Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Forward (+)

5606545 .. 5611427

Gene Structure 4883 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09430.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCAGGGTTGTATAATCCCAACTTCTCTCCTGCCAGAGCTGCCTCTCCTCAGATTAGAACCACTCCAGATGTTGACAGTCAGTACTTGTCAGAGCTGTTAGCTGAGCATCAAAAGCTTGGACCTTTCATGCAAGTGCTTCCGATATGCAGCCGACTTTTGAATCAAGAGATTTTACGGGTTTCTGGAATGATGTCCAACCAAGGTTTCGGTGACTTCGATAGAATGCGGCATAGAAGTCCTAGTCCAATGGCTTCTTCAAACCTTATATCAAGTGTTACTGGATCAGGATTGGGTGGTTGGAATGGAATTCCTCAAGAGAGATTAAGTGCACCTCATGGGATGACAATGGACTGGCAAGGTGGTGCACCTGCGAGCCCTAGTTCATACACAGTGAAGAGGATTTTACGCTTGGAAATTCCTGTAGACACTTACCCCAACTTCAATTTTGTTGGGCGACTTCTTGGACCCAGAGGTAATTCTCTGAAACGGGTTGAAGCTACTACAGGCTGTCGTGTATACATCAGAGGCAAAGGATCTATCAAGGATCCAGACAAGGAGGACAAGCTAAGGGGAAGACCAGGCTATGAACATCTGAGCGAACCCCTGCACATCTTGATTGAAGCCGATTTACCTGCCAGTGTTGTTGATATAAGGCTCAGACAGGCTCAAGAAATTATTGAAGAACTGCTCAAACCTGTGGACGAGTCGCAAGATTATATAAAGAGGCAGCAATTGCGGGAGTTGGCTTTGATAAATTCAAATTTCAGAGAAGAAAGTCCTGGGCCAAGTGGCAGTGTATCTCCTTTCAATTCAAGCGGAATGAAACGTGCCAAAACAGGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

283

Amino Acids

31.2

Weight (kDa)

