Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Forward (+)

2917015 .. 2920799

Gene Structure 3785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G038700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTCAGGTTCTTATGCTCAGAATTTCTCACCGGCGAGAGCGCTCTCTCCGCACCTAAGAACCCCGCCCGATGTGGATAGCCAGTACTTGACTGAGCTGTTGGCGGAGCACCAAAAGCTTGGACCTTTCGCGCAGGTCGTCCCCATATGCGGCCGACTCTTGAATCAAGAGATAATACGGGTTTCTGGAATGATGCCCAACCAAGGGTTTAGTGACTTTGACAGAATGCAACGTGGAAGCCCTAGCCCCATTGGTTCAGACATAATGCCAAACTATAGAGGGTCAGGCCTAGGTGGCTGGAACGGCCGACCTCACGATAGATTAGGTGGTCCACAAGGGATGAATATGGAATGGCAAGTCGCACCATCAAGCCCAAGTTCCTACATTGTGAAGAGGATATTGCGCTTGGATATTCCAGTAGATAGCTTTCCAAATTTCAATTTTGTGGGCCGGCTTCTGGGTCCTAGAGGCAATTCACTAAAGAGGGTGGAAGCTTCTACAGGCTGTCGTGTATACATAAGAGGAAAATGTTCAATAAGAGATATTGACAAGGAGGAATCTTTGAGAGGAAGACCAGGTTATGAACATCTGAATGATCCGCTGCACATTATAATTGAGGCTGAATTACCTGCTAATATTGTTGATATGCGGTTGAGACAGGCAAAACAAATCATAGAAGAACTTCTCAAACCGATGGACGAGTCACAAGACCACTACAAGAGGGAACAGCTGAGAGAACTAGCTATGCTAAAATCCAATCTAAGAGAAGAGAGTCCTCAACCATATGGTAGTGTATCTCCTTTCACTTCAAGTGGGATGAAGCGTGCCAAAACTGGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

281

Amino Acids

31.37

Weight (kDa)

