Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Reverse (-)

80341332 .. 80345434

Gene Structure 4103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG516800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTCAGGCTCGTATGCCCAGAATTTCTCGCCGGCGAGGGCGCTCTCGCCGCACCTGAGAACCCCGCCGGATGTGGACAGTCAGTACTTGACTGAGCTCTTGGCCGAGCACCAAAAGCTTGGACCTTTCGCCCAAGTCGTGCCCATATGTGGCCGCCTCTTGAATCAAGAGATATTACGAGTTTCTGGAATGATGCCCAACCAAGGGTATAGTGATTTTGACAGAATGCAACGTGGAAGCCCTAGCCCTATTGGTTCAGACTTAATGCCAAATTATAGAGGGTCAAGCATGGGGGGATGGAATGGCCGGCCTCACGATAGATTAGGTGGTCCACAAGGAATGAATATGGAGTGGCAAGTAGCACCATCAAGCCCAAGTTCCTACATTGTCAAGAGAATACTGCGGTTGGATATCCCAGTCGATAGCTTTCCAAATTTCAATTTTGTGGGCCGGCTTCTGGGTCCCAGAGGCAATTCACTGAAGCGGGTGGAAGCTTCCACAGGTTGTCGTGTGTATATAAGAGGAAAATGTTCAATAAGAGATATAGACAAGGAGGAGTCTTTGAGGGGTAGACCAGGGTATGAGCATTTGAATGATCCACTGCACATTATAATCGAGGCTGAATTACCTGCTAATATTGTCGATATGCGGTTGAGACAGGCAAAACAAATCATAGAAGAACTTCTCAAACCTATGGATGAGTCACAAGACCACTACAAGAGGGAGCAGTTGAGAGAACTAGCTATGCTAAAATCCAATTTAAGAGAAGAAAGTCCTCAACCATATGGGAGTGTCTCCCCTTTCACTTCCAGTGGGATGAAGCGTGCCAAAACTGGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

280

Amino Acids

31.43

Weight (kDa)

9.11

Isoelectric Point (pI)

