Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Reverse (-)

18489310 .. 18492935

Gene Structure 3626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15680.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCAGGCTTGTATAATCCCAACTTCTCACCTGCCAGAGCTGCTTCTCCTCAGATTAGAAGCACCCCGGATGTTGACAGTCAGTACTTGTCGGAGTTGTTGGCAGAGCATCAAAAGCTTGGACCGTTCATGCAAGTTCTTCCGATATGCAGCCGCCTCTTGAATCAAGAGATCTTACGGGTTTCTGGAATGATGTCCAACCAAGGTTTTGGCGACTTTGACAGAATGCGACATAGAAGCCCTAGTCCAATGGCTTCTTCAAACCTTATATCAAATGTTACTGGGACAGGAATGGGTGGCTGGAATGGACTTCCTCAAGAGAGATTAGGTGGACCGCATGGGATGACGATGGACTGGCAAGGTGCGCCTGCGAGCCCTAGTTCCTTCACTGTGAAGAGGATTTTACGTTTGGAAATCCCTGTAGATACTTACCCCAATTTCAATTTTGTTGGGCGACTTCTTGGACCGAGAGGTAATTCTCTGAAACGAGTTGAAGCTACGACAGGTTGTCGTGTTTACATTAGGGGCAAAGGATCTATTAAGGATCCTGACAAGGAGGAGAAGCTCCGGGGAAGACCAGGCTATGAGCACCTGAACGAACCACTCCACATCTTAATTGAAGCCGATTTACCTGCCAGTGTGGTTGACTTAAGGCTGAGACAGGCGCAAGAAATTATAGAAGAATTGCTAAAGCCTGTGGATGAGTCACAAGATTTCATTAAGAGGCAGCAGTTGCGTGAGTTGGCTTTGCTAAACTCAAATTTCAGAGAAGAAAGTCCCGGACCAAGTGGTAGTGTATCTCCTTTCAATTCAAGCGGAATGAAGCGTGCAAAAACCGGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

282

Amino Acids

31.15

Weight (kDa)

