Rmu_sc0000470.1_g000004

KH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000470.1
Physical Location & Seq
Reverse (-)
20070 .. 26166
6097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000470.1_g000004.1.cds

Sequence Viewer

Length: 1386 bp
atgatgcgaatattcaaagacggaggagaacgccaaggcccaccgtcctcaacgacgcgtgccttcacatggaggatccggggccacctgcggcgtaccggtcccagctcccatgacacccgcaacgcctatgattgggagcgtaccccccacgccctccataaagcgcgtcacgggatcggcgctgtcagtctcaatgtgagggattcaatgtcaggctcgtatgcccagaatttctcgccggcgagggcgctctcgccgcacctgagaaccccgccggatgtggacagtcagtacttgactgagctcttggccgagcaccaaaagcttggaccttttgcccaagtcgtgcccatatgtggccggctcttgaatcaagagatattacgagtttctggaatgatgcccaaccaagggtatagtgattttgacagaatgcaacgtggaagccctagccctattggttcagacttaatgccaaattatagagggtcaagcatggggggatggaatggccggcctcacgatagattaggtggtccacaaggaatgaatatggagtggcaagtagcaccatcaagcccaagttcctacattgtcaagagaatactgcggttggatatcccagtcgatagctttccaaatttcaattttgtgggccggcttctgggtcccagaggcaattcactgaagcgggtggaagcttccacaggttgtcgtgtgtatataagaggaaaatgttcaataagagatatagacaaggaggagtctttgaggggtagaccagggtatgagcatttgaatgatccactgcacattataatcgaggctgaattacctgctaatattgtcgatatgcggttgagacaggcaaaacaaatcatagaagaacttctcaaacctatggatgagtcacaagaccactacaagagggagcagttgagagaactagctatgctaaaatccaatttaagagaagaaagtcctcaaccatatgggagtgtctcccctttcacttccagtgggatgaagcgtgccaaaactggtctgacgagtcaccaagacctctacaagagggagcagttgagagaacttgctatgctaagtgaagaagtccaaccatatgggagtgtctcccctttcacttccagtgggatgaagcgtgccaaaactggtctgacgagtcaccaagacctctacaagagggagcagttgagagaacttgctatgcaaatatccaatttaagtgaagaagtccaaccatatgggagtgtcccccctttcacttccagtgggatgaagcgtgccaaaactggtctgcaagtctgtaacagttcacttaacttgatgatcttcactcggttcttcctccagtacaaatcttga

Protein Analysis

461

Amino Acids

52.06

Weight (kDa)

