Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Reverse (-)

41613377 .. 41617019

Gene Structure 3643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025054

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTCAGGGTTGTATAATCCCAACTTCTCTCCTGCCAGAGCTGCCTCTCCTCAGATTAGAAGCACTCCAGATGTTGACAGTCAGTACTTGTCAGAGCTGCTAGCAGAGCATCAAAAGCTTGGACCTTTCATGCAAGTGCTTCCGATATGTAGCCGACTCTTGAATCAAGAGATTCTACGGGTTTCTGGAATGATGTCCAACCAAGGTTTCGGCGACTTCGACAGAATGCGACATAGAAGTCCTAGTCCAATGGCTTCTTCAAACCTTATGTCAAGTGTCACTGGGACAGGATTGGGTGGTTGGAATGGACTTCCTCAAGAGCAGAGATTAAGTGGACCTCATGGGATGACAATGGACTGGCAAGGTGCACCTGCGAGCCCTAGTTCATACACAGTGAAGAGGATTTTACGCTTGGAAATTCCTGTAGACACTTACCCCAACTTCAATTTTGTTGGGCGACTTCTTGGACCCAGAGGTAATTCTTTGAAACGAGTTGAAGCTACTACGGGGTGTCGTGTATACATTAGAGGCAAAGGATCTATCAAGGATCCGGACAAGGAGGACAAGCTAAGGGGAAGACCAGGCTATGAACATCTGAGCGAACCACTCCACATCTTAATTGAAGCCGATTTACCTGCCAGTGTTGTTGATATAAGGCTCAGACAGGCCCAAGAAATTATCGAAGAACTGCTCAAACCTGTGGACGAGTCACAAGATTATATTAAGAGGCAGCAATTGCGGGAGTTGGCTTTGATAAATTCAAATTTCAGAGAAGAAAGTCCTGGGCCAAGTGGCAGCGTATCTCCTTTCAATTCAAGTGGAATGAAACGTGCTAAAACAGGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

283

Amino Acids

31.27

Weight (kDa)

