Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Reverse (-)

20274453 .. 20277918

Gene Structure 3466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g17970.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCAGGCTTGTATAATCCCAACTTCTCACCTGCCAGAGCTGCTTCTCCTCAGATTAGAAGCGCCCCAGATGTTGACAGTCAGTACTTGTCGGATTTGTTGGCAGAGCATCAAAAGCTTGGACCGTTCATGCAAGTTCTTCCGATATGCAGCCGCCTTTTGAATCAAGAGATTTTACGGGTTTCTGGAATGATGTCCAACCAAGGTTTTGGCGACTTTGACAGAATGCGACATAGAAGCCCTAGTCCAATGGCTTCTTCAAATCTTATATCAAATGTTACTGGGACAGGAATGGGTGGCTGGAATGGACTTCCTCCAGAGAGATTAGGTGGACCCCATGGGATGACGATGGACTGGCAAGGTGCACCCGCGAGCCCTAGTTCATACACTGTGAAGAGGATTTTACGTTTGGAAATCCCTGTAGATACTTACCCCAATTTCAATTTTGTTGGGCGGCTTCTTGGACCGAGAGGTAATTCTCTGAAACGGGTTGAAGCTACGACAGGTTGTCGTGTATACATTAGGGGAAAAGGATCTATTAAGGACCCAGACAAGGAGGAGAAGCTCAGGGGAAGGCCAGGCTATGAGCACCTGAACGAACCACTCCACATCTTAATTGAAGCCGATTTACCTGCCAATGTGGTTGACTTAAGGCTGAGACAGGCGCAAGAAATCATAGAAGAATTGCTCAAACCTGTGGATGAATCACAAGATTTTATTAAGAGGCAGCAGTTGCGTGAGTTGGCTCTGCTAAACTCAAATTTCAGAGAAGAAAGTCCTGGACCAAGTGGTAGTGTATCTCCTTTCAATTCAAGCGGAATGAAGCGTGCAAAAACCGGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

282

Amino Acids

31.12

Weight (kDa)

9.27

Isoelectric Point (pI)

