Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Forward (+)

2617707 .. 2620670

Gene Structure 2964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTCTGGTCTGTATAATTATAATAACTTCTCACCTTCTAGAGCCGCTTCTCCTCAGATTAGAACCCCTTCCTCCGATGTTGACAGTCAATACATATCTCAGTTGTTAGCAGAGCATCAAAAGCTTGGACCTTTCATGCAAGTCTTACCCATTTGTAGCCGACTCTTAAATCAAGAAATTTTCCGGATCACCGGAATGATGCCCAACCAAGGATTTACCGATTTTGATAGGTTACGGCATCGAAGTCCTAGTCCAATGGCTTCACCAAATCTTATGTCTAATGTTTCCGGTGGTGGATTAGGTGGTTGGAATGGTCTTCCACCAGAGAGAATTGGTGGTCCTCATGGAATGGCAATGGAGTGGCAAGGTGCGCCAGCTAGCCCAAGTTCATACCCAGTGAAGCGTATTTTGCGTTTAGATCTTCCAGTTGATACCTATCCGAATTTCAATTTTGTTGGAAGGCTTCTGGGTCCTAGAGGGAATTCATTAAAGCGTGTGGAAGCAACTACGGGTTGCCGTGTGTATATTAGAGGGAAAGGATCAATTAAGGATCCTGAAAAAGAAGAGAAACTGAAAGGGAAGCCTGGCTATGAGCATCTCAATGAGCAGTTGCATATCCTCATTGAGGCTGATCTTCCAATTGATATTGTGGATATAAAGCTGCGGCAGGCCCAAGAAATAATCGAGGAGTTGGTCAAGCCTGTGGATGAGTCGCAGGATTACATCAAGAGGCAGCAGTTGCGAGAGCTAGCGTTGCTGAATTCAAACTTGAGAGAAAACAGCCCAGGACCAAGCGGTAGTGTCTCTCCTTTCAATTCAAATGCAATGAAACGCCCAAAAACAGGGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

283

Amino Acids

31.5

Weight (kDa)

9.3

Isoelectric Point (pI)