9.25

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	23 - 72	3.2e-16	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	145 - 232	1.5e-21	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	379
AasI	GACNNNNNNGTC	1 cut(s)	237
Acc36I	ACCTGC	2 cut(s)	379, 643
AccI	GTMKAC	2 cut(s)	426, 519
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	1 cut(s)	739
AclWI	GGATC	3 cut(s)	542, 544, 555
AcsI	RAATTY	3 cut(s)	417, 757, 763
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	9 cut(s)	163, 261, 445, 487, 497, 623, 762, 811, 816
AjnI	CCWGG	2 cut(s)	580, 781
AjuI	GAANNNNNNNTTGG	4 cut(s)	191, 223, 241, 273
AluBI	AGCT	5 cut(s)	41, 97, 118, 500, 568
AluI	AGCT	5 cut(s)	41, 97, 118, 500, 568
Alw21I	GWGCWC	1 cut(s)	370
Alw44I	GTGCAC	1 cut(s)	366
AlwI	GGATC	3 cut(s)	542, 544, 555
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	2 cut(s)	666, 785
ApaLI	GTGCAC	1 cut(s)	366
ApeKI	GCWGC	4 cut(s)	41, 97, 730, 795
ApoI	RAATTY	3 cut(s)	417, 757, 763
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspS9I	GGNCC	5 cut(s)	122, 335, 467, 667, 785
AsuNHI	GCTAGC	1 cut(s)	100
AvaII	GGWCC	3 cut(s)	122, 335, 467
BaeGI	GKGCMC	1 cut(s)	370
BamHI	GGATCC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	615, 647
BbsI	GAAGAC	1 cut(s)	583
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	4 cut(s)	28, 84, 742, 807
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	2 cut(s)	582, 783
BfaI	CTAG	3 cut(s)	101, 243, 381
BfmI	CTRYAG	1 cut(s)	423
BfuAI	ACCTGC	2 cut(s)	379, 643
BisI	GCNGC	4 cut(s)	42, 98, 731, 796
BlsI	GCNGC	4 cut(s)	43, 99, 732, 797
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	582, 783
Bme18I	GGWCC	3 cut(s)	122, 335, 467
BmgT120I	GGNCC	5 cut(s)	122, 335, 467, 667, 785
BmiI	GGNNCC	2 cut(s)	469, 549
BmrFI	CCNGG	2 cut(s)	582, 783
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	118
BmtI	GCTAGC	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	583
BpmI	CTGGAG	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	202, 782
BsaWI	WCCGGW	1 cut(s)	550
Bse1I	ACTGG	3 cut(s)	286, 362, 639
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	582, 783
BseDI	CCNNGG	2 cut(s)	202, 782
BseGI	GGATG	1 cut(s)	351
BseMII	CTCAG	3 cut(s)	65, 587, 673
BseNI	ACTGG	3 cut(s)	286, 362, 639
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	4 cut(s)	28, 84, 742, 807
BshFI	GGCC	2 cut(s)	668, 787
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	668, 787
Bsp1286I	GDGCHC	2 cut(s)	370, 380
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	2 cut(s)	536, 547
BspACI	CCGC	1 cut(s)	739
BspANI	GGCC	2 cut(s)	668, 787
BspCNI	CTCAG	3 cut(s)	64, 588, 672
BspEI	TCCGGA	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	469, 549
BspMI	ACCTGC	2 cut(s)	379, 643
BspOI	GCTAGC	1 cut(s)	104
BspPI	GGATC	3 cut(s)	542, 544, 555
BsrI	ACTGG	3 cut(s)	286, 362, 639
BssECI	CCNNGG	2 cut(s)	202, 782
BssMI	GATC	2 cut(s)	536, 547
BssNAI	GTATAC	1 cut(s)	520
BssT1I	CCWWGG	1 cut(s)	202
Bst1107I	GTATAC	1 cut(s)	520
Bst2UI	CCWGG	2 cut(s)	582, 783
Bst4CI	ACNGT	2 cut(s)	80, 394
Bst6I	CTCTTC	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	736
BstC8I	GCNNGC	2 cut(s)	102, 376
BstDEI	CTNAG	4 cut(s)	51, 569, 596, 659
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	2 cut(s)	539, 550
BstMBI	GATC	2 cut(s)	536, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 106, 115, 736
BstNI	CCWGG	2 cut(s)	582, 783
BstSCI	CCNGG	2 cut(s)	580, 781
BstSFI	CTRYAG	1 cut(s)	423
BstSLI	GKGCMC	1 cut(s)	370
BstV1I	GCAGC	4 cut(s)	28, 84, 742, 807
BstV2I	GAAGAC	1 cut(s)	583
BstX2I	RGATCY	2 cut(s)	536, 547
BstYI	RGATCY	2 cut(s)	536, 547
BstZ17I	GTATAC	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	668, 787
BtsCI	GGATG	1 cut(s)	351
BtsIMutI	CAGTG	3 cut(s)	279, 399, 646
BveI	ACCTGC	2 cut(s)	379, 643
Cac8I	GCNNGC	2 cut(s)	102, 376
Cfr13I	GGNCC	5 cut(s)	122, 335, 467, 667, 785
Csp6I	GTAC	1 cut(s)	85
CspCI	CAANNNNNGTGG	2 cut(s)	799, 834
CviAII	CATG	2 cut(s)	130, 341
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	4 cut(s)	51, 569, 596, 659
DpnI	GATC	2 cut(s)	538, 549
