Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Reverse (-)

27503579 .. 27508101

Gene Structure 4523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1193400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCAGGCTTGTATAATCCCAACTTCTCACCTGCCAGAGCTGCTTCTCCTCAGATTAGAAGCACCCCAGATGTTGACAGTCAGTACTTGTCGGAGTTGTTGGCAGAGCATCAAAAGCTTGGACCGTTCATGCAAGTTCTTCCGATATGCAGCCGCCTCTTGAATCAAGAGATTTTACGGGTTTCTGGAATGATGTCCAACCAAGGTTTTGGCGACTTTGACAGAATGCGACATAGAAGCCCTAGTCCAATGGCTTCTTCAAATCTTATATCAAATGTGACTGGGACGGGAATGGGTGGCTGGAATGGACTTCCTCAAGAGAGATTAGGTGGACCCCATGGGATGACGATGGACTGGCAAGGTGCACCCGCGAGCCCTAGTTCATACACTGTGAAGAGGATTTTACGTTTAGAAATCCCTGTAGATACTTACCCCAATTTCAATTTTGTTGGGCGGCTTCTTGGACCGAGAGGTAATTCTCTGAAACGGGTTGAAGCTACGACAGGTTGTCGTGTGTACATTAGGGGAAAGGGATCTATTAAGGACCCAGACAAGGAGGAGAAGCTCAGGGGAAGGCCAGGCTATGAGCACCTGAACGAACCACTCCACATCTTAATTGAAGCCGATTTACCTGCCAATGTGGTTGACTTAAGGTTGAGACAGGCGCAAGAAATCATAGAAGAATTGCTCAAACCTGTGGATGAATCACAAGATTTTATTAAGAGGCAGCAGTTGCGTGAGTTGGCTCTGCTAAACTCAAATTTCAGAGAAGAAAGTCCTGGACCAAGTGGTAGTGTATCTCCTTTCAATTCAAGCGGAATGAAGCGTGCAAAAACTGGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

282

Amino Acids

31.2

Weight (kDa)

