Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Forward (+)

8090676 .. 8094340

Gene Structure 3665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG097300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCAGGGTTGTATAATCCCAACTTCTCTCCTGCCAGAGCTGCCTCTCCTCAGATTAGAAGCACTCCAGATGTTGACAGTCAGTACTTGTCAGAGCTGCTAGCAGAGCATCAAAAGCTTGGACCTTTCATGCAAGTGCTTCCGATATGTAGCCGACTCTTGAATCAAGAGATTCTACGGGTTTCTGGAATGATGTCCAACCAAGGTTTCGGCGACTTCGACAGAATGCGACATAGAAGTCCTAGTCCAATGGCTTCTTCAAACCTTATGTCAAGTGTTACTGGGACAGGATTGGGTGGTTGGAATGGACTTCCTCAAGAGAGATTAAGTGCACCTCATGGGATGACAATGGACTGGCAAGGTGCACCTGCGAGCCCTAGTTCGTACACAGTGAAGAGGATTTTACGCTTGGAAATTCCTGTAGACACTTACCCCAACTTCAATTTTGTTGGGCGACTTCTTGGACCCAGAGGTAATTCTTTGAAACGAGTTGAAGCTACTACGGGGTGTCGTGTATACATTAGAGGCAAAGGATCTATCAAGGATCCAGACAAGGAGGACAAGCTAAGGGGAAGACCAGGCTATGAACATCTGAGCGAACCACTCCACATCTTAATTGAAGCCGATTTACCTGCCAGTGTTGTTGATATAAGGCTCAGACAGGCCCAAGAAATTATCGAAGAACTGCTCAAACCAGTGGACGAGTCACAAGATTATATTAAGAGGCAGCAATTGCGGGAGTTGGCTTTGATAAATTCAAATTTCAGAGAAGAAAGTCCTGGGCCAAGTGGCAGCGTATCTCCTTTCAATTCAAGTGGAATGAAACGTGCCAAAACAGGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

281

Amino Acids

31.16

Weight (kDa)

9.25

Isoelectric Point (pI)