9.69

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 821
AarI CACCTGC 1 cut(s) 96
Acc36I ACCTGC 2 cut(s) 96, 847
AccI GTMKAC 1 cut(s) 781
AccII CGCG 2 cut(s) 58, 169
AciI CCGC 7 cut(s) 91, 121, 260, 275, 613, 694, 859
AclWI GGATC 4 cut(s) 70, 83, 185, 800
AcoI YGGCCR 3 cut(s) 312, 361, 514
AcsI RAATTY 2 cut(s) 232, 643
AcuI CTGAAG 1 cut(s) 710
AfaI GTAC 4 cut(s) 97, 145, 296, 1376
AfiI CCNNNNNNNGG 6 cut(s) 69, 135, 359, 413, 414, 667
AflIII ACRYGT 1 cut(s) 56
AgeI ACCGGT 1 cut(s) 98
AgsI TTSAA 6 cut(s) 16, 210, 373, 649, 744, 802
AjnI CCWGG 1 cut(s) 784
AluBI AGCT 6 cut(s) 108, 307, 328, 636, 704, 953
AluI AGCT 6 cut(s) 108, 307, 328, 636, 704, 953
Alw21I GWGCWC 2 cut(s) 309, 321
Alw26I GTCTC 4 cut(s) 197, 859, 1009, 1138
AlwI GGATC 4 cut(s) 70, 83, 185, 800
AoxI GGCC 7 cut(s) 37, 82, 312, 361, 514, 518, 658
ApoI RAATTY 2 cut(s) 232, 643
AsiGI ACCGGT 1 cut(s) 98
Asp700I GAANNNNTTC 2 cut(s) 739, 891
AspLEI GCGC 3 cut(s) 169, 185, 253
AspS9I GGNCC 7 cut(s) 38, 82, 101, 332, 539, 658, 671
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 1049, 1178
AvaII GGWCC 4 cut(s) 101, 332, 539, 671
BaeGI GKGCMC 1 cut(s) 354
BamHI GGATCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 309
Bbv12I GWGCWC 2 cut(s) 309, 321
BccI CCATC 2 cut(s) 501, 583
BciT130I CCWGG 1 cut(s) 786
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 4 cut(s) 197, 859, 1009, 1138
BfaI CTAG 2 cut(s) 453, 950
BfoI RGCGCY 2 cut(s) 186, 254
BfuAI ACCTGC 2 cut(s) 96, 847
BisI GCNGC 2 cut(s) 92, 260
BlsI GCNGC 2 cut(s) 93, 261
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 2 cut(s) 80, 786
Bme18I GGWCC 4 cut(s) 101, 332, 539, 671
BmgT120I GGNCC 7 cut(s) 38, 82, 101, 332, 539, 658, 671
BmiI GGNNCC 5 cut(s) 77, 83, 103, 672, 673
BmrFI CCNGG 2 cut(s) 80, 786
BmrI ACTGGG 1 cut(s) 620
BmsI GCATC 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 620
BpmI CTGGAG 1 cut(s) 1355
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 4 cut(s) 34, 79, 412, 785
BsaWI WCCGGW 1 cut(s) 98
Bsc4I CCNNNNNNNGG 6 cut(s) 69, 135, 359, 413, 414, 667
Bse118I RCCGGY 5 cut(s) 98, 241, 363, 516, 660
Bse1I ACTGG 8 cut(s) 626, 1020, 1048, 1149, 1177, 1290, 1318, 1372
BseBI CCWGG 1 cut(s) 786
BseDI CCNNGG 4 cut(s) 34, 79, 412, 785
BseGI GGATG 6 cut(s) 286, 512, 913, 1032, 1161, 1302
BseLI CCNNNNNNNGG 6 cut(s) 69, 135, 359, 413, 414, 667
BseMII CTCAG 2 cut(s) 257, 294
BseNI ACTGG 8 cut(s) 626, 1020, 1048, 1149, 1177, 1290, 1318, 1372
BseRI GAGGAG 2 cut(s) 39, 779
BseSI GKGCMC 1 cut(s) 354
BseYI CCCAGC 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 797
Bsh1236I CGCG 2 cut(s) 58, 169
BshFI GGCC 7 cut(s) 39, 84, 314, 363, 516, 520, 660
BshTI ACCGGT 1 cut(s) 98
BsiHKAI GWGCWC 2 cut(s) 309, 321
BsiSI CCGG 7 cut(s) 79, 99, 242, 278, 364, 517, 661
BslFI GGGAC 3 cut(s) 87, 657, 1259
BslI CCNNNNNNNGG 6 cut(s) 69, 135, 359, 413, 414, 667
BsmAI GTCTC 4 cut(s) 197, 859, 1009, 1138