9.27

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	23 - 72	3.2e-16	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	144 - 231	4.9e-22	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	2 cut(s)	40, 640
AccII	CGCG	1 cut(s)	371
AciI	CCGC	4 cut(s)	154, 369, 454, 816
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	1 cut(s)	838
AcsI	RAATTY	1 cut(s)	760
AfaI	GTAC	2 cut(s)	86, 518
AfiI	CCNNNNNNNGG	1 cut(s)	553
AflII	CTTAAG	1 cut(s)	649
AgsI	TTSAA	7 cut(s)	163, 261, 442, 494, 620, 808, 813
AhdI	GACNNNNNGTC	1 cut(s)	507
AjnI	CCWGG	2 cut(s)	577, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	4 cut(s)	41, 118, 497, 565
AluI	AGCT	4 cut(s)	41, 118, 497, 565
Alw21I	GWGCWC	2 cut(s)	367, 591
Alw26I	GTCTC	1 cut(s)	652
Alw44I	GTGCAC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	541
AoxI	GGCC	2 cut(s)	575, 838
ApaLI	GTGCAC	1 cut(s)	363
ApeKI	GCWGC	3 cut(s)	41, 150, 727
ApoI	RAATTY	1 cut(s)	760
AspLEI	GCGC	1 cut(s)	667
AspS9I	GGNCC	5 cut(s)	122, 332, 464, 544, 782
AsuHPI	GGTGA	1 cut(s)	21
AvaII	GGWCC	5 cut(s)	122, 332, 464, 544, 782
BaeGI	GKGCMC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	377
BarI	GAAGNNNNNNTAC	2 cut(s)	612, 644
Bbv12I	GWGCWC	2 cut(s)	367, 591
BbvI	GCAGC	3 cut(s)	28, 162, 739
BccI	CCATC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	2 cut(s)	579, 780
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	2 cut(s)	243, 378
BfmI	CTRYAG	1 cut(s)	420
BfrI	CTTAAG	1 cut(s)	649
BfuAI	ACCTGC	2 cut(s)	40, 640
BisI	GCNGC	5 cut(s)	42, 151, 154, 455, 728
BlsI	GCNGC	5 cut(s)	43, 152, 155, 456, 729
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	579, 780
Bme18I	GGWCC	5 cut(s)	122, 332, 464, 544, 782
BmeRI	GACNNNNNGTC	1 cut(s)	507
BmgT120I	GGNCC	5 cut(s)	122, 332, 464, 544, 782
BmiI	GGNNCC	2 cut(s)	334, 546
BmrFI	CCNGG	2 cut(s)	579, 780
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	202, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse1I	ACTGG	3 cut(s)	286, 359, 841
BseBI	CCWGG	2 cut(s)	579, 780
BseDI	CCNNGG	2 cut(s)	202, 337
BseGI	GGATG	2 cut(s)	348, 706
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMII	CTCAG	2 cut(s)	65, 580
BseNI	ACTGG	3 cut(s)	286, 359, 841
BseRI	GAGGAG	2 cut(s)	39, 572
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	28, 162, 739
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	2 cut(s)	577, 840
BsiHKAI	GWGCWC	2 cut(s)	367, 591
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	1 cut(s)	652
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	577, 840
Bsp1286I	GDGCHC	3 cut(s)	367, 377, 591
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	1 cut(s)	533
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	4 cut(s)	154, 369, 454, 816
BspANI	GGCC	2 cut(s)	577, 840
BspCNI	CTCAG	2 cut(s)	64, 579
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	2 cut(s)	334, 546
BspMI	ACCTGC	2 cut(s)	40, 640
BspPI	GGATC	1 cut(s)	541
BspTI	CTTAAG	1 cut(s)	649
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	3 cut(s)	286, 359, 841
BssECI	CCNNGG	2 cut(s)	202, 337
BssMI	GATC	1 cut(s)	533
BssT1I	CCWWGG	2 cut(s)	202, 337
Bst2UI	CCWGG	2 cut(s)	579, 780
Bst4CI	ACNGT	3 cut(s)	80, 126, 391
Bst6I	CTCTTC	1 cut(s)	389
BstAFI	CTTAAG	1 cut(s)	649
BstAPI	GCANNNNNTGC	1 cut(s)	733
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	373, 828
BstDEI	CTNAG	2 cut(s)	51, 566
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	2 cut(s)	348, 706
BstFNI	CGCG	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	1 cut(s)	536
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	1 cut(s)	533
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 115, 733
BstNI	CCWGG	2 cut(s)	579, 780
BstSCI	CCNGG	2 cut(s)	577, 778
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	367
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	3 cut(s)	28, 162, 739
BstX2I	RGATCY	1 cut(s)	533
BstXI	CCANNNNNNTGG	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	2 cut(s)	577, 840
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	348, 706
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	2 cut(s)	40, 640
Cac8I	GCNNGC	2 cut(s)	373, 828
CfoI	GCGC	1 cut(s)	667
Cfr13I	GGNCC	5 cut(s)	122, 332, 464, 544, 782
Csp6I	GTAC	2 cut(s)	85, 517
CviAII	CATG	2 cut(s)	130, 338
CviQI	GTAC	2 cut(s)	85, 517
DdeI	CTNAG	2 cut(s)	51, 566
DpnI	GATC	1 cut(s)	535
DpnII	GATC	1 cut(s)	533
DriI	GACNNNNNGTC	1 cut(s)	507