59.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	23 - 72	3.2e-16	Homodimerisation region of STAR domain protein
KH-I_KHDC4-BBP	PF22675	144 - 231	1.5e-21	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	376
AasI	GACNNNNNNGTC	1 cut(s)	237
Acc36I	ACCTGC	2 cut(s)	376, 640
AccI	GTMKAC	2 cut(s)	423, 516
AciI	CCGC	1 cut(s)	736
AclWI	GGATC	3 cut(s)	539, 541, 552
AcsI	RAATTY	3 cut(s)	414, 754, 760
AfaI	GTAC	2 cut(s)	86, 386
AgsI	TTSAA	9 cut(s)	163, 261, 442, 484, 494, 620, 759, 808, 813
AjnI	CCWGG	2 cut(s)	577, 778
AjuI	GAANNNNNNNTTGG	4 cut(s)	191, 223, 241, 273
AluBI	AGCT	5 cut(s)	41, 97, 118, 497, 565
AluI	AGCT	5 cut(s)	41, 97, 118, 497, 565
Alw21I	GWGCWC	2 cut(s)	334, 367
Alw44I	GTGCAC	2 cut(s)	330, 363
AlwI	GGATC	3 cut(s)	539, 541, 552
AoxI	GGCC	2 cut(s)	663, 782
ApaLI	GTGCAC	2 cut(s)	330, 363
ApeKI	GCWGC	4 cut(s)	41, 97, 727, 792
ApoI	RAATTY	3 cut(s)	414, 754, 760
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
AspS9I	GGNCC	4 cut(s)	122, 464, 664, 782
AsuNHI	GCTAGC	1 cut(s)	100
AvaII	GGWCC	2 cut(s)	122, 464
BaeGI	GKGCMC	2 cut(s)	334, 367
BamHI	GGATCC	1 cut(s)	544
BanII	GRGCYC	1 cut(s)	377
BarI	GAAGNNNNNNTAC	2 cut(s)	612, 644
BbsI	GAAGAC	1 cut(s)	580
Bbv12I	GWGCWC	2 cut(s)	334, 367
BbvI	GCAGC	4 cut(s)	28, 84, 739, 804
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	2 cut(s)	579, 780
BfaI	CTAG	3 cut(s)	101, 243, 378
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	2 cut(s)	376, 640
BisI	GCNGC	4 cut(s)	42, 98, 728, 793
BlsI	GCNGC	4 cut(s)	43, 99, 729, 794
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	579, 780
Bme18I	GGWCC	2 cut(s)	122, 464
BmgT120I	GGNCC	4 cut(s)	122, 464, 664, 782
BmiI	GGNNCC	2 cut(s)	466, 546
BmrFI	CCNGG	2 cut(s)	579, 780
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	118
BmtI	GCTAGC	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	580
BpmI	CTGGAG	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	566
BpuEI	CTTGAG	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	202, 779
Bse1I	ACTGG	4 cut(s)	286, 359, 636, 695
BseBI	CCWGG	2 cut(s)	579, 780
BseDI	CCNNGG	2 cut(s)	202, 779
BseGI	GGATG	1 cut(s)	348
BseMII	CTCAG	3 cut(s)	65, 584, 670
BseNI	ACTGG	4 cut(s)	286, 359, 636, 695
BseRI	GAGGAG	1 cut(s)	39
BseSI	GKGCMC	2 cut(s)	334, 367
BseXI	GCAGC	4 cut(s)	28, 84, 739, 804
BshFI	GGCC	2 cut(s)	665, 784
BsiHKAI	GWGCWC	2 cut(s)	334, 367
BslFI	GGGAC	1 cut(s)	298
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	665, 784
Bsp1286I	GDGCHC	3 cut(s)	334, 367, 377
Bsp143I	GATC	2 cut(s)	533, 544
BspACI	CCGC	1 cut(s)	736
BspANI	GGCC	2 cut(s)	665, 784
BspCNI	CTCAG	3 cut(s)	64, 585, 669
BspLI	GGNNCC	2 cut(s)	466, 546
BspMI	ACCTGC	2 cut(s)	376, 640
BspOI	GCTAGC	1 cut(s)	104
BspPI	GGATC	3 cut(s)	539, 541, 552
BsrI	ACTGG	4 cut(s)	286, 359, 636, 695
BssECI	CCNNGG	2 cut(s)	202, 779
BssMI	GATC	2 cut(s)	533, 544
BssNAI	GTATAC	1 cut(s)	517
BssT1I	CCWWGG	1 cut(s)	202
Bst1107I	GTATAC	1 cut(s)	517
Bst2UI	CCWGG	2 cut(s)	579, 780
Bst4CI	ACNGT	2 cut(s)	80, 391
Bst6I	CTCTTC	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	733
BstC8I	GCNNGC	2 cut(s)	102, 373
BstDEI	CTNAG	4 cut(s)	51, 566, 593, 656
BstF5I	GGATG	1 cut(s)	348
BstKTI	GATC	2 cut(s)	536, 547
BstMBI	GATC	2 cut(s)	533, 544
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 106, 115, 733
BstNI	CCWGG	2 cut(s)	579, 780
BstSCI	CCNGG	2 cut(s)	577, 778
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	2 cut(s)	334, 367
BstV1I	GCAGC	4 cut(s)	28, 84, 739, 804
BstV2I	GAAGAC	1 cut(s)	580
BstX2I	RGATCY	2 cut(s)	533, 544
BstYI	RGATCY	2 cut(s)	533, 544
BstZ17I	GTATAC	1 cut(s)	517
BsuRI	GGCC	2 cut(s)	665, 784
BtsCI	GGATG	1 cut(s)	348
BtsIMutI	CAGTG	3 cut(s)	396, 643, 702
BveI	ACCTGC	2 cut(s)	376, 640
Cac8I	GCNNGC	2 cut(s)	102, 373
Cfr13I	GGNCC	4 cut(s)	122, 464, 664, 782
Csp6I	GTAC	2 cut(s)	85, 385
CspCI	CAANNNNNGTGG	2 cut(s)	796, 831
CviAII	CATG	2 cut(s)	130, 338
CviQI	GTAC	2 cut(s)	85, 385
DdeI	CTNAG	4 cut(s)	51, 566, 593, 656
DpnI	GATC	2 cut(s)	535, 546