57.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	2 cut(s)	40, 640
AccI	GTMKAC	1 cut(s)	516
AccII	CGCG	1 cut(s)	371
AciI	CCGC	4 cut(s)	154, 369, 454, 816
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	1 cut(s)	838
AcsI	RAATTY	1 cut(s)	760
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	553
AflII	CTTAAG	1 cut(s)	649
AgsI	TTSAA	7 cut(s)	163, 261, 442, 494, 620, 808, 813
AhdI	GACNNNNNGTC	1 cut(s)	507
AjnI	CCWGG	2 cut(s)	577, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	4 cut(s)	41, 118, 497, 565
AluI	AGCT	4 cut(s)	41, 118, 497, 565
Alw21I	GWGCWC	2 cut(s)	367, 591
Alw26I	GTCTC	1 cut(s)	652
Alw44I	GTGCAC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	541
AoxI	GGCC	2 cut(s)	575, 838
ApaLI	GTGCAC	1 cut(s)	363
ApeKI	GCWGC	3 cut(s)	41, 150, 727
ApoI	RAATTY	1 cut(s)	760
AspLEI	GCGC	2 cut(s)	65, 667
AspS9I	GGNCC	5 cut(s)	122, 332, 464, 544, 782
AsuHPI	GGTGA	1 cut(s)	21
AvaII	GGWCC	5 cut(s)	122, 332, 464, 544, 782
BaeGI	GKGCMC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	377
BarI	GAAGNNNNNNTAC	2 cut(s)	612, 644
Bbv12I	GWGCWC	2 cut(s)	367, 591
BbvI	GCAGC	3 cut(s)	28, 162, 739
BccI	CCATC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	614, 648
BciT130I	CCWGG	2 cut(s)	579, 780
BcoDI	GTCTC	1 cut(s)	652
BfaI	CTAG	2 cut(s)	243, 378
BfmI	CTRYAG	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	649
BfuAI	ACCTGC	2 cut(s)	40, 640
BisI	GCNGC	5 cut(s)	42, 151, 154, 455, 728
BlsI	GCNGC	5 cut(s)	43, 152, 155, 456, 729
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	579, 780
Bme18I	GGWCC	5 cut(s)	122, 332, 464, 544, 782
BmeRI	GACNNNNNGTC	1 cut(s)	507
BmgT120I	GGNCC	5 cut(s)	122, 332, 464, 544, 782
BmiI	GGNNCC	2 cut(s)	334, 546
BmrFI	CCNGG	2 cut(s)	579, 780
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	118
BmuI	ACTGGG	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	566
BsaJI	CCNNGG	2 cut(s)	202, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	553
Bse118I	RCCGGY	1 cut(s)	836
Bse1I	ACTGG	2 cut(s)	286, 359
BseBI	CCWGG	2 cut(s)	579, 780
BseDI	CCNNGG	2 cut(s)	202, 337
BseGI	GGATG	2 cut(s)	348, 706
BseLI	CCNNNNNNNGG	1 cut(s)	553
BseMII	CTCAG	3 cut(s)	65, 580, 647
BseNI	ACTGG	2 cut(s)	286, 359
BseRI	GAGGAG	2 cut(s)	39, 572
BseSI	GKGCMC	1 cut(s)	367
BseX3I	CGGCCG	1 cut(s)	838
BseXI	GCAGC	3 cut(s)	28, 162, 739
Bsh1236I	CGCG	1 cut(s)	371
Bsh1285I	CGRYCG	1 cut(s)	841
BshFI	GGCC	2 cut(s)	577, 840
BsiEI	CGRYCG	1 cut(s)	841
BsiHKAI	GWGCWC	2 cut(s)	367, 591
BsiSI	CCGG	1 cut(s)	837
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	553
BsmAI	GTCTC	1 cut(s)	652
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	2 cut(s)	577, 840
Bsp1286I	GDGCHC	3 cut(s)	367, 377, 591
Bsp143I	GATC	1 cut(s)	533
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	4 cut(s)	154, 369, 454, 816
BspANI	GGCC	2 cut(s)	577, 840
BspCNI	CTCAG	3 cut(s)	64, 579, 648
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	2 cut(s)	334, 546
BspMI	ACCTGC	2 cut(s)	40, 640
BspPI	GGATC	1 cut(s)	541
BspTI	CTTAAG	1 cut(s)	649
BsrFI	RCCGGY	1 cut(s)	836
BsrI	ACTGG	2 cut(s)	286, 359
BssAI	RCCGGY	1 cut(s)	836
BssECI	CCNNGG	2 cut(s)	202, 337
BssMI	GATC	1 cut(s)	533
BssNAI	GTATAC	1 cut(s)	517
BssT1I	CCWWGG	2 cut(s)	202, 337
Bst1107I	GTATAC	1 cut(s)	517
Bst2UI	CCWGG	2 cut(s)	579, 780
Bst4CI	ACNGT	3 cut(s)	80, 126, 391
Bst6I	CTCTTC	1 cut(s)	389
BstAFI	CTTAAG	1 cut(s)	649
BstAPI	GCANNNNNTGC	1 cut(s)	733
BstC8I	GCNNGC	2 cut(s)	373, 828
BstDEI	CTNAG	3 cut(s)	51, 566, 656
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	2 cut(s)	348, 706
BstFNI	CGCG	1 cut(s)	371
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	65, 667
BstKTI	GATC	1 cut(s)	536
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	1 cut(s)	533
BstMCI	CGRYCG	1 cut(s)	841
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 115, 733
BstNI	CCWGG	2 cut(s)	579, 780
BstSCI	CCNGG	2 cut(s)	577, 778
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	367
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	3 cut(s)	28, 162, 739
BstX2I	RGATCY	1 cut(s)	533
BstXI	CCANNNNNNTGG	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	533
BstZ17I	GTATAC	1 cut(s)	517
BstZI	CGGCCG	1 cut(s)	838
BsuRI	GGCC	2 cut(s)	577, 840
BtgI	CCRYGG	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	348, 706
BtsIMutI	CAGTG	1 cut(s)	387
BveI	ACCTGC	2 cut(s)	40, 640
Cac8I	GCNNGC	2 cut(s)	373, 828
CfoI	GCGC	2 cut(s)	65, 667
Cfr10I	RCCGGY	1 cut(s)	836
Cfr13I	GGNCC	5 cut(s)	122, 332, 464, 544, 782
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	130, 338