59.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH-I_KHDC4-BBP	PF22675	101 - 188	1.5e-20	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	183
AciI	CCGC	3 cut(s)	45, 664, 795
AclWI	GGATC	4 cut(s)	194, 545, 547, 558
AcsI	RAATTY	4 cut(s)	177, 442, 481, 760
AfiI	CCNNNNNNNGG	3 cut(s)	209, 625, 842
AgsI	TTSAA	4 cut(s)	448, 765, 814, 819
AjnI	CCWGG	2 cut(s)	583, 784
AluBI	AGCT	4 cut(s)	124, 377, 661, 748
AluI	AGCT	4 cut(s)	124, 377, 661, 748
Alw26I	GTCTC	1 cut(s)	808
AlwI	GGATC	4 cut(s)	194, 545, 547, 558
Aor13HI	TCCGGA	1 cut(s)	183
AoxI	GGCC	1 cut(s)	669
ApeKI	GCWGC	2 cut(s)	661, 733
ApoI	RAATTY	4 cut(s)	177, 442, 481, 760
ArsI	GACNNNNNNTTYG	4 cut(s)	235, 260, 267, 292
Asp700I	GAANNNNTTC	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	5 cut(s)	128, 338, 470, 670, 788
AsuHPI	GGTGA	3 cut(s)	24, 181, 255
AsuNHI	GCTAGC	2 cut(s)	377, 748
AvaII	GGWCC	4 cut(s)	128, 338, 470, 788
BamHI	GGATCC	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	648, 745
BceAI	ACGGC	2 cut(s)	251, 501
BciT130I	CCWGG	2 cut(s)	585, 786
BcoDI	GTCTC	1 cut(s)	808
BfaI	CTAG	5 cut(s)	39, 249, 378, 474, 749
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	4 cut(s)	45, 662, 665, 734
BlsI	GCNGC	4 cut(s)	46, 663, 666, 735
Bme1390I	CCNGG	2 cut(s)	585, 786
Bme18I	GGWCC	4 cut(s)	128, 338, 470, 788
BmgT120I	GGNCC	5 cut(s)	128, 338, 470, 670, 788
BmiI	GGNNCC	2 cut(s)	471, 552
BmrFI	CCNGG	2 cut(s)	585, 786
BmrI	ACTGGG	1 cut(s)	389
BmsI	GCATC	4 cut(s)	124, 189, 247, 604
BmtI	GCTAGC	2 cut(s)	381, 752
BmuI	ACTGGG	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	790
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	208, 784
BsaWI	WCCGGW	3 cut(s)	183, 191, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 625, 842
Bse1I	ACTGG	2 cut(s)	395, 425
Bse3DI	GCAATG	2 cut(s)	360, 831
Bse8I	GATNNNNATC	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	585, 786
BseDI	CCNNGG	2 cut(s)	208, 784
BseGI	GGATG	1 cut(s)	712
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	3 cut(s)	209, 625, 842
BseMI	GCAATG	2 cut(s)	360, 831
BseMII	CTCAG	2 cut(s)	68, 113
BseNI	ACTGG	2 cut(s)	395, 425
BseRI	GAGGAG	2 cut(s)	42, 701
BseXI	GCAGC	2 cut(s)	648, 745
BshFI	GGCC	1 cut(s)	671
BsiSI	CCGG	3 cut(s)	184, 192, 288
BslI	CCNNNNNNNGG	3 cut(s)	209, 625, 842
BsmAI	GTCTC	1 cut(s)	808
BsnI	GGCC	1 cut(s)	671
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	5 cut(s)	186, 418, 539, 550, 631
BspACI	CCGC	3 cut(s)	45, 664, 795
BspANI	GGCC	1 cut(s)	671
BspCNI	CTCAG	2 cut(s)	67, 112
BspEI	TCCGGA	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	471, 552
BspOI	GCTAGC	2 cut(s)	381, 752
BspPI	GGATC	4 cut(s)	194, 545, 547, 558
BsrDI	GCAATG	2 cut(s)	360, 831
BsrI	ACTGG	2 cut(s)	395, 425
BssECI	CCNNGG	2 cut(s)	208, 784
BssMI	GATC	5 cut(s)	186, 418, 539, 550, 631
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	2 cut(s)	585, 786
Bst4CI	ACNGT	1 cut(s)	86
Bst6I	CTCTTC	1 cut(s)	558
BstAPI	GCANNNNNTGC	1 cut(s)	739
BstC8I	GCNNGC	4 cut(s)	375, 379, 669, 750
BstDEI	CTNAG	2 cut(s)	54, 99
BstENI	CCTNNNNNAGG	1 cut(s)	623
BstF5I	GGATG	1 cut(s)	712
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	5 cut(s)	189, 421, 542, 553, 634
BstMAI	GTCTC	1 cut(s)	808
BstMBI	GATC	5 cut(s)	186, 418, 539, 550, 631
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 370, 409, 739, 754
BstNI	CCWGG	2 cut(s)	585, 786
BstSCI	CCNGG	2 cut(s)	583, 784
BstV1I	GCAGC	2 cut(s)	648, 745
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	2 cut(s)	418, 550
BstYI	RGATCY	2 cut(s)	418, 550
BsuRI	GGCC	1 cut(s)	671
BtsCI	GGATG	1 cut(s)	712
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	4 cut(s)	375, 379, 669, 750
CfoI	GCGC	1 cut(s)	373
Cfr13I	GGNCC	5 cut(s)	128, 338, 470, 670, 788
CviAII	CATG	2 cut(s)	136, 344
DdeI	CTNAG	2 cut(s)	54, 99
DpnI	GATC	5 cut(s)	188, 420, 541, 552, 633