9.29

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	2 cut(s)	40, 640
AciI	CCGC	3 cut(s)	154, 335, 816
AclWI	GGATC	3 cut(s)	539, 541, 552
AcsI	RAATTY	1 cut(s)	760
AfaI	GTAC	1 cut(s)	86
AflII	CTTAAG	1 cut(s)	649
AgeI	ACCGGT	1 cut(s)	836
AgsI	TTSAA	7 cut(s)	163, 261, 442, 494, 620, 808, 813
AhdI	GACNNNNNGTC	1 cut(s)	507
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	4 cut(s)	41, 118, 497, 565
AluI	AGCT	4 cut(s)	41, 118, 497, 565
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	1 cut(s)	652
AlwI	GGATC	3 cut(s)	539, 541, 552
ApeKI	GCWGC	3 cut(s)	41, 150, 727
ApoI	RAATTY	1 cut(s)	760
AsiGI	ACCGGT	1 cut(s)	836
AspLEI	GCGC	2 cut(s)	367, 667
AspS9I	GGNCC	4 cut(s)	122, 332, 464, 782
AsuC2I	CCSGG	3 cut(s)	68, 569, 780
AsuHPI	GGTGA	1 cut(s)	21
AvaII	GGWCC	4 cut(s)	122, 332, 464, 782
BamHI	GGATCC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	377
BarI	GAAGNNNNNNTAC	2 cut(s)	612, 644
BbsI	GAAGAC	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	3 cut(s)	28, 162, 739
BccI	CCATC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	1 cut(s)	579
BcnI	CCSGG	3 cut(s)	68, 569, 780
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	2 cut(s)	243, 378
BfmI	CTRYAG	1 cut(s)	420
BfrI	CTTAAG	1 cut(s)	649
BfuAI	ACCTGC	2 cut(s)	40, 640
BglII	AGATCT	1 cut(s)	171
BisI	GCNGC	4 cut(s)	42, 151, 154, 728
BlsI	GCNGC	4 cut(s)	43, 152, 155, 729
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	4 cut(s)	68, 569, 579, 780
Bme18I	GGWCC	4 cut(s)	122, 332, 464, 782
BmeRI	GACNNNNNGTC	1 cut(s)	507
BmgT120I	GGNCC	4 cut(s)	122, 332, 464, 782
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	4 cut(s)	68, 569, 579, 780
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	580
BpuEI	CTTGAG	1 cut(s)	300
BpuMI	CCSGG	3 cut(s)	68, 569, 780
BsaJI	CCNNGG	3 cut(s)	66, 202, 568
BsaWI	WCCGGW	1 cut(s)	836
Bse118I	RCCGGY	1 cut(s)	836
Bse1I	ACTGG	3 cut(s)	286, 359, 636
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	3 cut(s)	66, 202, 568
BseGI	GGATG	3 cut(s)	76, 348, 706
BseMII	CTCAG	2 cut(s)	65, 647
BseNI	ACTGG	3 cut(s)	286, 359, 636
BseRI	GAGGAG	2 cut(s)	39, 572
BseXI	GCAGC	3 cut(s)	28, 162, 739
Bsh1285I	CGRYCG	1 cut(s)	841
BshTI	ACCGGT	1 cut(s)	836
BsiEI	CGRYCG	1 cut(s)	841
BsiHKAI	GWGCWC	1 cut(s)	591
BsiSI	CCGG	4 cut(s)	68, 568, 780, 837
BslFI	GGGAC	2 cut(s)	298, 762
BsmAI	GTCTC	1 cut(s)	652
BsmFI	GGGAC	2 cut(s)	298, 762
BsmI	GAATGC	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	377, 591
Bsp143I	GATC	3 cut(s)	171, 533, 544
BspACI	CCGC	3 cut(s)	154, 335, 816
BspCNI	CTCAG	2 cut(s)	64, 648
BspLI	GGNNCC	1 cut(s)	546
BspMI	ACCTGC	2 cut(s)	40, 640
BspPI	GGATC	3 cut(s)	539, 541, 552
BspTI	CTTAAG	1 cut(s)	649
BsrFI	RCCGGY	1 cut(s)	836
BsrI	ACTGG	3 cut(s)	286, 359, 636
BssAI	RCCGGY	1 cut(s)	836
BssECI	CCNNGG	3 cut(s)	66, 202, 568
BssMI	GATC	3 cut(s)	171, 533, 544
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	3 cut(s)	80, 126, 391
Bst6I	CTCTTC	1 cut(s)	389
BstAFI	CTTAAG	1 cut(s)	649
BstAPI	GCANNNNNTGC	1 cut(s)	733
BstC8I	GCNNGC	3 cut(s)	369, 373, 828
BstDEI	CTNAG	2 cut(s)	51, 656
BstF5I	GGATG	3 cut(s)	76, 348, 706
BstHHI	GCGC	2 cut(s)	367, 667
BstKTI	GATC	3 cut(s)	174, 536, 547
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	3 cut(s)	171, 533, 544
BstMCI	CGRYCG	1 cut(s)	841
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 115, 364, 733
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	4 cut(s)	66, 567, 577, 778
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	3 cut(s)	28, 162, 739
BstV2I	GAAGAC	1 cut(s)	580
BstX2I	RGATCY	3 cut(s)	171, 533, 544
BstXI	CCANNNNNNTGG	1 cut(s)	209
BstYI	RGATCY	3 cut(s)	171, 533, 544
BtsCI	GGATG	3 cut(s)	76, 348, 706
BtsIMutI	CAGTG	2 cut(s)	387, 643
BveI	ACCTGC	2 cut(s)	40, 640
Cac8I	GCNNGC	3 cut(s)	369, 373, 828
CfoI	GCGC	2 cut(s)	367, 667
Cfr10I	RCCGGY	1 cut(s)	836
Cfr13I	GGNCC	4 cut(s)	122, 332, 464, 782
Csp6I	GTAC	1 cut(s)	85
CspAI	ACCGGT	1 cut(s)	836
CviAII	CATG	2 cut(s)	130, 338
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	51, 656
DpnI	GATC	3 cut(s)	173, 535, 546
DpnII	GATC	3 cut(s)	171, 533, 544
DriI	GACNNNNNGTC	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	389
