Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Forward (+)

8084999 .. 8090426

Gene Structure 5428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG101600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCTTCTTTGTCTGTGTGCAGAGATTCTACGGGTTTCTGGAATGATGTCCAACCAAGGTTTCGGCGACTTCGACAGAATGCGACATAGAAGTCCTAGTCCAATGGCTTCTTCAAACCTTATGTCAAGTGTTACTGGGACAGGATTGGGTGGTTGGAATGGACTTCCTCAAGAGAGATTAAGTGCACCTCATGGGATGACAATGGACTGGCAAGGTGCACCTGCGAGCCCTAGTTCATACACAGTGAAGAGGATTTTACGCTTGGAAATTCCTGTAGACACCTACCCCAACTTCAATTTTGTTGGGCGACTTCTTGGACCCAGAGGTAATTCTTTGAAACGAGTTGAAGCTACTACGGGGTGTCGTGTATACATTAGAGGCAAAGGATCTATCAAGGATCCAGACAAGGAGGACAAGCTAAGGGGAAGACCAGGCTATGAACATCTGAGCGAACCACTCCACATCTTAATTGAAGCCGATTTACCTGCCAGTGTTGTTGATATAAGGCTCAGACAGGCCCAAGAAATTATCGAAGAACTGCTCAAACCAGTGGTACTTATCTCAAACATATTTTTTCTCTCTCTAAACAATATTATGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

200

Amino Acids

22.17

Weight (kDa)

