Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Forward (+)

3197527 .. 3200672

Gene Structure 3146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g04070.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTCGGGTTCATACGCTCAGAATTTCTCACCGGCGAGAGCGCTTTCTCCGCACCTGAGAACGCTGCCCGATGTGGACAGCCAGTACTTGACGGAGCTGTTGGCGGAGCACCAAAAGCTCGGGCCTTTCGCTCAGGTCGTCCCCATATGCGGCCGCCTCTTGAATCAAGAGATAATTCGCGTCTCTGGAATGATGCCCAACCAAGGGTTTGGTGACTTTGACAGACTGCAACGTGGAAGTCCTAGCCCTATTGGTTCAGACATAATGCCAAAATATAGAGGGTCAGGCCTCGGTGGCTGGAACGGACGGCCTCATGATAGATTAGGTGGTCCACAAGGGATGAATATGGAGTGGCAAGTTGCACCATCAAGCCCAAGTTCCTACATTGTGAAGAGGATTTTGCGCTTGGATATTCCAGTAGACAGCTTTCCAAATTTCAATTTTGTTGGCCGGCTTCTGGGTCCTAGAGGCAATTCACTAAAGCGGGTGGAAGCTTCTACAGGTTGTCGTGTGTACATAAGAGGAAAATGTTCAATAAGAGATATTGACAAGGAGGAATCGTTGAGGGGAAGACCGGGTTATGAGCATCTGAATGATCGACTGCACATTATAATTGAGGCTGAATTGCCTGCTAATATTGTTGATATGCGGTTGAGACAGGCAAAACAAATCATAGAAGAACTTCTCAAACCTATGGATGAGTCACAAGACCACTACAAGAGGGAACAATTGAGAGAACTAGCTATGCTGAAATCCAATTTACGAGAAGAGAGCCCTCAACCATATGGTAGTGTCTCTCCTTTCACTTCAAGCGGGATGAAGCGTGCCAAAACTGGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

281

Amino Acids

31.41

Weight (kDa)

9.38

Isoelectric Point (pI)