BsmFI GGGAC 3 cut(s) 87, 657, 1259
BsmI GAATGC 1 cut(s) 441
BsnI GGCC 7 cut(s) 39, 84, 314, 363, 516, 520, 660
Bsp1286I GDGCHC 3 cut(s) 309, 321, 354
Bsp143I GATC 4 cut(s) 75, 177, 805, 1350
BspACI CCGC 7 cut(s) 91, 121, 260, 275, 613, 694, 859
BspANI GGCC 7 cut(s) 39, 84, 314, 363, 516, 520, 660
BspCNI CTCAG 2 cut(s) 258, 295
BspFNI CGCG 2 cut(s) 58, 169
BspLI GGNNCC 5 cut(s) 77, 83, 103, 672, 673
BspMI ACCTGC 2 cut(s) 96, 847
BspPI GGATC 4 cut(s) 70, 83, 185, 800
BsrFI RCCGGY 5 cut(s) 98, 241, 363, 516, 660
BsrI ACTGG 8 cut(s) 626, 1020, 1048, 1149, 1177, 1290, 1318, 1372
BssAI RCCGGY 5 cut(s) 98, 241, 363, 516, 660
BssECI CCNNGG 4 cut(s) 34, 79, 412, 785
BssMI GATC 4 cut(s) 75, 177, 805, 1350
BssT1I CCWWGG 2 cut(s) 34, 412
Bst2UI CCWGG 1 cut(s) 786
Bst4CI ACNGT 3 cut(s) 45, 290, 1334
BstC8I GCNNGC 8 cut(s) 60, 243, 365, 518, 662, 1035, 1164, 1305
BstDEI CTNAG 3 cut(s) 266, 303, 1103
BstF5I GGATG 6 cut(s) 286, 512, 913, 1032, 1161, 1302
BstFNI CGCG 2 cut(s) 58, 169
BstH2I RGCGCY 2 cut(s) 186, 254
BstHHI GCGC 3 cut(s) 169, 185, 253
BstKTI GATC 4 cut(s) 78, 180, 808, 1353
BstMAI GTCTC 4 cut(s) 197, 859, 1009, 1138
BstMBI GATC 4 cut(s) 75, 177, 805, 1350
BstMWI GCNNNNNNNGC 2 cut(s) 259, 325
BstNI CCWGG 1 cut(s) 786
BstSCI CCNGG 2 cut(s) 78, 784
BstSLI GKGCMC 1 cut(s) 354
BstUI CGCG 2 cut(s) 58, 169
BstX2I RGATCY 1 cut(s) 75
BstXI CCANNNNNNTGG 3 cut(s) 329, 1124, 1265
BstYI RGATCY 1 cut(s) 75
BsuRI GGCC 7 cut(s) 39, 84, 314, 363, 516, 520, 660
BtsCI GGATG 6 cut(s) 286, 512, 913, 1032, 1161, 1302
BtsI GCAGTG 1 cut(s) 809
BtsIMutI CAGTG 5 cut(s) 686, 809, 1027, 1156, 1297
BveI ACCTGC 2 cut(s) 96, 847
Cac8I GCNNGC 8 cut(s) 60, 243, 365, 518, 662, 1035, 1164, 1305
CfoI GCGC 3 cut(s) 169, 185, 253
Cfr10I RCCGGY 5 cut(s) 98, 241, 363, 516, 660
Cfr13I GGNCC 7 cut(s) 38, 82, 101, 332, 539, 658, 671
CseI GACGC 2 cut(s) 64, 158
Csp6I GTAC 4 cut(s) 96, 144, 295, 1375
CspAI ACCGGT 1 cut(s) 98
CviAII CATG 3 cut(s) 69, 113, 499
CviQI GTAC 4 cut(s) 96, 144, 295, 1375
DdeI CTNAG 3 cut(s) 266, 303, 1103
DpnI GATC 4 cut(s) 77, 179, 807, 1352
DpnII GATC 4 cut(s) 75, 177, 805, 1350
EaeI YGGCCR 3 cut(s) 312, 361, 514
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 2 cut(s) 34, 412
Eco24I GRGCYC 1 cut(s) 309
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 4 cut(s) 101, 332, 539, 671
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 671
EcoRII CCWGG 1 cut(s) 784
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 2 cut(s) 34, 412
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 2 cut(s) 34, 412
FaeI CATG 3 cut(s) 72, 116, 502
FaqI GGGAC 3 cut(s) 87, 657, 1259
FatI CATG 3 cut(s) 68, 112, 498
FauI CCCGC 3 cut(s) 128, 282, 687
FauNDI CATATG 4 cut(s) 356, 994, 1123, 1264
FblI GTMKAC 1 cut(s) 781
Fnu4HI GCNGC 2 cut(s) 92, 260
FokI GGATG 6 cut(s) 293, 519, 920, 1039, 1168, 1309
FriOI GRGCYC 1 cut(s) 309
