Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Forward (+)

3023958 .. 3035056

Gene Structure 11099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0038600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAGGGCCAATGTGCAATCAAGAAAGATGTCACCGAATTAATAGGAAATACCCCAATGGTATACCTGAACAATGTTGTGGAAGGTTGTGTAGCTCGTATTGCTGCCAAGCTAGAGACGATGGAACCCTGCTCTAGTGTTAAAGACAGGATTGCACATAGTATGATCAAGGATGCGGAGGATAAAGGTCTAATAAGTCCGGGAAAGACTGTTCTCATTGAGCCCACAAGTGGCAACACTGGCATTGGATTAGCATTCATAGCAGCTAGCAAGGGTTACAAGTTGAAGCTAGTCATGCCATCATCATATAGTATTGAAAGAAGAATTGTGCTCCTAGCTTTTGGAGCTGAGGTATACCTCACAGATGTGGAAAAAGGTATTAAGGGAGTTTTTGATAAGGCTGAGGAGTTGCTACGTGACACGCCTGATAGTCATATGCTTCAGCAATTTGAAAATCCTGCCAATCCAAAGATTCATTATGAAACCACTGGCCCGGAGATATGGAGAGACTCAGCAGGGAAGGTTGATATCTTGGTTTCGGGGATAGGAACCGGTGGCACAGTAACTGGTATAGGGAAATTCCTTAAAGAGCAAAATCCAGAGATCAAGGTGTACGGTGTAGAACCAGTTGAGAGTGCAGTCTTGAATGGTGGTCCACCTGGAAAGCATCTGATCCAAGGAATCGGTGCTGGCTTCATTCCTCAAGTTCTTGATGTTAGCCTGCTAGACGAAGTTATTCCAGTATCCGGTGAGGAATCTATTGAGACTGCTAAGCTACTTGCCTTAAAAGAAGGTCTTTTGGTGGGAATCTCATCTGGTGCTGCAACAGCAGCAGCAATAAAGTTGGCAAAAAGGCCAGAAAATGCCGGAAAACTAATAGTTGTCGTGTTCCCCAGTTGTGGAGAGCGGTATCTGTCTACTGAACTCTTTGATACCATTAGGCATGAGGCAGAAAACATGACATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

322

Amino Acids

34.39

Weight (kDa)

5.25

Isoelectric Point (pI)