EaeI	YGGCCR	1 cut(s)	838
Eam1104I	CTCTTC	1 cut(s)	389
Eam1105I	GACNNNNNGTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	389
Eco130I	CCWWGG	2 cut(s)	202, 337
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	5 cut(s)	122, 332, 464, 544, 782
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	577, 778
EcoT14I	CCWWGG	2 cut(s)	202, 337
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	2 cut(s)	202, 337
FaeI	CATG	2 cut(s)	133, 341
FaiI	YATR	9 cut(s)	15, 131, 148, 234, 269, 339, 385, 585, 677
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	2 cut(s)	129, 337
FauI	CCCGC	1 cut(s)	376
Fnu4HI	GCNGC	5 cut(s)	42, 151, 154, 455, 728
FokI	GGATG	2 cut(s)	355, 713
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	5 cut(s)	42, 151, 154, 455, 728
FspBI	CTAG	2 cut(s)	243, 378
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	5 cut(s)	42, 151, 154, 455, 728
HaeIII	GGCC	2 cut(s)	577, 840
HhaI	GCGC	1 cut(s)	667
Hin1II	CATG	2 cut(s)	133, 341
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HincII	GTYRAC	2 cut(s)	76, 646
HindII	GTYRAC	2 cut(s)	76, 646
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	2 cut(s)	163, 704
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	5 cut(s)	76, 332, 365, 517, 646
Hpy188I	TCNGA	5 cut(s)	54, 94, 144, 483, 767
Hpy188III	TCNNGA	4 cut(s)	160, 167, 186, 317
Hpy8I	GTNNAC	5 cut(s)	76, 332, 365, 517, 646
HpyAV	CCTTC	1 cut(s)	567
HpyCH4III	ACNGT	3 cut(s)	80, 126, 391
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	4 cut(s)	133, 150, 365, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 115, 733
HpyF3I	CTNAG	2 cut(s)	51, 566
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	2 cut(s)	133, 341
HspAI	GCGC	1 cut(s)	665
Kzo9I	GATC	1 cut(s)	533
Lsp1109I	GCAGC	3 cut(s)	28, 162, 739
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	243, 378
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	535
MboI	GATC	1 cut(s)	533
MboII	GAAGA	5 cut(s)	131, 249, 406, 692, 782
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	3 cut(s)	367, 377, 591
MluCI	AATT	7 cut(s)	436, 442, 475, 615, 683, 760, 808
MmeI	TCCRAC	2 cut(s)	72, 222
MnlI	CCTC	7 cut(s)	60, 167, 324, 390, 464, 550, 717
MseI	TTAA	4 cut(s)	540, 614, 650, 720
MspCI	CTTAAG	1 cut(s)	649
MspR9I	CCNGG	2 cut(s)	579, 780
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	2 cut(s)	579, 780
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	41, 115, 733
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	1 cut(s)	533
NlaIII	CATG	2 cut(s)	133, 341
NlaIV	GGNNCC	2 cut(s)	334, 546
NmuCI	GTSAC	1 cut(s)	277
PaqCI	CACCTGC	1 cut(s)	40
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	163, 704
PfoI	TCCNGGA	1 cut(s)	778
PkrI	GCNGC	5 cut(s)	43, 152, 155, 456, 729
PpuMI	RGGWCCY	1 cut(s)	544
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	2 cut(s)	577, 778
PspGI	CCWGG	2 cut(s)	577, 778
PspN4I	GGNNCC	2 cut(s)	334, 546
PspPI	GGNCC	5 cut(s)	122, 332, 464, 544, 782
PspPPI	RGGWCCY	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	2 cut(s)	86, 518
RsaNI	GTAC	2 cut(s)	85, 517
SaqAI	TTAA	4 cut(s)	540, 614, 650, 720
SatI	GCNGC	5 cut(s)	42, 151, 154, 455, 728
Sau3AI	GATC	1 cut(s)	533
Sau96I	GGNCC	5 cut(s)	122, 332, 464, 544, 782
ScaI	AGTACT	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	579, 780
SduI	GDGCHC	3 cut(s)	367, 377, 591
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	5 cut(s)	122, 332, 464, 544, 782
SmlI	CTYRAG	2 cut(s)	315, 649
SmoI	CTYRAG	2 cut(s)	315, 649
Sse9I	AATT	7 cut(s)	436, 442, 475, 615, 683, 760, 808
SsiI	CCGC	4 cut(s)	154, 369, 454, 816
SspMI	CTAG	2 cut(s)	243, 378
StyD4I	CCNGG	2 cut(s)	577, 778
StyI	CCWWGG	2 cut(s)	202, 337
TaaI	ACNGT	3 cut(s)	80, 126, 391
TaiI	ACGT	1 cut(s)	409
TaqII	GACCGA	1 cut(s)	481
TasI	AATT	7 cut(s)	436, 442, 475, 615, 683, 760, 808
TatI	WGTACW	2 cut(s)	84, 516
TauI	GCSGC	2 cut(s)	156, 457
TfiI	GAWTC	2 cut(s)	163, 704
Tru1I	TTAA	4 cut(s)	540, 614, 650, 720
Tru9I	TTAA	4 cut(s)	540, 614, 650, 720
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	3 cut(s)	41, 150, 727
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	4 cut(s)	118, 372, 717, 836
TspRI	CASTG	1 cut(s)	394
Vha464I	CTTAAG	1 cut(s)	649
VneI	GTGCAC	1 cut(s)	363
VpaK11BI	GGWCC	5 cut(s)	122, 332, 464, 544, 782
XapI	RAATTY	1 cut(s)	760
XspI	CTAG	2 cut(s)	243, 378
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.