59.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	420
AccII	CGCG	1 cut(s)	180
AciI	CCGC	7 cut(s)	50, 104, 150, 154, 484, 649, 813
AcoI	YGGCCR	2 cut(s)	151, 448
AcsI	RAATTY	2 cut(s)	22, 433
AfaI	GTAC	2 cut(s)	86, 515
AfeI	AGCGCT	1 cut(s)	42
AfiI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
AgsI	TTSAA	4 cut(s)	163, 439, 534, 810
AluBI	AGCT	5 cut(s)	97, 118, 426, 494, 743
AluI	AGCT	5 cut(s)	97, 118, 426, 494, 743
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	3 cut(s)	187, 649, 799
Ama87I	CYCGRG	1 cut(s)	119
Aor51HI	AGCGCT	1 cut(s)	42
AoxI	GGCC	5 cut(s)	122, 151, 286, 308, 448
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	2 cut(s)	22, 433
Asp700I	GAANNNNTTC	2 cut(s)	529, 681
AspLEI	GCGC	2 cut(s)	43, 405
AspS9I	GGNCC	3 cut(s)	122, 329, 461
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	2 cut(s)	21, 224
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	329, 461
BanII	GRGCYC	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	577
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	576
BcoDI	GTCTC	3 cut(s)	187, 649, 799
BfaI	CTAG	3 cut(s)	243, 465, 740
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	44
BglI	GCCNNNNNGGC	1 cut(s)	294
BisI	GCNGC	3 cut(s)	65, 151, 154
BlsI	GCNGC	3 cut(s)	66, 152, 155
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	2 cut(s)	329, 461
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	122, 329, 461
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	2 cut(s)	183, 595
BpiI	GAAGAC	1 cut(s)	577
Bpu10I	CCTNAGC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	576
BsaJI	CCNNGG	2 cut(s)	202, 289
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
Bse118I	RCCGGY	2 cut(s)	31, 450
Bse1I	ACTGG	3 cut(s)	82, 416, 838
BseDI	CCNNGG	2 cut(s)	202, 289
BseGI	GGATG	3 cut(s)	345, 703, 822
BseLI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
BseMII	CTCAG	3 cut(s)	32, 47, 146
BseNI	ACTGG	3 cut(s)	82, 416, 838
BseX3I	CGGCCG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	5 cut(s)	124, 153, 288, 310, 450
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	32, 451, 575
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
BsmAI	GTCTC	3 cut(s)	187, 649, 799
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	5 cut(s)	124, 153, 288, 310, 450
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	111, 776
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	1 cut(s)	595
BspACI	CCGC	7 cut(s)	50, 104, 150, 154, 484, 649, 813
BspANI	GGCC	5 cut(s)	124, 153, 288, 310, 450
BspCNI	CTCAG	3 cut(s)	31, 48, 145
BspFNI	CGCG	1 cut(s)	180
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	462
BsrFI	RCCGGY	2 cut(s)	31, 450
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	3 cut(s)	82, 416, 838
BssAI	RCCGGY	2 cut(s)	31, 450
BssECI	CCNNGG	2 cut(s)	202, 289
BssMI	GATC	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	202
Bst6I	CTCTTC	2 cut(s)	386, 762
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	3 cut(s)	452, 630, 825
BstDEI	CTNAG	3 cut(s)	18, 56, 132
BstF5I	GGATG	3 cut(s)	345, 703, 822
BstFNI	CGCG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	2 cut(s)	43, 405
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	3 cut(s)	187, 649, 799
BstMBI	GATC	1 cut(s)	595
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 115, 294
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	577
BstXI	CCANNNNNNTGG	1 cut(s)	209
BstZI	CGGCCG	1 cut(s)	151
BsuRI	GGCC	5 cut(s)	124, 153, 288, 310, 450
BtsCI	GGATG	3 cut(s)	345, 703, 822
Cac8I	GCNNGC	3 cut(s)	452, 630, 825
CciI	TCATGA	1 cut(s)	313
CciNI	GCGGCCGC	1 cut(s)	151
CfoI	GCGC	2 cut(s)	43, 405
Cfr10I	RCCGGY	2 cut(s)	31, 450
Cfr13I	GGNCC	3 cut(s)	122, 329, 461
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	85, 514
CviAII	CATG	1 cut(s)	314
CviQI	GTAC	2 cut(s)	85, 514
DdeI	CTNAG	3 cut(s)	18, 56, 132
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
EaeI	YGGCCR	2 cut(s)	151, 448
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	2 cut(s)	386, 762
EarI	CTCTTC	2 cut(s)	386, 762
EciI	GGCGGA	1 cut(s)	119
EclXI	CGGCCG	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	202
Eco147I	AGGCCT	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	776