DpnII	GATC	2 cut(s)	533, 544
DrdI	GACNNNNNNGTC	1 cut(s)	237
DseDI	GACNNNNNNGTC	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	122, 464
EcoRII	CCWGG	2 cut(s)	577, 778
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	202
FaeI	CATG	2 cut(s)	133, 341
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	2 cut(s)	129, 337
FauI	CCCGC	1 cut(s)	729
FblI	GTMKAC	2 cut(s)	423, 516
Fnu4HI	GCNGC	4 cut(s)	42, 98, 728, 793
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	4 cut(s)	42, 98, 728, 793
FspBI	CTAG	3 cut(s)	101, 243, 378
GluI	GCNGC	4 cut(s)	42, 98, 728, 793
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	665, 784
Hin1II	CATG	2 cut(s)	133, 341
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	4 cut(s)	156, 163, 172, 704
Hpy166II	GTNNAC	7 cut(s)	76, 332, 365, 387, 424, 517, 700
Hpy188I	TCNGA	6 cut(s)	54, 94, 144, 594, 659, 767
Hpy188III	TCNNGA	6 cut(s)	68, 160, 167, 186, 317, 548
Hpy8I	GTNNAC	7 cut(s)	76, 332, 365, 387, 424, 517, 700
HpyCH4III	ACNGT	2 cut(s)	80, 391
HpyCH4IV	ACGT	1 cut(s)	826
HpyCH4V	TGCA	3 cut(s)	133, 332, 365
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 106, 115, 733
HpyF3I	CTNAG	4 cut(s)	51, 566, 593, 656
HpySE526I	ACGT	1 cut(s)	826
Hsp92II	CATG	2 cut(s)	133, 341
Kzo9I	GATC	2 cut(s)	533, 544
Lsp1109I	GCAGC	4 cut(s)	28, 84, 739, 804
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	3 cut(s)	101, 243, 378
MaeII	ACGT	1 cut(s)	826
MaeIII	GTNAC	2 cut(s)	277, 705
MalI	GATC	2 cut(s)	535, 546
MboI	GATC	2 cut(s)	533, 544
MboII	GAAGA	5 cut(s)	249, 406, 585, 692, 782
MfeI	CAATTG	1 cut(s)	731
MflI	RGATCY	2 cut(s)	533, 544
MhlI	GDGCHC	3 cut(s)	334, 367, 377
MluCI	AATT	9 cut(s)	414, 442, 475, 615, 672, 731, 754, 760, 808
MlyI	GAGTC	2 cut(s)	150, 713
MmeI	TCCRAC	2 cut(s)	222, 281
MnlI	CCTC	9 cut(s)	55, 60, 324, 345, 390, 464, 518, 550, 717
MseI	TTAA	3 cut(s)	326, 614, 720
MslI	CAYNNNNRTG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	579, 780
MunI	CAATTG	1 cut(s)	731
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	2 cut(s)	579, 780
MwoI	GCNNNNNNNGC	4 cut(s)	41, 106, 115, 733
NdeII	GATC	2 cut(s)	533, 544
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	133, 341
NlaIV	GGNNCC	2 cut(s)	466, 546
NmuCI	GTSAC	1 cut(s)	705
PaqCI	CACCTGC	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	163, 172
PkrI	GCNGC	4 cut(s)	43, 99, 729, 794
PleI	GAGTC	2 cut(s)	150, 712
PpsI	GAGTC	2 cut(s)	150, 712
Psp6I	CCWGG	2 cut(s)	577, 778
PspGI	CCWGG	2 cut(s)	577, 778
PspN4I	GGNNCC	2 cut(s)	466, 546
PspPI	GGNCC	4 cut(s)	122, 464, 664, 782
PsuI	RGATCY	2 cut(s)	533, 544
RsaI	GTAC	2 cut(s)	86, 386
RsaNI	GTAC	2 cut(s)	85, 385
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	3 cut(s)	326, 614, 720
SatI	GCNGC	4 cut(s)	42, 98, 728, 793
Sau3AI	GATC	2 cut(s)	533, 544
Sau96I	GGNCC	4 cut(s)	122, 464, 664, 782
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	150, 713
ScrFI	CCNGG	2 cut(s)	579, 780
SduI	GDGCHC	3 cut(s)	334, 367, 377
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	2 cut(s)	122, 464
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	9 cut(s)	414, 442, 475, 615, 672, 731, 754, 760, 808
SsiI	CCGC	1 cut(s)	736
SspMI	CTAG	3 cut(s)	101, 243, 378
StyD4I	CCNGG	2 cut(s)	577, 778
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	80, 391
TaiI	ACGT	1 cut(s)	829
TaqI	TCGA	3 cut(s)	219, 678, 841
TasI	AATT	9 cut(s)	414, 442, 475, 615, 672, 731, 754, 760, 808
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	163, 172
Tru1I	TTAA	3 cut(s)	326, 614, 720
Tru9I	TTAA	3 cut(s)	326, 614, 720
TscAI	CASTG	3 cut(s)	396, 643, 702
TseFI	GTSAC	1 cut(s)	705
TseI	GCWGC	4 cut(s)	41, 97, 727, 792
Tsp45I	GTSAC	1 cut(s)	705
TspDTI	ATGAA	3 cut(s)	118, 600, 836
TspRI	CASTG	3 cut(s)	396, 643, 702
VneI	GTGCAC	2 cut(s)	330, 363
VpaK11BI	GGWCC	2 cut(s)	122, 464
XapI	RAATTY	3 cut(s)	414, 754, 760
XmiI	GTMKAC	2 cut(s)	423, 516
XspI	CTAG	3 cut(s)	101, 243, 378
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.