DpnII	GATC	5 cut(s)	186, 418, 539, 550, 631
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	208
Eco47I	GGWCC	4 cut(s)	128, 338, 470, 788
EcoNI	CCTNNNNNAGG	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	470
EcoRI	GAATTC	2 cut(s)	481, 760
EcoRII	CCWGG	2 cut(s)	583, 784
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	2 cut(s)	139, 347
FatI	CATG	2 cut(s)	135, 343
Fnu4HI	GCNGC	4 cut(s)	45, 662, 665, 734
FokI	GGATG	1 cut(s)	719
Fsp4HI	GCNGC	4 cut(s)	45, 662, 665, 734
FspBI	CTAG	5 cut(s)	39, 249, 378, 474, 749
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	4 cut(s)	45, 662, 665, 734
HaeIII	GGCC	1 cut(s)	671
HapII	CCGG	3 cut(s)	184, 192, 288
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	139, 347
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	2 cut(s)	162, 710
HpaII	CCGG	3 cut(s)	184, 192, 288
HphI	GGTGA	3 cut(s)	24, 181, 255
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	57, 76, 441
Hpy188III	TCNNGA	5 cut(s)	39, 173, 184, 554, 727
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	3 cut(s)	45, 78, 453
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	3 cut(s)	139, 613, 824
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 370, 409, 739, 754
HpyF3I	CTNAG	2 cut(s)	54, 99
Hsp92II	CATG	2 cut(s)	139, 347
HspAI	GCGC	1 cut(s)	371
Kpn2I	TCCGGA	1 cut(s)	183
Kzo9I	GATC	5 cut(s)	186, 418, 539, 550, 631
Lsp1109I	GCAGC	2 cut(s)	648, 745
LweI	GCATC	4 cut(s)	124, 189, 247, 604
MaeI	CTAG	5 cut(s)	39, 249, 378, 474, 749
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	5 cut(s)	188, 420, 541, 552, 633
MboI	GATC	5 cut(s)	186, 418, 539, 550, 631
MboII	GAAGA	4 cut(s)	308, 413, 575, 626
MfeI	CAATTG	1 cut(s)	639
MflI	RGATCY	2 cut(s)	418, 550
MlyI	GAGTC	2 cut(s)	156, 719
MmeI	TCCRAC	2 cut(s)	287, 436
MnlI	CCTC	9 cut(s)	63, 82, 351, 470, 524, 619, 629, 679, 723
MroI	TCCGGA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	67
MseI	TTAA	4 cut(s)	167, 488, 546, 850
MslI	CAYNNNNRTG	2 cut(s)	194, 600
MspI	CCGG	3 cut(s)	184, 192, 288
MspR9I	CCNGG	2 cut(s)	585, 786
MunI	CAATTG	1 cut(s)	639
MvaI	CCWGG	2 cut(s)	585, 786
MwoI	GCNNNNNNNGC	5 cut(s)	121, 370, 409, 739, 754
NdeII	GATC	5 cut(s)	186, 418, 539, 550, 631
NheI	GCTAGC	2 cut(s)	377, 748
NlaIII	CATG	2 cut(s)	139, 347
NlaIV	GGNNCC	2 cut(s)	471, 552
PdmI	GAANNNNTTC	1 cut(s)	67
PkrI	GCNGC	4 cut(s)	46, 663, 666, 735
PleI	GAGTC	2 cut(s)	156, 718
PpsI	GAGTC	2 cut(s)	156, 718
PpuMI	RGGWCCY	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	21
Psp5II	RGGWCCY	1 cut(s)	470
Psp6I	CCWGG	2 cut(s)	583, 784
PspGI	CCWGG	2 cut(s)	583, 784
PspN4I	GGNNCC	2 cut(s)	471, 552
PspPI	GGNCC	5 cut(s)	128, 338, 470, 670, 788
PspPPI	RGGWCCY	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	418, 550
RseI	CAYNNNNRTG	2 cut(s)	194, 600
SaqAI	TTAA	4 cut(s)	167, 488, 546, 850
SatI	GCNGC	4 cut(s)	45, 662, 665, 734
Sau3AI	GATC	5 cut(s)	186, 418, 539, 550, 631
Sau96I	GGNCC	5 cut(s)	128, 338, 470, 670, 788
SchI	GAGTC	2 cut(s)	156, 719
ScrFI	CCNGG	2 cut(s)	585, 786
SfaNI	GCATC	4 cut(s)	124, 189, 247, 604
SinI	GGWCC	4 cut(s)	128, 338, 470, 788
SmiMI	CAYNNNNRTG	2 cut(s)	194, 600
SmlI	CTYRAG	1 cut(s)	769
SmoI	CTYRAG	1 cut(s)	769
SsiI	CCGC	3 cut(s)	45, 664, 795
SspMI	CTAG	5 cut(s)	39, 249, 378, 474, 749
StyD4I	CCNGG	2 cut(s)	583, 784
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	241, 684
TauI	GCSGC	2 cut(s)	47, 667
Tru1I	TTAA	4 cut(s)	167, 488, 546, 850
Tru9I	TTAA	4 cut(s)	167, 488, 546, 850
TscAI	CASTG	1 cut(s)	402
TseI	GCWGC	2 cut(s)	661, 733
TspDTI	ATGAA	4 cut(s)	124, 378, 474, 842
TspRI	CASTG	1 cut(s)	402
VpaK11BI	GGWCC	4 cut(s)	128, 338, 470, 788
XagI	CCTNNNNNAGG	1 cut(s)	623
XapI	RAATTY	4 cut(s)	177, 442, 481, 760
XbaI	TCTAGA	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	67
XspI	CTAG	5 cut(s)	39, 249, 378, 474, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.