9.25

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	23 - 72	3.2e-16	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	146 - 233	1.5e-21	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	379
Acc36I	ACCTGC	2 cut(s)	379, 643
AccI	GTMKAC	2 cut(s)	426, 519
AciI	CCGC	3 cut(s)	229, 739, 819
AclWI	GGATC	4 cut(s)	292, 542, 544, 555
AcsI	RAATTY	4 cut(s)	309, 417, 757, 763
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	9 cut(s)	163, 261, 445, 497, 623, 683, 762, 811, 816
AjnI	CCWGG	2 cut(s)	580, 781
AjuI	GAANNNNNNNTTGG	4 cut(s)	191, 223, 241, 273
AluBI	AGCT	6 cut(s)	41, 97, 104, 118, 500, 568
AluI	AGCT	6 cut(s)	41, 97, 104, 118, 500, 568
Alw21I	GWGCWC	2 cut(s)	334, 370
Alw44I	GTGCAC	2 cut(s)	330, 366
AlwI	GGATC	4 cut(s)	292, 542, 544, 555
AoxI	GGCC	1 cut(s)	785
ApaLI	GTGCAC	2 cut(s)	330, 366
ApeKI	GCWGC	3 cut(s)	41, 150, 730
ApoI	RAATTY	4 cut(s)	309, 417, 757, 763
AspS9I	GGNCC	3 cut(s)	122, 467, 785
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	122, 467
BaeGI	GKGCMC	2 cut(s)	334, 370
BamHI	GGATCC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	615, 647
BbsI	GAAGAC	1 cut(s)	583
Bbv12I	GWGCWC	2 cut(s)	334, 370
BbvI	GCAGC	3 cut(s)	28, 162, 742
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	2 cut(s)	582, 783
BfaI	CTAG	2 cut(s)	243, 381
BfmI	CTRYAG	2 cut(s)	423, 504
BfuAI	ACCTGC	2 cut(s)	379, 643
BisI	GCNGC	4 cut(s)	42, 151, 230, 731
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	4 cut(s)	43, 152, 231, 732
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	582, 783
Bme18I	GGWCC	2 cut(s)	122, 467
BmgT120I	GGNCC	3 cut(s)	122, 467, 785
BmiI	GGNNCC	2 cut(s)	469, 549
BmrFI	CCNGG	2 cut(s)	582, 783
BmsI	GCATC	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	583
BpmI	CTGGAG	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	569
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	2 cut(s)	300, 654
BsaJI	CCNNGG	2 cut(s)	202, 782
Bse1I	ACTGG	3 cut(s)	286, 359, 639
BseBI	CCWGG	2 cut(s)	582, 783
BseDI	CCNNGG	2 cut(s)	202, 782
BseGI	GGATG	1 cut(s)	348
BseMII	CTCAG	4 cut(s)	65, 96, 587, 673
BseNI	ACTGG	3 cut(s)	286, 359, 639
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	2 cut(s)	334, 370
BseXI	GCAGC	3 cut(s)	28, 162, 742
BsgI	GTGCAG	1 cut(s)	593
BshFI	GGCC	1 cut(s)	787
BsiHKAI	GWGCWC	2 cut(s)	334, 370
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	787
Bsp1286I	GDGCHC	3 cut(s)	334, 370, 380
Bsp143I	GATC	3 cut(s)	284, 536, 547
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	3 cut(s)	229, 739, 819
BspANI	GGCC	1 cut(s)	787
BspCNI	CTCAG	4 cut(s)	64, 97, 588, 672
BspLI	GGNNCC	2 cut(s)	469, 549
BspMI	ACCTGC	2 cut(s)	379, 643
BspPI	GGATC	4 cut(s)	292, 542, 544, 555
BsrI	ACTGG	3 cut(s)	286, 359, 639
BssECI	CCNNGG	2 cut(s)	202, 782
BssMI	GATC	3 cut(s)	284, 536, 547
BssNAI	GTATAC	1 cut(s)	520
BssT1I	CCWWGG	1 cut(s)	202
Bst1107I	GTATAC	1 cut(s)	520
Bst2UI	CCWGG	2 cut(s)	582, 783
Bst4CI	ACNGT	2 cut(s)	80, 394
Bst6I	CTCTTC	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	736
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	5 cut(s)	51, 105, 569, 596, 659
BstF5I	GGATG	1 cut(s)	348
BstKTI	GATC	3 cut(s)	287, 539, 550
BstMBI	GATC	3 cut(s)	284, 536, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 115, 736
BstNI	CCWGG	2 cut(s)	582, 783
BstSCI	CCNGG	2 cut(s)	580, 781
BstSFI	CTRYAG	2 cut(s)	423, 504
BstSLI	GKGCMC	2 cut(s)	334, 370
BstV1I	GCAGC	3 cut(s)	28, 162, 742
BstV2I	GAAGAC	1 cut(s)	583
BstX2I	RGATCY	2 cut(s)	536, 547
BstYI	RGATCY	2 cut(s)	536, 547
BstZ17I	GTATAC	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	787
BtsCI	GGATG	1 cut(s)	348
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	3 cut(s)	399, 646, 802
BveI	ACCTGC	2 cut(s)	379, 643
Cac8I	GCNNGC	1 cut(s)	376
Cfr13I	GGNCC	3 cut(s)	122, 467, 785
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	130, 338