25.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	11 - 298	5.8e-72	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	907
AccI	GTMKAC	3 cut(s)	63, 354, 917
AciI	CCGC	2 cut(s)	176, 907
AclWI	GGATC	1 cut(s)	667
AcsI	RAATTY	1 cut(s)	578
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	3 cut(s)	230, 746, 899
AgeI	ACCGGT	1 cut(s)	551
AgsI	TTSAA	4 cut(s)	286, 317, 452, 646
AjnI	CCWGG	1 cut(s)	658
AleI	CACNNNNGTG	1 cut(s)	365
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	7 cut(s)	95, 112, 266, 289, 338, 347, 775
AluI	AGCT	7 cut(s)	95, 112, 266, 289, 338, 347, 775
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	3 cut(s)	110, 501, 758
AlwI	GGATC	1 cut(s)	667
AlwNI	CAGNNNCTG	1 cut(s)	566
AoxI	GGCC	3 cut(s)	7, 490, 854
ApeKI	GCWGC	5 cut(s)	104, 263, 821, 830, 833
ApoI	RAATTY	1 cut(s)	578
AseI	ATTAAT	1 cut(s)	41
AsiGI	ACCGGT	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	735
AspS9I	GGNCC	3 cut(s)	7, 491, 653
AsuC2I	CCSGG	2 cut(s)	201, 494
AsuHPI	GGTGA	2 cut(s)	25, 761
AsuNHI	GCTAGC	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	653
BanII	GRGCYC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	333
BbvCI	CCTCAGC	2 cut(s)	348, 402
BbvI	GCAGC	5 cut(s)	91, 275, 808, 842, 845
BccI	CCATC	2 cut(s)	115, 307
BciT130I	CCWGG	1 cut(s)	660
BciVI	GTATCC	1 cut(s)	754
BclI	TGATCA	1 cut(s)	165
BcnI	CCSGG	2 cut(s)	201, 494
BcoDI	GTCTC	3 cut(s)	110, 501, 758
BfaI	CTAG	6 cut(s)	113, 135, 267, 290, 335, 725
BfuI	GTATCC	1 cut(s)	754
BisI	GCNGC	5 cut(s)	105, 264, 822, 831, 834
BlpI	GCTNAGC	1 cut(s)	771
BlsI	GCNGC	5 cut(s)	106, 265, 823, 832, 835
Bme1390I	CCNGG	3 cut(s)	201, 494, 660
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	3 cut(s)	7, 491, 653
BmiI	GGNNCC	2 cut(s)	126, 550
BmrFI	CCNGG	3 cut(s)	201, 494, 660
BmrI	ACTGGG	1 cut(s)	888
BmsI	GCATC	2 cut(s)	163, 676
BmtI	GCTAGC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	888
Bpu10I	CCTNAGC	2 cut(s)	348, 402
Bpu1102I	GCTNAGC	1 cut(s)	771
BpuEI	CTTGAG	1 cut(s)	687
BpuMI	CCSGG	2 cut(s)	201, 494
BsaAI	YACGTR	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	676
BsaWI	WCCGGW	2 cut(s)	551, 746
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 746, 899
Bse118I	RCCGGY	1 cut(s)	551
Bse1I	ACTGG	6 cut(s)	244, 493, 571, 626, 740, 894
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	676
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	3 cut(s)	230, 746, 899
BseMII	CTCAG	3 cut(s)	339, 393, 525
BseNI	ACTGG	6 cut(s)	244, 493, 571, 626, 740, 894
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	5 cut(s)	91, 275, 808, 842, 845
BsgI	GTGCAG	1 cut(s)	657
BshFI	GGCC	3 cut(s)	9, 492, 856
BshTI	ACCGGT	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	5 cut(s)	200, 494, 552, 747, 867
BslI	CCNNNNNNNGG	3 cut(s)	230, 746, 899
BsmAI	GTCTC	3 cut(s)	110, 501, 758
BsmBI	CGTCTC	1 cut(s)	110
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	3 cut(s)	9, 492, 856
Bsp1286I	GDGCHC	2 cut(s)	225, 333
Bsp143I	GATC	3 cut(s)	165, 603, 672
Bsp1720I	GCTNAGC	1 cut(s)	771
BspACI	CCGC	2 cut(s)	176, 907
BspANI	GGCC	3 cut(s)	9, 492, 856
BspCNI	CTCAG	3 cut(s)	340, 394, 524
BspLI	GGNNCC	2 cut(s)	126, 550
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	667
BsrBI	CCGCTC	1 cut(s)	907
BsrFI	RCCGGY	1 cut(s)	551
BsrI	ACTGG	6 cut(s)	244, 493, 571, 626, 740, 894
BssAI	RCCGGY	1 cut(s)	551
BssECI	CCNNGG	1 cut(s)	676
BssMI	GATC	3 cut(s)	165, 603, 672
BssNAI	GTATAC	2 cut(s)	64, 355
BssT1I	CCWWGG	1 cut(s)	676
Bst1107I	GTATAC	2 cut(s)	64, 355
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	3 cut(s)	211, 562, 617
BstBAI	YACGTR	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	268, 691, 722
BstDEI	CTNAG	4 cut(s)	348, 402, 511, 771
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	3 cut(s)	168, 606, 675
BstMAI	GTCTC	3 cut(s)	110, 501, 758
BstMBI	GATC	3 cut(s)	165, 603, 672
BstMWI	GCNNNNNNNGC	7 cut(s)	101, 240, 260, 295, 344, 827, 830
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	3 cut(s)	199, 492, 658
BstV1I	GCAGC	5 cut(s)	91, 275, 808, 842, 845
BstZ17I	GTATAC	2 cut(s)	64, 355
BsuI	GTATCC	1 cut(s)	754
BsuRI	GGCC	3 cut(s)	9, 492, 856
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	237, 486
Cac8I	GCNNGC	3 cut(s)	268, 691, 722
CaiI	CAGNNNCTG	1 cut(s)	566
Cfr10I	RCCGGY	1 cut(s)	551
Cfr13I	GGNCC	3 cut(s)	7, 491, 653
Csp6I	GTAC	1 cut(s)	613
CspAI	ACCGGT	1 cut(s)	551
CviAII	CATG	3 cut(s)	295, 944, 958
CviQI	GTAC	1 cut(s)	613
DdeI	CTNAG	4 cut(s)	348, 402, 511, 771
