Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Forward (+)

4300977 .. 4304796

Gene Structure 3820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1050300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTCGGGTTCATACGCTCAGAATTTCTCACCGGCGAGAGCGCTTTCTCCGCACCTGAGAGCGCCGCCGGATGTGGACAGCCAGTACTTGACGGAGCTGTTGGCGGAGCACCAAAAGCTCGGGCCTTTCGCGCAGGTCGTCCCCATCTGCGGCCGCCTCTTGAATCAAGAGATAATTCGCGTCTCTGGAATGATGCCCAACCAAGGGTTTAGTGACTTTGACAGACTGCAACGTGGAAGTCCTAGCCCTATTGGTTCAGACATAATGCCAAAATATAGAGGGTCAGGCCTCGGTGGCTGGAACGGACGGCCTCATGATAGATTAGGTGGTCCACAAGGGATGAATATGGAGTGGCAAGTTGCACCATCAAGCCCAAGTTCCTACATTGTGAAGAGGATATTGCGCTTGGATATTCCAGTAGATAGCTTTCCAAATTTCAATTTTGTTGGCCGGCTTCTGGGTCCTAGAGGCAATTCACTAAAGCGGGTGGAAGCTTCTACAGGTTGTCGTGTGTACATAAGAGGAAAATGTTCAATAAGAGATATTGACAAGGAATCGTTGAGGGGAAGACCGGGTTATGAACATTTGAATGATCCACTGCACATTATAATTGAGGCTGAATTGCCTGCTAATATTGTTGATATGCGGTTGAGACAGGCAAAACAAATCATAGAAGAACTTCTCAAACCTATGGATGAGTCACAAGACCACTACAAGAGGGAACAGTTGAGAGAACTAGCTATGCTGAAATCCAATTTACGAGAAGAGAGCCCTCAACCATATGGTAGTGTCTCTCCTTTCACTTCAAGCGGGATGAAGCGTGCCAAAACTGGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

280

Amino Acids

31.2

Weight (kDa)

9.38

Isoelectric Point (pI)