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	5 cut(s)	51, 105, 569, 596, 659
DpnI	GATC	3 cut(s)	286, 538, 549
DpnII	GATC	3 cut(s)	284, 536, 547
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	380
Eco47I	GGWCC	2 cut(s)	122, 467
EcoRI	GAATTC	1 cut(s)	309
EcoRII	CCWGG	2 cut(s)	580, 781
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	133, 341
FatI	CATG	2 cut(s)	129, 337
FauI	CCCGC	1 cut(s)	732
FblI	GTMKAC	2 cut(s)	426, 519
Fnu4HI	GCNGC	4 cut(s)	42, 151, 230, 731
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	4 cut(s)	42, 151, 230, 731
FspBI	CTAG	2 cut(s)	243, 381
GluI	GCNGC	4 cut(s)	42, 151, 230, 731
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	787
Hin1II	CATG	2 cut(s)	133, 341
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	2 cut(s)	163, 707
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	6 cut(s)	76, 332, 368, 427, 520, 703
Hpy188I	TCNGA	8 cut(s)	54, 94, 144, 486, 527, 597, 662, 770
Hpy188III	TCNNGA	8 cut(s)	68, 167, 186, 288, 317, 551, 616, 671
Hpy8I	GTNNAC	6 cut(s)	76, 332, 368, 427, 520, 703
HpyCH4III	ACNGT	2 cut(s)	80, 394
HpyCH4IV	ACGT	1 cut(s)	829
HpyCH4V	TGCA	5 cut(s)	133, 150, 332, 368, 610
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 115, 736
HpyF3I	CTNAG	5 cut(s)	51, 105, 569, 596, 659
HpySE526I	ACGT	1 cut(s)	829
Hsp92II	CATG	2 cut(s)	133, 341
Kzo9I	GATC	3 cut(s)	284, 536, 547
Lsp1109I	GCAGC	3 cut(s)	28, 162, 742
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	243, 381
MaeII	ACGT	1 cut(s)	829
MaeIII	GTNAC	2 cut(s)	212, 277
MalI	GATC	3 cut(s)	286, 538, 549
MboI	GATC	3 cut(s)	284, 536, 547
MboII	GAAGA	5 cut(s)	249, 409, 588, 695, 785
MfeI	CAATTG	1 cut(s)	734
MflI	RGATCY	2 cut(s)	536, 547
MhlI	GDGCHC	3 cut(s)	334, 370, 380
MluCI	AATT	9 cut(s)	309, 417, 445, 478, 675, 734, 757, 763, 811
MlyI	GAGTC	1 cut(s)	716
MmeI	TCCRAC	2 cut(s)	222, 281
MnlI	CCTC	9 cut(s)	55, 60, 324, 345, 393, 467, 521, 553, 720
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	582, 783
MunI	CAATTG	1 cut(s)	734
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	2 cut(s)	582, 783
MwoI	GCNNNNNNNGC	3 cut(s)	41, 115, 736
NdeII	GATC	3 cut(s)	284, 536, 547
NlaIII	CATG	2 cut(s)	133, 341
NlaIV	GGNNCC	2 cut(s)	469, 549
NmuCI	GTSAC	1 cut(s)	212
PaqCI	CACCTGC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	4 cut(s)	43, 152, 231, 732
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
Psp6I	CCWGG	2 cut(s)	580, 781
PspGI	CCWGG	2 cut(s)	580, 781
PspN4I	GGNNCC	2 cut(s)	469, 549
PspPI	GGNCC	3 cut(s)	122, 467, 785
PsuI	RGATCY	2 cut(s)	536, 547
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	4 cut(s)	42, 151, 230, 731
Sau3AI	GATC	3 cut(s)	284, 536, 547
Sau96I	GGNCC	3 cut(s)	122, 467, 785
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	2 cut(s)	582, 783
SduI	GDGCHC	3 cut(s)	334, 370, 380
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	2 cut(s)	423, 504
SinI	GGWCC	2 cut(s)	122, 467
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	2 cut(s)	315, 669
SmoI	CTYRAG	2 cut(s)	315, 669
Sse9I	AATT	9 cut(s)	309, 417, 445, 478, 675, 734, 757, 763, 811
SsiI	CCGC	3 cut(s)	229, 739, 819
SspMI	CTAG	2 cut(s)	243, 381
StyD4I	CCNGG	2 cut(s)	580, 781
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	80, 394
TaiI	ACGT	1 cut(s)	832
TaqI	TCGA	2 cut(s)	219, 844
TasI	AATT	9 cut(s)	309, 417, 445, 478, 675, 734, 757, 763, 811
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	3 cut(s)	399, 646, 802
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	3 cut(s)	41, 150, 730
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	118, 375, 603, 839
TspRI	CASTG	3 cut(s)	399, 646, 802
VneI	GTGCAC	2 cut(s)	330, 366
VpaK11BI	GGWCC	2 cut(s)	122, 467
XapI	RAATTY	4 cut(s)	309, 417, 757, 763
XmiI	GTMKAC	2 cut(s)	426, 519
XspI	CTAG	2 cut(s)	243, 381
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.