DpnII	GATC	2 cut(s)	536, 547
DrdI	GACNNNNNNGTC	1 cut(s)	237
DseDI	GACNNNNNNGTC	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	380
Eco47I	GGWCC	3 cut(s)	122, 335, 467
EcoRII	CCWGG	2 cut(s)	580, 781
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	133, 344
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	2 cut(s)	129, 340
FauI	CCCGC	1 cut(s)	732
FblI	GTMKAC	2 cut(s)	426, 519
Fnu4HI	GCNGC	4 cut(s)	42, 98, 731, 796
FokI	GGATG	1 cut(s)	358
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	4 cut(s)	42, 98, 731, 796
FspBI	CTAG	3 cut(s)	101, 243, 381
GluI	GCNGC	4 cut(s)	42, 98, 731, 796
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	668, 787
HapII	CCGG	1 cut(s)	551
Hin1II	CATG	2 cut(s)	133, 344
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	4 cut(s)	156, 163, 172, 707
HpaII	CCGG	1 cut(s)	551
Hpy166II	GTNNAC	6 cut(s)	76, 335, 368, 427, 520, 703
Hpy188I	TCNGA	6 cut(s)	54, 94, 144, 597, 662, 770
Hpy188III	TCNNGA	6 cut(s)	68, 160, 167, 186, 317, 551
Hpy8I	GTNNAC	6 cut(s)	76, 335, 368, 427, 520, 703
HpyCH4III	ACNGT	2 cut(s)	80, 394
HpyCH4IV	ACGT	1 cut(s)	829
HpyCH4V	TGCA	2 cut(s)	133, 368
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 106, 115, 736
HpyF3I	CTNAG	4 cut(s)	51, 569, 596, 659
HpySE526I	ACGT	1 cut(s)	829
Hsp92II	CATG	2 cut(s)	133, 344
Kpn2I	TCCGGA	1 cut(s)	550
Kzo9I	GATC	2 cut(s)	536, 547
Lsp1109I	GCAGC	4 cut(s)	28, 84, 742, 807
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	3 cut(s)	101, 243, 381
MaeII	ACGT	1 cut(s)	829
MaeIII	GTNAC	2 cut(s)	277, 708
MalI	GATC	2 cut(s)	538, 549
MboI	GATC	2 cut(s)	536, 547
MboII	GAAGA	5 cut(s)	249, 409, 588, 695, 785
MfeI	CAATTG	1 cut(s)	734
MflI	RGATCY	2 cut(s)	536, 547
MhlI	GDGCHC	2 cut(s)	370, 380
MluCI	AATT	9 cut(s)	417, 445, 478, 618, 675, 734, 757, 763, 811
MlyI	GAGTC	2 cut(s)	150, 716
MmeI	TCCRAC	2 cut(s)	222, 281
MnlI	CCTC	9 cut(s)	55, 60, 324, 348, 393, 467, 521, 553, 720
MroI	TCCGGA	1 cut(s)	550
MseI	TTAA	3 cut(s)	329, 617, 723
MslI	CAYNNNNRTG	1 cut(s)	134
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	2 cut(s)	582, 783
MunI	CAATTG	1 cut(s)	734
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	2 cut(s)	582, 783
MwoI	GCNNNNNNNGC	4 cut(s)	41, 106, 115, 736
NdeII	GATC	2 cut(s)	536, 547
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	133, 344
NlaIV	GGNNCC	2 cut(s)	469, 549
NmuCI	GTSAC	2 cut(s)	277, 708
PaqCI	CACCTGC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	163, 172
PkrI	GCNGC	4 cut(s)	43, 99, 732, 797
PleI	GAGTC	2 cut(s)	150, 715
PpsI	GAGTC	2 cut(s)	150, 715
Psp6I	CCWGG	2 cut(s)	580, 781
PspGI	CCWGG	2 cut(s)	580, 781
PspN4I	GGNNCC	2 cut(s)	469, 549
PspPI	GGNCC	5 cut(s)	122, 335, 467, 667, 785
PsuI	RGATCY	2 cut(s)	536, 547
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	3 cut(s)	329, 617, 723
SatI	GCNGC	4 cut(s)	42, 98, 731, 796
Sau3AI	GATC	2 cut(s)	536, 547
Sau96I	GGNCC	5 cut(s)	122, 335, 467, 667, 785
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	150, 716
ScrFI	CCNGG	2 cut(s)	582, 783
SduI	GDGCHC	2 cut(s)	370, 380
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	3 cut(s)	122, 335, 467
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	9 cut(s)	417, 445, 478, 618, 675, 734, 757, 763, 811
SsiI	CCGC	1 cut(s)	739
SspMI	CTAG	3 cut(s)	101, 243, 381
StyD4I	CCNGG	2 cut(s)	580, 781
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	80, 394
TaiI	ACGT	1 cut(s)	832
TaqI	TCGA	3 cut(s)	219, 681, 844
TasI	AATT	9 cut(s)	417, 445, 478, 618, 675, 734, 757, 763, 811
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	163, 172
Tru1I	TTAA	3 cut(s)	329, 617, 723
Tru9I	TTAA	3 cut(s)	329, 617, 723
TscAI	CASTG	3 cut(s)	286, 399, 646
TseFI	GTSAC	2 cut(s)	277, 708
TseI	GCWGC	4 cut(s)	41, 97, 730, 795
Tsp45I	GTSAC	2 cut(s)	277, 708
TspDTI	ATGAA	4 cut(s)	118, 375, 603, 839
TspRI	CASTG	3 cut(s)	286, 399, 646
VneI	GTGCAC	1 cut(s)	366
VpaK11BI	GGWCC	3 cut(s)	122, 335, 467
XapI	RAATTY	3 cut(s)	417, 757, 763
XmiI	GTMKAC	2 cut(s)	426, 519
XspI	CTAG	3 cut(s)	101, 243, 381
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.