8.75

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH-I_KHDC4-BBP	PF22675	95 - 182	6.9e-22	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	229
AasI	GACNNNNNNGTC	1 cut(s)	90
Acc36I	ACCTGC	2 cut(s)	229, 493
AccI	GTMKAC	2 cut(s)	276, 369
AclWI	GGATC	3 cut(s)	392, 394, 405
AcsI	RAATTY	1 cut(s)	267
AfaI	GTAC	1 cut(s)	555
AgsI	TTSAA	5 cut(s)	114, 295, 337, 347, 473
AjnI	CCWGG	1 cut(s)	430
AjuI	GAANNNNNNNTTGG	4 cut(s)	44, 76, 94, 126
AluBI	AGCT	2 cut(s)	350, 418
AluI	AGCT	2 cut(s)	350, 418
Alw21I	GWGCWC	2 cut(s)	187, 220
Alw44I	GTGCAC	2 cut(s)	183, 216
AlwI	GGATC	3 cut(s)	392, 394, 405
AoxI	GGCC	1 cut(s)	516
ApaLI	GTGCAC	2 cut(s)	183, 216
ApoI	RAATTY	1 cut(s)	267
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspS9I	GGNCC	2 cut(s)	317, 517
AvaII	GGWCC	1 cut(s)	317
BaeGI	GKGCMC	2 cut(s)	187, 220
BamHI	GGATCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	230
BarI	GAAGNNNNNNTAC	2 cut(s)	465, 497
BbsI	GAAGAC	1 cut(s)	433
Bbv12I	GWGCWC	2 cut(s)	187, 220
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BciT130I	CCWGG	1 cut(s)	432
BfaI	CTAG	2 cut(s)	96, 231
BfmI	CTRYAG	1 cut(s)	273
BfuAI	ACCTGC	2 cut(s)	229, 493
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	317, 517
BmiI	GGNNCC	2 cut(s)	319, 399
BmrFI	CCNGG	1 cut(s)	432
BmrI	ACTGGG	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	419
BpuEI	CTTGAG	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	55
Bse1I	ACTGG	4 cut(s)	139, 212, 489, 548
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	201
BseMII	CTCAG	2 cut(s)	437, 523
BseNI	ACTGG	4 cut(s)	139, 212, 489, 548
BseSI	GKGCMC	2 cut(s)	187, 220
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	518
BsiHKAI	GWGCWC	2 cut(s)	187, 220
BslFI	GGGAC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	518
Bsp1286I	GDGCHC	3 cut(s)	187, 220, 230
Bsp143I	GATC	2 cut(s)	386, 397
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	2 cut(s)	438, 522
BspLI	GGNNCC	2 cut(s)	319, 399
BspMI	ACCTGC	2 cut(s)	229, 493
BspPI	GGATC	3 cut(s)	392, 394, 405
BsrI	ACTGG	4 cut(s)	139, 212, 489, 548
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	386, 397
BssNAI	GTATAC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	55
Bst1107I	GTATAC	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	3 cut(s)	419, 446, 509
BstF5I	GGATG	1 cut(s)	201
BstKTI	GATC	2 cut(s)	389, 400
BstMBI	GATC	2 cut(s)	386, 397
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	1 cut(s)	273
BstSLI	GKGCMC	2 cut(s)	187, 220
BstV2I	GAAGAC	1 cut(s)	433
BstX2I	RGATCY	2 cut(s)	386, 397
BstYI	RGATCY	2 cut(s)	386, 397
BstZ17I	GTATAC	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	3 cut(s)	249, 496, 555
BveI	ACCTGC	2 cut(s)	229, 493
Cac8I	GCNNGC	1 cut(s)	226
Cfr13I	GGNCC	2 cut(s)	317, 517
Csp6I	GTAC	1 cut(s)	554
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	8 cut(s)	107, 228, 350, 418, 435, 476, 508, 518
CviKI_1	RGCY	8 cut(s)	107, 228, 350, 418, 435, 476, 508, 518
CviQI	GTAC	1 cut(s)	554
DdeI	CTNAG	3 cut(s)	419, 446, 509
DpnI	GATC	2 cut(s)	388, 399
DpnII	GATC	2 cut(s)	386, 397
DrdI	GACNNNNNNGTC	1 cut(s)	90
DseDI	GACNNNNNNGTC	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	1 cut(s)	194
FaiI	YATR	9 cut(s)	87, 122, 192, 238, 370, 438, 503, 569, 596
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	190
FblI	GTMKAC	2 cut(s)	276, 369
FokI	GGATG	1 cut(s)	208
FriOI	GRGCYC	1 cut(s)	230
FspBI	CTAG	2 cut(s)	96, 231
HaeIII	GGCC	1 cut(s)	518
Hin1II	CATG	1 cut(s)	194
HinfI	GANTC	1 cut(s)	25
Hpy166II	GTNNAC	4 cut(s)	185, 218, 277, 370
Hpy188I	TCNGA	2 cut(s)	447, 512
Hpy188III	TCNNGA	3 cut(s)	39, 170, 401
Hpy8I	GTNNAC	4 cut(s)	185, 218, 277, 370
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	20, 185, 218
HpyF3I	CTNAG	3 cut(s)	419, 446, 509
Hsp92II	CATG	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	386, 397
MaeI	CTAG	2 cut(s)	96, 231
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	388, 399
MboI	GATC	2 cut(s)	386, 397
MboII	GAAGA	4 cut(s)	102, 259, 438, 545
MflI	RGATCY	2 cut(s)	386, 397
MhlI	GDGCHC	3 cut(s)	187, 220, 230
MluCI	AATT	5 cut(s)	267, 295, 328, 468, 525
MmeI	TCCRAC	2 cut(s)	75, 134
MnlI	CCTC	6 cut(s)	177, 198, 243, 317, 371, 403
MseI	TTAA	2 cut(s)	179, 467
MspR9I	CCNGG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	432
NdeII	GATC	2 cut(s)	386, 397
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	2 cut(s)	319, 399
PaqCI	CACCTGC	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	2 cut(s)	319, 399
PspPI	GGNCC	2 cut(s)	317, 517
PsuI	RGATCY	2 cut(s)	386, 397
RsaI	GTAC	1 cut(s)	555
RsaNI	GTAC	1 cut(s)	554
SaqAI	TTAA	2 cut(s)	179, 467
Sau3AI	GATC	2 cut(s)	386, 397
Sau96I	GGNCC	2 cut(s)	317, 517
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	3 cut(s)	187, 220, 230
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	5 cut(s)	267, 295, 328, 468, 525
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	2 cut(s)	96, 231
StyD4I	CCNGG	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	72, 531
TasI	AATT	5 cut(s)	267, 295, 328, 468, 525
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	2 cut(s)	179, 467
Tru9I	TTAA	2 cut(s)	179, 467
TscAI	CASTG	3 cut(s)	249, 496, 555
TspDTI	ATGAA	2 cut(s)	225, 453
TspRI	CASTG	3 cut(s)	249, 496, 555
VneI	GTGCAC	2 cut(s)	183, 216
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	1 cut(s)	267
XmiI	GTMKAC	2 cut(s)	276, 369
XspI	CTAG	2 cut(s)	96, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.