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	3 cut(s)	51, 566, 656
DpnI	GATC	1 cut(s)	535
DpnII	GATC	1 cut(s)	533
DriI	GACNNNNNGTC	1 cut(s)	507
EaeI	YGGCCR	1 cut(s)	838
EagI	CGGCCG	1 cut(s)	838
Eam1104I	CTCTTC	1 cut(s)	389
Eam1105I	GACNNNNNGTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	389
EclXI	CGGCCG	1 cut(s)	838
Eco130I	CCWWGG	2 cut(s)	202, 337
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	5 cut(s)	122, 332, 464, 544, 782
Eco52I	CGGCCG	1 cut(s)	838
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	577, 778
EcoT14I	CCWWGG	2 cut(s)	202, 337
EcoT38I	GRGCYC	1 cut(s)	377
ErhI	CCWWGG	2 cut(s)	202, 337
FaeI	CATG	2 cut(s)	133, 341
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	2 cut(s)	129, 337
FauI	CCCGC	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	5 cut(s)	42, 151, 154, 455, 728
FokI	GGATG	2 cut(s)	355, 713
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	5 cut(s)	42, 151, 154, 455, 728
FspBI	CTAG	2 cut(s)	243, 378
GlaI	GCGC	2 cut(s)	64, 666
GluI	GCNGC	5 cut(s)	42, 151, 154, 455, 728
GsuI	CTGGAG	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	577, 840
HapII	CCGG	1 cut(s)	837
HhaI	GCGC	2 cut(s)	65, 667
Hin1II	CATG	2 cut(s)	133, 341
Hin6I	GCGC	2 cut(s)	63, 665
HinP1I	GCGC	2 cut(s)	63, 665
HincII	GTYRAC	2 cut(s)	76, 646
HindII	GTYRAC	2 cut(s)	76, 646
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	2 cut(s)	163, 704
HpaII	CCGG	1 cut(s)	837
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	5 cut(s)	76, 332, 365, 517, 646
Hpy188I	TCNGA	5 cut(s)	54, 94, 144, 483, 767
Hpy188III	TCNNGA	3 cut(s)	167, 186, 317
Hpy8I	GTNNAC	5 cut(s)	76, 332, 365, 517, 646
HpyAV	CCTTC	1 cut(s)	567
HpyCH4III	ACNGT	3 cut(s)	80, 126, 391
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	4 cut(s)	133, 150, 365, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 115, 733
HpyF3I	CTNAG	3 cut(s)	51, 566, 656
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	2 cut(s)	133, 341
HspAI	GCGC	2 cut(s)	63, 665
Kzo9I	GATC	1 cut(s)	533
Lsp1109I	GCAGC	3 cut(s)	28, 162, 739
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	243, 378
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	1 cut(s)	535
MboI	GATC	1 cut(s)	533
MboII	GAAGA	5 cut(s)	131, 249, 406, 692, 782
MflI	RGATCY	1 cut(s)	533
MhlI	GDGCHC	3 cut(s)	367, 377, 591
MluCI	AATT	7 cut(s)	436, 442, 475, 615, 683, 760, 808
MmeI	TCCRAC	2 cut(s)	72, 222
MnlI	CCTC	6 cut(s)	60, 324, 390, 464, 550, 717
MseI	TTAA	4 cut(s)	540, 614, 650, 720
MspCI	CTTAAG	1 cut(s)	649
MspI	CCGG	1 cut(s)	837
MspR9I	CCNGG	2 cut(s)	579, 780
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	2 cut(s)	579, 780
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	41, 115, 733
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	1 cut(s)	533
NlaIII	CATG	2 cut(s)	133, 341
NlaIV	GGNNCC	2 cut(s)	334, 546
PaqCI	CACCTGC	1 cut(s)	40
PctI	GAATGC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	163, 704
PfoI	TCCNGGA	1 cut(s)	778
PkrI	GCNGC	5 cut(s)	43, 152, 155, 456, 729
PpuMI	RGGWCCY	1 cut(s)	544
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	2 cut(s)	577, 778
PspGI	CCWGG	2 cut(s)	577, 778
PspN4I	GGNNCC	2 cut(s)	334, 546
PspPI	GGNCC	5 cut(s)	122, 332, 464, 544, 782
PspPPI	RGGWCCY	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	4 cut(s)	540, 614, 650, 720
SatI	GCNGC	5 cut(s)	42, 151, 154, 455, 728
Sau3AI	GATC	1 cut(s)	533
Sau96I	GGNCC	5 cut(s)	122, 332, 464, 544, 782
ScaI	AGTACT	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	579, 780
SduI	GDGCHC	3 cut(s)	367, 377, 591
SfaNI	GCATC	1 cut(s)	118
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	5 cut(s)	122, 332, 464, 544, 782
SmlI	CTYRAG	1 cut(s)	649
SmoI	CTYRAG	1 cut(s)	649
Sse9I	AATT	7 cut(s)	436, 442, 475, 615, 683, 760, 808
SsiI	CCGC	4 cut(s)	154, 369, 454, 816
SspMI	CTAG	2 cut(s)	243, 378
StyD4I	CCNGG	2 cut(s)	577, 778
StyI	CCWWGG	2 cut(s)	202, 337
TaaI	ACNGT	3 cut(s)	80, 126, 391
TaiI	ACGT	1 cut(s)	409
TaqII	GACCGA	1 cut(s)	481
TasI	AATT	7 cut(s)	436, 442, 475, 615, 683, 760, 808
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	2 cut(s)	156, 457
TfiI	GAWTC	2 cut(s)	163, 704
Tru1I	TTAA	4 cut(s)	540, 614, 650, 720
Tru9I	TTAA	4 cut(s)	540, 614, 650, 720
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	3 cut(s)	41, 150, 727
TspDTI	ATGAA	4 cut(s)	118, 372, 717, 836
TspRI	CASTG	1 cut(s)	394
Vha464I	CTTAAG	1 cut(s)	649
VneI	GTGCAC	1 cut(s)	363
VpaK11BI	GGWCC	5 cut(s)	122, 332, 464, 544, 782
XapI	RAATTY	1 cut(s)	760
XmiI	GTMKAC	1 cut(s)	516
XspI	CTAG	2 cut(s)	243, 378
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.