Eam1105I	GACNNNNNGTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	4 cut(s)	122, 332, 464, 782
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	133, 341
FaiI	YATR	8 cut(s)	15, 131, 148, 234, 269, 339, 585, 677
FaqI	GGGAC	2 cut(s)	298, 762
FatI	CATG	2 cut(s)	129, 337
Fnu4HI	GCNGC	4 cut(s)	42, 151, 154, 728
FokI	GGATG	3 cut(s)	83, 355, 713
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	4 cut(s)	42, 151, 154, 728
FspBI	CTAG	2 cut(s)	243, 378
GlaI	GCGC	2 cut(s)	366, 666
GluI	GCNGC	4 cut(s)	42, 151, 154, 728
HapII	CCGG	4 cut(s)	68, 568, 780, 837
HhaI	GCGC	2 cut(s)	367, 667
Hin1II	CATG	2 cut(s)	133, 341
Hin6I	GCGC	2 cut(s)	365, 665
HinP1I	GCGC	2 cut(s)	365, 665
HincII	GTYRAC	2 cut(s)	76, 646
HindII	GTYRAC	2 cut(s)	76, 646
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	2 cut(s)	163, 704
HpaII	CCGG	4 cut(s)	68, 568, 780, 837
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	4 cut(s)	76, 332, 517, 646
Hpy188I	TCNGA	5 cut(s)	54, 94, 144, 483, 767
Hpy188III	TCNNGA	5 cut(s)	160, 167, 186, 317, 548
Hpy8I	GTNNAC	4 cut(s)	76, 332, 517, 646
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	3 cut(s)	80, 126, 391
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	3 cut(s)	133, 150, 830
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 115, 364, 733
HpyF3I	CTNAG	2 cut(s)	51, 656
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	2 cut(s)	133, 341
HspAI	GCGC	2 cut(s)	365, 665
Kzo9I	GATC	3 cut(s)	171, 533, 544
LmnI	GCTCC	1 cut(s)	570
Lsp1109I	GCAGC	3 cut(s)	28, 162, 739
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	243, 378
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	2 cut(s)	277, 705
MalI	GATC	3 cut(s)	173, 535, 546
MboI	GATC	3 cut(s)	171, 533, 544
MboII	GAAGA	6 cut(s)	131, 249, 406, 585, 692, 782
MflI	RGATCY	3 cut(s)	171, 533, 544
MhlI	GDGCHC	2 cut(s)	377, 591
MluCI	AATT	8 cut(s)	436, 442, 475, 615, 672, 683, 760, 808
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	2 cut(s)	72, 222
MnlI	CCTC	7 cut(s)	60, 167, 324, 390, 464, 550, 717
MseI	TTAA	4 cut(s)	540, 614, 650, 720
MspCI	CTTAAG	1 cut(s)	649
MspI	CCGG	4 cut(s)	68, 568, 780, 837
MspR9I	CCNGG	4 cut(s)	68, 569, 579, 780
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	4 cut(s)	41, 115, 364, 733
NciI	CCSGG	3 cut(s)	68, 569, 780
NdeII	GATC	3 cut(s)	171, 533, 544
NlaIII	CATG	2 cut(s)	133, 341
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	1 cut(s)	705
PaqCI	CACCTGC	1 cut(s)	40
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	778
PinAI	ACCGGT	1 cut(s)	836
PkrI	GCNGC	4 cut(s)	43, 152, 155, 729
PleI	GAGTC	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	712
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	4 cut(s)	122, 332, 464, 782
PsuI	RGATCY	3 cut(s)	171, 533, 544
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	4 cut(s)	540, 614, 650, 720
SatI	GCNGC	4 cut(s)	42, 151, 154, 728
Sau3AI	GATC	3 cut(s)	171, 533, 544
Sau96I	GGNCC	4 cut(s)	122, 332, 464, 782
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	4 cut(s)	68, 569, 579, 780
SduI	GDGCHC	2 cut(s)	377, 591
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	4 cut(s)	122, 332, 464, 782
SmlI	CTYRAG	2 cut(s)	315, 649
SmoI	CTYRAG	2 cut(s)	315, 649
Sse9I	AATT	8 cut(s)	436, 442, 475, 615, 672, 683, 760, 808
SsiI	CCGC	3 cut(s)	154, 335, 816
SspMI	CTAG	2 cut(s)	243, 378
StyD4I	CCNGG	4 cut(s)	66, 567, 577, 778
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	3 cut(s)	80, 126, 391
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	841
TaqII	GACCGA	1 cut(s)	481
TasI	AATT	8 cut(s)	436, 442, 475, 615, 672, 683, 760, 808
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	4 cut(s)	540, 614, 650, 720
Tru9I	TTAA	4 cut(s)	540, 614, 650, 720
TscAI	CASTG	2 cut(s)	394, 643
TseFI	GTSAC	1 cut(s)	705
TseI	GCWGC	3 cut(s)	41, 150, 727
Tsp45I	GTSAC	1 cut(s)	705
TspDTI	ATGAA	3 cut(s)	118, 706, 836
TspRI	CASTG	2 cut(s)	394, 643
Vha464I	CTTAAG	1 cut(s)	649
VpaK11BI	GGWCC	4 cut(s)	122, 332, 464, 782
XapI	RAATTY	1 cut(s)	760
XspI	CTAG	2 cut(s)	243, 378
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.