DpnI	GATC	3 cut(s)	167, 605, 674
DpnII	GATC	3 cut(s)	165, 603, 672
Eco130I	CCWWGG	1 cut(s)	676
Eco24I	GRGCYC	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	658
EcoRV	GATATC	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	676
EcoT38I	GRGCYC	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	676
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	3 cut(s)	298, 947, 961
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FatI	CATG	3 cut(s)	294, 943, 957
FauNDI	CATATG	1 cut(s)	435
FbaI	TGATCA	1 cut(s)	165
FblI	GTMKAC	3 cut(s)	63, 354, 917
Fnu4HI	GCNGC	5 cut(s)	105, 264, 822, 831, 834
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	5 cut(s)	105, 264, 822, 831, 834
FspBI	CTAG	6 cut(s)	113, 135, 267, 290, 335, 725
GluI	GCNGC	5 cut(s)	105, 264, 822, 831, 834
HaeIII	GGCC	3 cut(s)	9, 492, 856
HapII	CCGG	5 cut(s)	200, 494, 552, 747, 867
Hin1II	CATG	3 cut(s)	298, 947, 961
HinfI	GANTC	5 cut(s)	472, 509, 681, 755, 807
HpaII	CCGG	5 cut(s)	200, 494, 552, 747, 867
HphI	GGTGA	2 cut(s)	25, 761
Hpy166II	GTNNAC	5 cut(s)	64, 355, 613, 656, 918
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	4 cut(s)	22, 599, 643, 710
Hpy8I	GTNNAC	5 cut(s)	64, 355, 613, 656, 918
HpyAV	CCTTC	3 cut(s)	77, 514, 785
HpyCH4III	ACNGT	3 cut(s)	211, 562, 617
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	4 cut(s)	17, 155, 638, 824
HpyF10VI	GCNNNNNNNGC	7 cut(s)	101, 240, 260, 295, 344, 827, 830
HpyF3I	CTNAG	4 cut(s)	348, 402, 511, 771
HpySE526I	ACGT	1 cut(s)	415
Hsp92II	CATG	3 cut(s)	298, 947, 961
Ksp22I	TGATCA	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	165, 603, 672
LmnI	GCTCC	2 cut(s)	336, 344
Lsp1109I	GCAGC	5 cut(s)	91, 275, 808, 842, 845
LweI	GCATC	2 cut(s)	163, 676
MaeI	CTAG	6 cut(s)	113, 135, 267, 290, 335, 725
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	4 cut(s)	31, 275, 416, 562
MalI	GATC	3 cut(s)	167, 605, 674
MbiI	CCGCTC	1 cut(s)	907
MboI	GATC	3 cut(s)	165, 603, 672
MboII	GAAGA	1 cut(s)	333
MhlI	GDGCHC	2 cut(s)	225, 333
MluCI	AATT	4 cut(s)	38, 324, 446, 578
MlyI	GAGTC	1 cut(s)	503
MnlI	CCTC	7 cut(s)	172, 343, 368, 397, 711, 745, 940
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	5 cut(s)	41, 141, 381, 585, 785
MslI	CAYNNNNRTG	1 cut(s)	365
MspI	CCGG	5 cut(s)	200, 494, 552, 747, 867
MspR9I	CCNGG	3 cut(s)	201, 494, 660
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	7 cut(s)	101, 240, 260, 295, 344, 827, 830
NciI	CCSGG	2 cut(s)	201, 494
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	3 cut(s)	165, 603, 672
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	3 cut(s)	298, 947, 961
NlaIV	GGNNCC	2 cut(s)	126, 550
NmuCI	GTSAC	2 cut(s)	31, 416
OliI	CACNNNNGTG	1 cut(s)	365
PctI	GAATGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	4 cut(s)	472, 681, 755, 807
PfoI	TCCNGGA	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	551
PkrI	GCNGC	5 cut(s)	106, 265, 823, 832, 835
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
Ppu21I	YACGTR	1 cut(s)	416
PshBI	ATTAAT	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	2 cut(s)	126, 550
PspPI	GGNCC	3 cut(s)	7, 491, 653
PstNI	CAGNNNCTG	1 cut(s)	566
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	5 cut(s)	41, 141, 381, 585, 785
SatI	GCNGC	5 cut(s)	105, 264, 822, 831, 834
Sau3AI	GATC	3 cut(s)	165, 603, 672
Sau96I	GGNCC	3 cut(s)	7, 491, 653
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	3 cut(s)	201, 494, 660
SduI	GDGCHC	2 cut(s)	225, 333
SfaNI	GCATC	2 cut(s)	163, 676
SinI	GGWCC	1 cut(s)	653
SmiMI	CAYNNNNRTG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
Sse9I	AATT	4 cut(s)	38, 324, 446, 578
SsiI	CCGC	2 cut(s)	176, 907
SspMI	CTAG	6 cut(s)	113, 135, 267, 290, 335, 725
StyD4I	CCNGG	3 cut(s)	199, 492, 658
StyI	CCWWGG	1 cut(s)	676
TaaI	ACNGT	3 cut(s)	211, 562, 617
TaiI	ACGT	1 cut(s)	418
TasI	AATT	4 cut(s)	38, 324, 446, 578
TfiI	GAWTC	4 cut(s)	472, 681, 755, 807
Tru1I	TTAA	5 cut(s)	41, 141, 381, 585, 785
Tru9I	TTAA	5 cut(s)	41, 141, 381, 585, 785
TscAI	CASTG	2 cut(s)	244, 493
TseFI	GTSAC	2 cut(s)	31, 416
TseI	GCWGC	5 cut(s)	104, 263, 821, 830, 833
Tsp45I	GTSAC	2 cut(s)	31, 416
TspDTI	ATGAA	4 cut(s)	247, 464, 495, 685
TspRI	CASTG	2 cut(s)	244, 493
VpaK11BI	GGWCC	1 cut(s)	653
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	1 cut(s)	578
XmiI	GTMKAC	3 cut(s)	63, 354, 917
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	6 cut(s)	113, 135, 267, 290, 335, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.