59.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	23 - 71	2.6e-15	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	144 - 230	6.2e-19	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
Acc36I	ACCTGC	1 cut(s)	637
AccI	GTMKAC	1 cut(s)	571
AciI	CCGC	6 cut(s)	50, 65, 154, 403, 484, 649
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	3 cut(s)	102, 151, 304
AcsI	RAATTY	2 cut(s)	22, 433
AcuI	CTGAAG	1 cut(s)	500
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
AgsI	TTSAA	4 cut(s)	163, 439, 534, 592
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	5 cut(s)	97, 118, 426, 494, 743
AluI	AGCT	5 cut(s)	97, 118, 426, 494, 743
Alw21I	GWGCWC	2 cut(s)	99, 111
Alw26I	GTCTC	2 cut(s)	649, 799
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	5 cut(s)	102, 151, 304, 308, 448
ApoI	RAATTY	2 cut(s)	22, 433
Asp700I	GAANNNNTTC	2 cut(s)	529, 681
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	4 cut(s)	122, 329, 448, 461
AvaII	GGWCC	3 cut(s)	122, 329, 461
BaeGI	GKGCMC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	99, 111
BccI	CCATC	2 cut(s)	291, 373
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	2 cut(s)	649, 799
BfaI	CTAG	2 cut(s)	243, 740
BfoI	RGCGCY	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	637
BisI	GCNGC	2 cut(s)	50, 154
BlsI	GCNGC	2 cut(s)	51, 155
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	3 cut(s)	122, 329, 461
BmgT120I	GGNCC	4 cut(s)	122, 329, 448, 461
BmiI	GGNNCC	2 cut(s)	462, 463
BmrFI	CCNGG	1 cut(s)	576
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	202, 575
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
Bse118I	RCCGGY	3 cut(s)	31, 306, 450
Bse1I	ACTGG	3 cut(s)	416, 810, 838
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	202, 575
BseGI	GGATG	4 cut(s)	76, 302, 703, 822
BseLI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
BseMII	CTCAG	2 cut(s)	47, 84
BseNI	ACTGG	3 cut(s)	416, 810, 838
BseRI	GAGGAG	1 cut(s)	569
BseSI	GKGCMC	1 cut(s)	144
BsgI	GTGCAG	1 cut(s)	587
BshFI	GGCC	5 cut(s)	104, 153, 306, 310, 450
BsiHKAI	GWGCWC	2 cut(s)	99, 111
BsiSI	CCGG	4 cut(s)	32, 68, 307, 451
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
BsmAI	GTCTC	2 cut(s)	649, 799
BsmFI	GGGAC	1 cut(s)	447
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	5 cut(s)	104, 153, 306, 310, 450
Bsp1286I	GDGCHC	3 cut(s)	99, 111, 144
Bsp143I	GATC	1 cut(s)	595
BspACI	CCGC	6 cut(s)	50, 65, 154, 403, 484, 649
BspANI	GGCC	5 cut(s)	104, 153, 306, 310, 450
BspCNI	CTCAG	2 cut(s)	48, 85
BspLI	GGNNCC	2 cut(s)	462, 463
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	1 cut(s)	590
BsrFI	RCCGGY	3 cut(s)	31, 306, 450
BsrI	ACTGG	3 cut(s)	416, 810, 838
BssAI	RCCGGY	3 cut(s)	31, 306, 450
BssECI	CCNNGG	2 cut(s)	202, 575
BssMI	GATC	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	1 cut(s)	80
BstC8I	GCNNGC	4 cut(s)	33, 308, 452, 825
BstDEI	CTNAG	2 cut(s)	56, 93
BstF5I	GGATG	4 cut(s)	76, 302, 703, 822
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	2 cut(s)	649, 799
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 115
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstSLI	GKGCMC	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	119
BsuRI	GGCC	5 cut(s)	104, 153, 306, 310, 450
BtsCI	GGATG	4 cut(s)	76, 302, 703, 822
BtsI	GCAGTG	1 cut(s)	599
BtsIMutI	CAGTG	3 cut(s)	476, 599, 817
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	4 cut(s)	33, 308, 452, 825
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	3 cut(s)	31, 306, 450
Cfr13I	GGNCC	4 cut(s)	122, 329, 448, 461
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	1 cut(s)	289
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	56, 93
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
EaeI	YGGCCR	3 cut(s)	102, 151, 304
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	3 cut(s)	122, 329, 461
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	574
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	1 cut(s)	292
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	1 cut(s)	288
FauI	CCCGC	2 cut(s)	72, 477
FauNDI	CATATG	2 cut(s)	146, 784
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	2 cut(s)	50, 154
FokI	GGATG	4 cut(s)	83, 309, 710, 829
FriOI	GRGCYC	1 cut(s)	99
FseI	GGCCGGCC	1 cut(s)	310
Fsp4HI	GCNGC	2 cut(s)	50, 154
FspBI	CTAG	2 cut(s)	243, 740
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	2 cut(s)	50, 154
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	5 cut(s)	104, 153, 306, 310, 450
HapII	CCGG	4 cut(s)	32, 68, 307, 451
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HindIII	AAGCTT	2 cut(s)	116, 492
HinfI	GANTC	3 cut(s)	163, 557, 701
HpaII	CCGG	4 cut(s)	32, 68, 307, 451
Hpy166II	GTNNAC	3 cut(s)	76, 332, 572
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	5 cut(s)	160, 167, 186, 314, 391
Hpy8I	GTNNAC	3 cut(s)	76, 332, 572
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	2 cut(s)	229, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 115
HpyF3I	CTNAG	2 cut(s)	56, 93
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	41
KflI	GGGWCCC	1 cut(s)	461
KroI	GCCGGC	3 cut(s)	31, 306, 450
KroNI	GCCGGC	3 cut(s)	33, 308, 452
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	1 cut(s)	724
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	2 cut(s)	243, 740
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	702
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	2 cut(s)	689, 779
MhlI	GDGCHC	3 cut(s)	99, 111, 144
MluCI	AATT	7 cut(s)	22, 271, 433, 439, 472, 623, 757
MlyI	GAGTC	2 cut(s)	566, 710
MmeI	TCCRAC	1 cut(s)	387
MreI	CGCCGGCG	1 cut(s)	31
MroNI	GCCGGC	3 cut(s)	31, 306, 450
MroXI	GAANNNNTTC	2 cut(s)	529, 681
MseI	TTAA	2 cut(s)	263, 761
MslI	CAYNNNNRTG	1 cut(s)	591
MspI	CCGG	4 cut(s)	32, 68, 307, 451
MspR9I	CCNGG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	2 cut(s)	49, 115
NaeI	GCCGGC	3 cut(s)	33, 308, 452
NdeI	CATATG	2 cut(s)	146, 784
NdeII	GATC	1 cut(s)	595
NgoMIV	GCCGGC	3 cut(s)	31, 306, 450
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	2 cut(s)	462, 463
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	231
PdiI	GCCGGC	3 cut(s)	33, 308, 452
PdmI	GAANNNNTTC	2 cut(s)	529, 681
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	51, 155
PleI	GAGTC	2 cut(s)	565, 709
PpsI	GAGTC	2 cut(s)	565, 709
PpuMI	RGGWCCY	1 cut(s)	461
PsiI	TTATAA	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	462, 463
PspPI	GGNCC	4 cut(s)	122, 329, 448, 461
PspPPI	RGGWCCY	1 cut(s)	461
RigI	GGCCGGCC	1 cut(s)	310
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	591
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	263, 761
SatI	GCNGC	2 cut(s)	50, 154
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	4 cut(s)	122, 329, 448, 461
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	566, 710
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	3 cut(s)	99, 111, 144
SfaNI	GCATC	1 cut(s)	183
SgrAI	CRCCGGYG	1 cut(s)	31
SinI	GGWCC	3 cut(s)	122, 329, 461
SmiMI	CAYNNNNRTG	1 cut(s)	591
Sse9I	AATT	7 cut(s)	22, 271, 433, 439, 472, 623, 757
SsiI	CCGC	6 cut(s)	50, 65, 154, 403, 484, 649
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	2 cut(s)	243, 740
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	3 cut(s)	420, 615, 642
TasI	AATT	7 cut(s)	22, 271, 433, 439, 472, 623, 757
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	2 cut(s)	52, 156
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	263, 761
Tru9I	TTAA	2 cut(s)	263, 761
TscAI	CASTG	3 cut(s)	483, 606, 817
TseFI	GTSAC	1 cut(s)	702
Tsp45I	GTSAC	1 cut(s)	702
TspDTI	ATGAA	2 cut(s)	356, 833
TspRI	CASTG	3 cut(s)	483, 606, 817
VpaK11BI	GGWCC	3 cut(s)	122, 329, 461
XapI	RAATTY	2 cut(s)	22, 433
XmiI	GTMKAC	1 cut(s)	571
XmnI	GAANNNNTTC	2 cut(s)	529, 681
XspI	CTAG	2 cut(s)	243, 740
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.