Eco47I	GGWCC	2 cut(s)	329, 461
Eco47III	AGCGCT	1 cut(s)	42
Eco52I	CGGCCG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	776
ErhI	CCWWGG	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	1 cut(s)	317
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	313
FauI	CCCGC	2 cut(s)	477, 806
FauNDI	CATATG	2 cut(s)	146, 784
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	3 cut(s)	65, 151, 154
FokI	GGATG	3 cut(s)	352, 710, 829
FriOI	GRGCYC	1 cut(s)	776
Fsp4HI	GCNGC	3 cut(s)	65, 151, 154
FspBI	CTAG	3 cut(s)	243, 465, 740
GlaI	GCGC	2 cut(s)	42, 404
GluI	GCNGC	3 cut(s)	65, 151, 154
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	5 cut(s)	124, 153, 288, 310, 450
HapII	CCGG	3 cut(s)	32, 451, 575
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	2 cut(s)	43, 405
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	2 cut(s)	41, 403
HinP1I	GCGC	2 cut(s)	41, 403
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	3 cut(s)	163, 557, 701
HpaII	CCGG	3 cut(s)	32, 451, 575
HphI	GGTGA	2 cut(s)	21, 224
Hpy166II	GTNNAC	4 cut(s)	76, 332, 421, 514
Hpy188I	TCNGA	3 cut(s)	21, 259, 591
Hpy188III	TCNNGA	4 cut(s)	160, 167, 186, 314
Hpy8I	GTNNAC	4 cut(s)	76, 332, 421, 514
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	229, 362, 604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 115, 294
HpyF3I	CTNAG	3 cut(s)	18, 56, 132
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	2 cut(s)	41, 403
KroI	GCCGGC	1 cut(s)	450
KroNI	GCCGGC	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	2 cut(s)	94, 106
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	2 cut(s)	183, 595
MaeI	CTAG	3 cut(s)	243, 465, 740
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	212, 702
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	4 cut(s)	403, 582, 689, 779
MfeI	CAATTG	1 cut(s)	728
MhlI	GDGCHC	2 cut(s)	111, 776
MluCI	AATT	9 cut(s)	22, 174, 433, 439, 472, 612, 623, 728, 757
MlyI	GAGTC	1 cut(s)	710
MroNI	GCCGGC	1 cut(s)	450
MroXI	GAANNNNTTC	2 cut(s)	529, 681
MslI	CAYNNNNRTG	1 cut(s)	591
MspI	CCGG	3 cut(s)	32, 451, 575
MspR9I	CCNGG	1 cut(s)	576
MunI	CAATTG	1 cut(s)	728
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	49, 115, 294
NaeI	GCCGGC	1 cut(s)	452
NciI	CCSGG	1 cut(s)	576
NdeI	CATATG	2 cut(s)	146, 784
NdeII	GATC	1 cut(s)	595
NgoMIV	GCCGGC	1 cut(s)	450
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	2 cut(s)	212, 702
NotI	GCGGCCGC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	452
PdmI	GAANNNNTTC	2 cut(s)	529, 681
PfeI	GAWTC	2 cut(s)	163, 557
PkrI	GCNGC	3 cut(s)	66, 152, 155
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
PpuMI	RGGWCCY	1 cut(s)	461
PsiI	TTATAA	1 cut(s)	611
Psp5II	RGGWCCY	1 cut(s)	461
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	3 cut(s)	122, 329, 461
PspPPI	RGGWCCY	1 cut(s)	461
RsaI	GTAC	2 cut(s)	86, 515
RsaNI	GTAC	2 cut(s)	85, 514
RseI	CAYNNNNRTG	1 cut(s)	591
SatI	GCNGC	3 cut(s)	65, 151, 154
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	3 cut(s)	122, 329, 461
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	1 cut(s)	710
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	2 cut(s)	111, 776
SfaNI	GCATC	2 cut(s)	183, 595
SfcI	CTRYAG	1 cut(s)	498
SgrAI	CRCCGGYG	1 cut(s)	31
SinI	GGWCC	2 cut(s)	329, 461
SmiMI	CAYNNNNRTG	1 cut(s)	591
Sse9I	AATT	9 cut(s)	22, 174, 433, 439, 472, 612, 623, 728, 757
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	7 cut(s)	50, 104, 150, 154, 484, 649, 813
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	3 cut(s)	243, 465, 740
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	1 cut(s)	202
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	598
TasI	AATT	9 cut(s)	22, 174, 433, 439, 472, 612, 623, 728, 757
TatI	WGTACW	2 cut(s)	84, 513
TauI	GCSGC	2 cut(s)	153, 156
TfiI	GAWTC	2 cut(s)	163, 557
TseFI	GTSAC	2 cut(s)	212, 702
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	2 cut(s)	212, 702
TspDTI	ATGAA	2 cut(s)	356, 833
TspGWI	ACGGA	2 cut(s)	107, 318
VpaK11BI	GGWCC	2 cut(s)	329, 461
XapI	RAATTY	2 cut(s)	22, 433
XmiI	GTMKAC	1 cut(s)	420
XmnI	GAANNNNTTC	2 cut(s)	529, 681
XspI	CTAG	3 cut(s)	243, 465, 740
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.