59.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	23 - 72	1.3e-15	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	144 - 229	7.8e-19	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	124
AccII	CGCG	2 cut(s)	131, 180
AciI	CCGC	8 cut(s)	50, 65, 104, 150, 154, 484, 646, 810
AclWI	GGATC	1 cut(s)	587
AcoI	YGGCCR	2 cut(s)	151, 448
AcsI	RAATTY	2 cut(s)	22, 433
AfaI	GTAC	2 cut(s)	86, 515
AfeI	AGCGCT	1 cut(s)	42
AfiI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
AgsI	TTSAA	5 cut(s)	163, 439, 534, 589, 807
AluBI	AGCT	5 cut(s)	97, 118, 426, 494, 740
AluI	AGCT	5 cut(s)	97, 118, 426, 494, 740
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	3 cut(s)	187, 646, 796
AlwI	GGATC	1 cut(s)	587
Ama87I	CYCGRG	1 cut(s)	119
Aor51HI	AGCGCT	1 cut(s)	42
AoxI	GGCC	5 cut(s)	122, 151, 286, 308, 448
ApoI	RAATTY	2 cut(s)	22, 433
Asp700I	GAANNNNTTC	2 cut(s)	529, 678
AspLEI	GCGC	4 cut(s)	43, 64, 133, 405
AspS9I	GGNCC	3 cut(s)	122, 329, 461
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	1 cut(s)	21
AvaI	CYCGRG	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	329, 461
BanII	GRGCYC	1 cut(s)	773
BbsI	GAAGAC	1 cut(s)	574
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	2 cut(s)	152, 373
BceAI	ACGGC	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	573
BcoDI	GTCTC	3 cut(s)	187, 646, 796
BfaI	CTAG	3 cut(s)	243, 465, 737
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	2 cut(s)	44, 65
BfuAI	ACCTGC	1 cut(s)	124
BglI	GCCNNNNNGGC	1 cut(s)	294
BisI	GCNGC	3 cut(s)	65, 151, 154
BlsI	GCNGC	3 cut(s)	66, 152, 155
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	573
Bme18I	GGWCC	2 cut(s)	329, 461
BmeT110I	CYCGRG	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	122, 329, 461
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	574
BpuMI	CCSGG	1 cut(s)	573
BsaJI	CCNNGG	2 cut(s)	202, 289
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
Bse118I	RCCGGY	2 cut(s)	31, 450
Bse1I	ACTGG	3 cut(s)	82, 416, 835
BseDI	CCNNGG	2 cut(s)	202, 289
BseGI	GGATG	4 cut(s)	76, 345, 700, 819
BseLI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
BseMII	CTCAG	2 cut(s)	32, 47
BseNI	ACTGG	3 cut(s)	82, 416, 835
BseX3I	CGGCCG	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	584
Bsh1236I	CGCG	2 cut(s)	131, 180
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	5 cut(s)	124, 153, 288, 310, 450
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	119
BsiSI	CCGG	4 cut(s)	32, 68, 451, 572
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
BsmAI	GTCTC	3 cut(s)	187, 646, 796
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	5 cut(s)	124, 153, 288, 310, 450
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	111, 773
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	1 cut(s)	592
BspACI	CCGC	8 cut(s)	50, 65, 104, 150, 154, 484, 646, 810
BspANI	GGCC	5 cut(s)	124, 153, 288, 310, 450
BspCNI	CTCAG	2 cut(s)	31, 48
BspFNI	CGCG	2 cut(s)	131, 180
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	462
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	587
BsrFI	RCCGGY	2 cut(s)	31, 450
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	3 cut(s)	82, 416, 835
BssAI	RCCGGY	2 cut(s)	31, 450
BssECI	CCNNGG	2 cut(s)	202, 289
BssMI	GATC	1 cut(s)	592
BssT1I	CCWWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	726
Bst6I	CTCTTC	2 cut(s)	386, 759
BstAUI	TGTACA	1 cut(s)	513
BstC8I	GCNNGC	3 cut(s)	452, 627, 822
BstDEI	CTNAG	2 cut(s)	18, 56
BstF5I	GGATG	4 cut(s)	76, 345, 700, 819
BstFNI	CGCG	2 cut(s)	131, 180
BstH2I	RGCGCY	2 cut(s)	44, 65
BstHHI	GCGC	4 cut(s)	43, 64, 133, 405
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	3 cut(s)	187, 646, 796
BstMBI	GATC	1 cut(s)	592
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 115, 130, 294
BstSCI	CCNGG	1 cut(s)	571
BstSFI	CTRYAG	1 cut(s)	498
BstUI	CGCG	2 cut(s)	131, 180
BstV2I	GAAGAC	1 cut(s)	574
BstZI	CGGCCG	1 cut(s)	151
BsuRI	GGCC	5 cut(s)	124, 153, 288, 310, 450
BtsCI	GGATG	4 cut(s)	76, 345, 700, 819
BtsI	GCAGTG	1 cut(s)	596
BtsIMutI	CAGTG	1 cut(s)	596
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	3 cut(s)	452, 627, 822
CciI	TCATGA	1 cut(s)	313
CciNI	GCGGCCGC	1 cut(s)	151
CfoI	GCGC	4 cut(s)	43, 64, 133, 405
Cfr10I	RCCGGY	2 cut(s)	31, 450
Cfr13I	GGNCC	3 cut(s)	122, 329, 461
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	85, 514
CviAII	CATG	1 cut(s)	314
CviQI	GTAC	2 cut(s)	85, 514
