNTTC	1 cut(s)	814
MseI	TTAA	3 cut(s)	491, 575, 623
MslI	CAYNNNNRTG	1 cut(s)	603
MspA1I	CMGCKG	1 cut(s)	742
MspI	CCGG	3 cut(s)	297, 513, 791
MspR9I	CCNGG	5 cut(s)	298, 348, 378, 588, 792
MvaI	CCWGG	3 cut(s)	348, 378, 588
MvnI	CGCG	1 cut(s)	498
MwoI	GCNNNNNNNGC	3 cut(s)	47, 315, 480
NciI	CCSGG	2 cut(s)	298, 792
NdeI	CATATG	1 cut(s)	155
NdeII	GATC	3 cut(s)	78, 553, 634
NlaIV	GGNNCC	2 cut(s)	555, 795
NmeAIII	GCCGAG	2 cut(s)	450, 545
PaeR7I	CTCGAG	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	814
PfeI	GAWTC	2 cut(s)	172, 424
PinAI	ACCGGT	1 cut(s)	512
PkrI	GCNGC	3 cut(s)	49, 612, 741
PleI	GAGTC	2 cut(s)	721, 795
PpsI	GAGTC	2 cut(s)	721, 795
PpuMI	RGGWCCY	1 cut(s)	145
Psp5II	RGGWCCY	1 cut(s)	145
Psp6I	CCWGG	3 cut(s)	346, 376, 586
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	3 cut(s)	346, 376, 586
PspN4I	GGNNCC	2 cut(s)	555, 795
PspPI	GGNCC	3 cut(s)	145, 473, 794
PspPPI	RGGWCCY	1 cut(s)	145
PspXI	VCTCGAGB	1 cut(s)	42
PstNI	CAGNNNCTG	1 cut(s)	742
PsuI	RGATCY	2 cut(s)	553, 634
PvuII	CAGCTG	1 cut(s)	742
RsaI	GTAC	1 cut(s)	95
RsaNI	GTAC	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	603
SaqAI	TTAA	3 cut(s)	491, 575, 623
SatI	GCNGC	3 cut(s)	48, 611, 740
Sau3AI	GATC	3 cut(s)	78, 553, 634
Sau96I	GGNCC	3 cut(s)	145, 473, 794
ScaI	AGTACT	1 cut(s)	95
SchI	GAGTC	2 cut(s)	722, 796
ScrFI	CCNGG	5 cut(s)	298, 348, 378, 588, 792
SduI	GDGCHC	1 cut(s)	376
SfaNI	GCATC	1 cut(s)	845
SfcI	CTRYAG	1 cut(s)	429
Sfr274I	CTCGAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	145
SlaI	CTCGAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	2 cut(s)	42, 675
SmoI	CTYRAG	2 cut(s)	42, 675
Sse9I	AATT	5 cut(s)	445, 451, 572, 681, 826
SsiI	CCGC	1 cut(s)	801
SspMI	CTAG	2 cut(s)	477, 645
StyD4I	CCNGG	5 cut(s)	296, 346, 376, 586, 790
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	664
TaqI	TCGA	4 cut(s)	43, 81, 238, 767
TasI	AATT	5 cut(s)	445, 451, 572, 681, 826
TatI	WGTACW	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	172, 424
Tru1I	TTAA	3 cut(s)	491, 575, 623
Tru9I	TTAA	3 cut(s)	491, 575, 623
TseI	GCWGC	3 cut(s)	47, 610, 739
TspDTI	ATGAA	4 cut(s)	381, 517, 609, 715
TspGWI	ACGGA	1 cut(s)	116
VneI	GTGCAC	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	145
XagI	CCTNNNNNAGG	1 cut(s)	323
XhoI	CTCGAG	1 cut(s)	42
XmnI	GAANNNNTTC	1 cut(s)	814
XspI	CTAG	2 cut(s)	477, 645
ZrmI	AGTACT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.