9.13

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
Acc36I	ACCTGC	2 cut(s)	124, 637
AccI	GTMKAC	1 cut(s)	513
AccII	CGCG	1 cut(s)	131
AciI	CCGC	6 cut(s)	50, 65, 104, 150, 599, 649
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	2 cut(s)	151, 304
AcsI	RAATTY	2 cut(s)	22, 433
AfaI	GTAC	1 cut(s)	86
AfeI	AGCGCT	1 cut(s)	42
AfiI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
AgsI	TTSAA	4 cut(s)	163, 439, 534, 810
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	6 cut(s)	97, 118, 426, 494, 730, 743
AluI	AGCT	6 cut(s)	97, 118, 426, 494, 730, 743
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	649
AlwI	GGATC	1 cut(s)	590
Aor51HI	AGCGCT	1 cut(s)	42
AoxI	GGCC	4 cut(s)	151, 286, 304, 448
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	2 cut(s)	22, 433
Asp700I	GAANNNNTTC	2 cut(s)	529, 681
AspA2I	CCTAGG	1 cut(s)	289
AspLEI	GCGC	3 cut(s)	43, 133, 405
AspS9I	GGNCC	4 cut(s)	122, 329, 448, 461
AsuHPI	GGTGA	1 cut(s)	21
AvaII	GGWCC	3 cut(s)	122, 329, 461
AvrII	CCTAGG	1 cut(s)	289
BbsI	GAAGAC	1 cut(s)	577
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	2 cut(s)	373, 688
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	649
BfaI	CTAG	4 cut(s)	243, 290, 465, 740
BfmI	CTRYAG	2 cut(s)	274, 498
BfoI	RGCGCY	1 cut(s)	44
BfuAI	ACCTGC	2 cut(s)	124, 637
BglI	GCCNNNNNGGC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	151, 602
BlnI	CCTAGG	1 cut(s)	289
BlsI	GCNGC	2 cut(s)	152, 603
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	3 cut(s)	122, 329, 461
BmgT120I	GGNCC	4 cut(s)	122, 329, 448, 461
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	577
BsaJI	CCNNGG	2 cut(s)	202, 289
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
Bse118I	RCCGGY	2 cut(s)	31, 450
Bse1I	ACTGG	3 cut(s)	82, 416, 838
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	202, 289
BseGI	GGATG	2 cut(s)	345, 822
BseLI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
BseMII	CTCAG	3 cut(s)	32, 84, 722
BseNI	ACTGG	3 cut(s)	82, 416, 838
BseX3I	CGGCCG	2 cut(s)	151, 304
BseXI	GCAGC	1 cut(s)	588
BsgI	GTGCAG	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	2 cut(s)	154, 307
BshFI	GGCC	4 cut(s)	153, 288, 306, 450
BsiEI	CGRYCG	2 cut(s)	154, 307
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	2 cut(s)	32, 451
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
BsmAI	GTCTC	1 cut(s)	649
BsmFI	GGGAC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	4 cut(s)	153, 288, 306, 450
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	595
BspACI	CCGC	6 cut(s)	50, 65, 104, 150, 599, 649
BspANI	GGCC	4 cut(s)	153, 288, 306, 450
BspCNI	CTCAG	3 cut(s)	31, 85, 723
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	462
BspMI	ACCTGC	2 cut(s)	124, 637
BspPI	GGATC	1 cut(s)	590
BsrFI	RCCGGY	2 cut(s)	31, 450
BsrI	ACTGG	3 cut(s)	82, 416, 838
BssAI	RCCGGY	2 cut(s)	31, 450
BssECI	CCNNGG	2 cut(s)	202, 289
BssMI	GATC	1 cut(s)	595
BssNAI	GTATAC	1 cut(s)	514
BssT1I	CCWWGG	2 cut(s)	202, 289
Bst1107I	GTATAC	1 cut(s)	514
Bst2UI	CCWGG	1 cut(s)	576
Bst6I	CTCTTC	2 cut(s)	386, 762
BstC8I	GCNNGC	2 cut(s)	452, 825
BstDEI	CTNAG	5 cut(s)	18, 56, 93, 731, 761
BstF5I	GGATG	2 cut(s)	345, 822
BstFNI	CGCG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	3 cut(s)	43, 133, 405
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	1 cut(s)	649
BstMBI	GATC	1 cut(s)	595
BstMCI	CGRYCG	2 cut(s)	154, 307
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 115, 294, 303
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	2 cut(s)	274, 498
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	1 cut(s)	577
BstXI	CCANNNNNNTGG	1 cut(s)	119
BstZ17I	GTATAC	1 cut(s)	514
BstZI	CGGCCG	2 cut(s)	151, 304
BsuRI	GGCC	4 cut(s)	153, 288, 306, 450
BtsCI	GGATG	2 cut(s)	345, 822
BveI	ACCTGC	2 cut(s)	124, 637
Cac8I	GCNNGC	2 cut(s)	452, 825
CfoI	GCGC	3 cut(s)	43, 133, 405
Cfr10I	RCCGGY	2 cut(s)	31, 450
Cfr13I	GGNCC	4 cut(s)	122, 329, 448, 461
CsiI	ACCWGGT	1 cut(s)	574
Csp6I	GTAC	1 cut(s)	85
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	5 cut(s)	18, 56, 93, 731, 761
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
EaeI	YGGCCR	2 cut(s)	151, 304