DdeI	CTNAG	2 cut(s)	18, 56
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
EaeI	YGGCCR	2 cut(s)	151, 448
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	2 cut(s)	386, 759
EarI	CTCTTC	2 cut(s)	386, 759
EciI	GGCGGA	1 cut(s)	119
EclXI	CGGCCG	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	202
Eco147I	AGGCCT	1 cut(s)	288
Eco24I	GRGCYC	1 cut(s)	773
Eco47I	GGWCC	2 cut(s)	329, 461
Eco47III	AGCGCT	1 cut(s)	42
Eco52I	CGGCCG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	773
ErhI	CCWWGG	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	1 cut(s)	317
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	313
FauI	CCCGC	2 cut(s)	477, 803
FauNDI	CATATG	1 cut(s)	781
Fnu4HI	GCNGC	3 cut(s)	65, 151, 154
FokI	GGATG	4 cut(s)	83, 352, 707, 826
FriOI	GRGCYC	1 cut(s)	773
Fsp4HI	GCNGC	3 cut(s)	65, 151, 154
FspBI	CTAG	3 cut(s)	243, 465, 737
GlaI	GCGC	4 cut(s)	42, 63, 132, 404
GluI	GCNGC	3 cut(s)	65, 151, 154
HaeII	RGCGCY	2 cut(s)	44, 65
HaeIII	GGCC	5 cut(s)	124, 153, 288, 310, 450
HapII	CCGG	4 cut(s)	32, 68, 451, 572
HgaI	GACGC	1 cut(s)	169
HhaI	GCGC	4 cut(s)	43, 64, 133, 405
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	4 cut(s)	41, 62, 131, 403
HinP1I	GCGC	4 cut(s)	41, 62, 131, 403
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	3 cut(s)	163, 554, 698
HpaII	CCGG	4 cut(s)	32, 68, 451, 572
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	3 cut(s)	76, 332, 514
Hpy188I	TCNGA	2 cut(s)	21, 259
Hpy188III	TCNNGA	4 cut(s)	160, 167, 186, 314
Hpy8I	GTNNAC	3 cut(s)	76, 332, 514
HpyCH4III	ACNGT	1 cut(s)	726
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	229, 362, 601
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 115, 130, 294
HpyF3I	CTNAG	2 cut(s)	18, 56
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	4 cut(s)	41, 62, 131, 403
KroI	GCCGGC	1 cut(s)	450
KroNI	GCCGGC	1 cut(s)	452
Kzo9I	GATC	1 cut(s)	592
LmnI	GCTCC	2 cut(s)	94, 106
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	3 cut(s)	243, 465, 737
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	212, 699
MalI	GATC	1 cut(s)	594
MboI	GATC	1 cut(s)	592
MboII	GAAGA	4 cut(s)	403, 579, 686, 776
MhlI	GDGCHC	2 cut(s)	111, 773
MluCI	AATT	8 cut(s)	22, 174, 433, 439, 472, 609, 620, 754
MlyI	GAGTC	1 cut(s)	707
MroNI	GCCGGC	1 cut(s)	450
MroXI	GAANNNNTTC	2 cut(s)	529, 678
MslI	CAYNNNNRTG	1 cut(s)	588
MspI	CCGG	4 cut(s)	32, 68, 451, 572
MspR9I	CCNGG	1 cut(s)	573
MvnI	CGCG	2 cut(s)	131, 180
MwoI	GCNNNNNNNGC	4 cut(s)	49, 115, 130, 294
NaeI	GCCGGC	1 cut(s)	452
NciI	CCSGG	1 cut(s)	573
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	1 cut(s)	592
NgoMIV	GCCGGC	1 cut(s)	450
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	462
NmuCI	GTSAC	2 cut(s)	212, 699
NotI	GCGGCCGC	1 cut(s)	151
PagI	TCATGA	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	452
PdmI	GAANNNNTTC	2 cut(s)	529, 678
PfeI	GAWTC	2 cut(s)	163, 554
PkrI	GCNGC	3 cut(s)	66, 152, 155
PleI	GAGTC	1 cut(s)	706
PpsI	GAGTC	1 cut(s)	706
PpuMI	RGGWCCY	1 cut(s)	461
PsiI	TTATAA	1 cut(s)	608
Psp5II	RGGWCCY	1 cut(s)	461
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	3 cut(s)	122, 329, 461
PspPPI	RGGWCCY	1 cut(s)	461
RsaI	GTAC	2 cut(s)	86, 515
RsaNI	GTAC	2 cut(s)	85, 514
RseI	CAYNNNNRTG	1 cut(s)	588
SatI	GCNGC	3 cut(s)	65, 151, 154
Sau3AI	GATC	1 cut(s)	592
Sau96I	GGNCC	3 cut(s)	122, 329, 461
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	2 cut(s)	111, 773
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	498
SgrAI	CRCCGGYG	1 cut(s)	31
SinI	GGWCC	2 cut(s)	329, 461
SmiMI	CAYNNNNRTG	1 cut(s)	588
Sse9I	AATT	8 cut(s)	22, 174, 433, 439, 472, 609, 620, 754
SseBI	AGGCCT	1 cut(s)	288
SsiI	CCGC	8 cut(s)	50, 65, 104, 150, 154, 484, 646, 810
SspI	AATATT	1 cut(s)	634
SspMI	CTAG	3 cut(s)	243, 465, 737
StuI	AGGCCT	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	726
TaiI	ACGT	1 cut(s)	235
TasI	AATT	8 cut(s)	22, 174, 433, 439, 472, 609, 620, 754
TatI	WGTACW	2 cut(s)	84, 513
TauI	GCSGC	3 cut(s)	67, 153, 156
TfiI	GAWTC	2 cut(s)	163, 554
TscAI	CASTG	1 cut(s)	603
TseFI	GTSAC	2 cut(s)	212, 699
Tsp45I	GTSAC	2 cut(s)	212, 699
TspDTI	ATGAA	3 cut(s)	356, 594, 830
TspGWI	ACGGA	2 cut(s)	107, 318
TspRI	CASTG	1 cut(s)	603
VpaK11BI	GGWCC	2 cut(s)	329, 461
XapI	RAATTY	2 cut(s)	22, 433
XmnI	GAANNNNTTC	2 cut(s)	529, 678
XspI	CTAG	3 cut(s)	243, 465, 737
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.