EagI	CGGCCG	2 cut(s)	151, 304
Eam1104I	CTCTTC	2 cut(s)	386, 762
EarI	CTCTTC	2 cut(s)	386, 762
EciI	GGCGGA	1 cut(s)	119
EclXI	CGGCCG	2 cut(s)	151, 304
Eco130I	CCWWGG	2 cut(s)	202, 289
Eco147I	AGGCCT	1 cut(s)	288
Eco47I	GGWCC	3 cut(s)	122, 329, 461
Eco47III	AGCGCT	1 cut(s)	42
Eco52I	CGGCCG	2 cut(s)	151, 304
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	2 cut(s)	202, 289
ErhI	CCWWGG	2 cut(s)	202, 289
FaqI	GGGAC	1 cut(s)	125
FauI	CCCGC	1 cut(s)	72
FauNDI	CATATG	2 cut(s)	146, 784
FblI	GTMKAC	1 cut(s)	513
Fnu4HI	GCNGC	2 cut(s)	151, 602
FokI	GGATG	2 cut(s)	352, 829
Fsp4HI	GCNGC	2 cut(s)	151, 602
FspBI	CTAG	4 cut(s)	243, 290, 465, 740
GlaI	GCGC	3 cut(s)	42, 132, 404
GluI	GCNGC	2 cut(s)	151, 602
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	4 cut(s)	153, 288, 306, 450
HapII	CCGG	2 cut(s)	32, 451
HhaI	GCGC	3 cut(s)	43, 133, 405
Hin6I	GCGC	3 cut(s)	41, 131, 403
HinP1I	GCGC	3 cut(s)	41, 131, 403
HindIII	AAGCTT	2 cut(s)	116, 492
HinfI	GANTC	5 cut(s)	156, 163, 557, 701, 772
HpaII	CCGG	2 cut(s)	32, 451
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	2 cut(s)	332, 514
Hpy188I	TCNGA	3 cut(s)	21, 259, 591
Hpy188III	TCNNGA	4 cut(s)	160, 167, 186, 314
Hpy8I	GTNNAC	2 cut(s)	332, 514
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	2 cut(s)	229, 604
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 115, 294, 303
HpyF3I	CTNAG	5 cut(s)	18, 56, 93, 731, 761
HpySE526I	ACGT	1 cut(s)	232
HspAI	GCGC	3 cut(s)	41, 131, 403
KroI	GCCGGC	1 cut(s)	450
KroNI	GCCGGC	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	1 cut(s)	183
MabI	ACCWGGT	1 cut(s)	574
MaeI	CTAG	4 cut(s)	243, 290, 465, 740
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	212, 702
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	4 cut(s)	403, 582, 689, 779
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	6 cut(s)	22, 433, 439, 472, 612, 623
MlyI	GAGTC	3 cut(s)	150, 710, 781
MroNI	GCCGGC	1 cut(s)	450
MroXI	GAANNNNTTC	2 cut(s)	529, 681
MslI	CAYNNNNRTG	1 cut(s)	591
MspA1I	CMGCKG	2 cut(s)	601, 730
MspI	CCGG	2 cut(s)	32, 451
MspR9I	CCNGG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	49, 115, 294, 303
NaeI	GCCGGC	1 cut(s)	452
NdeI	CATATG	2 cut(s)	146, 784
NdeII	GATC	1 cut(s)	595
NgoMIV	GCCGGC	1 cut(s)	450
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	2 cut(s)	212, 702
PceI	AGGCCT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PctI	GAATGC	1 cut(s)	231
PdiI	GCCGGC	1 cut(s)	452
PdmI	GAANNNNTTC	2 cut(s)	529, 681
PfeI	GAWTC	2 cut(s)	163, 557
PkrI	GCNGC	2 cut(s)	152, 603
PleI	GAGTC	3 cut(s)	150, 709, 780
PpsI	GAGTC	3 cut(s)	150, 709, 780
PpuMI	RGGWCCY	1 cut(s)	461
PsiI	TTATAA	1 cut(s)	611
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	4 cut(s)	122, 329, 448, 461
PspPPI	RGGWCCY	1 cut(s)	461
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	591
SatI	GCNGC	2 cut(s)	151, 602
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	4 cut(s)	122, 329, 448, 461
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	3 cut(s)	150, 710, 781
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	1 cut(s)	111
SexAI	ACCWGGT	1 cut(s)	574
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	2 cut(s)	274, 498
SgrAI	CRCCGGYG	1 cut(s)	31
SinI	GGWCC	3 cut(s)	122, 329, 461
SmiMI	CAYNNNNRTG	1 cut(s)	591
Sse9I	AATT	6 cut(s)	22, 433, 439, 472, 612, 623
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	6 cut(s)	50, 65, 104, 150, 599, 649
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	4 cut(s)	243, 290, 465, 740
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	2 cut(s)	202, 289
TaiI	ACGT	1 cut(s)	235
TasI	AATT	6 cut(s)	22, 433, 439, 472, 612, 623
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	163, 557
TseFI	GTSAC	2 cut(s)	212, 702
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	2 cut(s)	212, 702
TspDTI	ATGAA	3 cut(s)	356, 597, 833
VpaK11BI	GGWCC	3 cut(s)	122, 329, 461
XapI	RAATTY	2 cut(s)	22, 433
XmaJI	CCTAGG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	513
XmnI	GAANNNNTTC	2 cut(s)	529, 681
XspI	CTAG	4 cut(s)	243, 290, 465, 740
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.