FseI GGCCGGCC 1 cut(s) 520
Fsp4HI GCNGC 2 cut(s) 92, 260
FspBI CTAG 2 cut(s) 453, 950
GlaI GCGC 3 cut(s) 168, 184, 252
GluI GCNGC 2 cut(s) 92, 260
GsaI CCCAGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 1355
HaeII RGCGCY 2 cut(s) 186, 254
HaeIII GGCC 7 cut(s) 39, 84, 314, 363, 516, 520, 660
HapII CCGG 7 cut(s) 79, 99, 242, 278, 364, 517, 661
HgaI GACGC 2 cut(s) 64, 158
HhaI GCGC 3 cut(s) 169, 185, 253
Hin1II CATG 3 cut(s) 72, 116, 502
Hin6I GCGC 3 cut(s) 167, 183, 251
HinP1I GCGC 3 cut(s) 167, 183, 251
HindIII AAGCTT 2 cut(s) 326, 702
HinfI GANTC 6 cut(s) 206, 373, 767, 911, 1054, 1183
HpaII CCGG 7 cut(s) 79, 99, 242, 278, 364, 517, 661
HphI GGTGA 2 cut(s) 1049, 1178
Hpy166II GTNNAC 4 cut(s) 286, 542, 782, 1337
Hpy188I TCNGA 3 cut(s) 469, 1050, 1179
Hpy188III TCNNGA 6 cut(s) 370, 377, 396, 524, 601, 1383
Hpy8I GTNNAC 4 cut(s) 286, 542, 782, 1337
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 73
HpyCH4III ACNGT 3 cut(s) 45, 290, 1334
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 4 cut(s) 439, 814, 1231, 1321
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 325
HpyF3I CTNAG 3 cut(s) 266, 303, 1103
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 3 cut(s) 72, 116, 502
HspAI GCGC 3 cut(s) 167, 183, 251
KflI GGGWCCC 1 cut(s) 671
KroI GCCGGC 4 cut(s) 241, 363, 516, 660
KroNI GCCGGC 4 cut(s) 243, 365, 518, 662
Kzo9I GATC 4 cut(s) 75, 177, 805, 1350
LmnI GCTCC 5 cut(s) 113, 139, 934, 1078, 1207
LweI GCATC 1 cut(s) 393
MaeI CTAG 2 cut(s) 453, 950
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 5 cut(s) 170, 912, 1055, 1184, 1328
MalI GATC 4 cut(s) 77, 179, 807, 1352
MboI GATC 4 cut(s) 75, 177, 805, 1350
MboII GAAGA 6 cut(s) 899, 989, 1121, 1262, 1345, 1357
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 3 cut(s) 309, 321, 354
MluCI AATT 8 cut(s) 232, 481, 643, 649, 682, 833, 967, 1240
MluI ACGCGT 1 cut(s) 56
MlyI GAGTC 4 cut(s) 776, 920, 1063, 1192
MmeI TCCRAC 3 cut(s) 597, 1141, 1282
MreI CGCCGGCG 1 cut(s) 241
MroNI GCCGGC 4 cut(s) 241, 363, 516, 660
MroXI GAANNNNTTC 2 cut(s) 739, 891
MseI TTAA 4 cut(s) 473, 971, 1244, 1341
MslI CAYNNNNRTG 1 cut(s) 801
MspI CCGG 7 cut(s) 79, 99, 242, 278, 364, 517, 661
MspR9I CCNGG 2 cut(s) 80, 786
Mva1269I GAATGC 1 cut(s) 441
MvaI CCWGG 1 cut(s) 786
MvnI CGCG 2 cut(s) 58, 169
MwoI GCNNNNNNNGC 2 cut(s) 259, 325
NaeI GCCGGC 4 cut(s) 243, 365, 518, 662
NciI CCSGG 1 cut(s) 80
NdeI CATATG 4 cut(s) 356, 994, 1123, 1264
NdeII GATC 4 cut(s) 75, 177, 805, 1350
NgoMIV GCCGGC 4 cut(s) 241, 363, 516, 660
NlaIII CATG 3 cut(s) 72, 116, 502
NlaIV GGNNCC 5 cut(s) 77, 83, 103, 672, 673
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 4 cut(s) 170, 912, 1055, 1184
PaqCI CACCTGC 1 cut(s) 96
PctI GAATGC 1 cut(s) 441
PdiI GCCGGC 4 cut(s) 243, 365, 518, 662
PdmI GAANNNNTTC 2 cut(s) 739, 891
PfeI GAWTC 2 cut(s) 206, 373
PinAI ACCGGT 1 cut(s) 98
PkrI GCNGC 2 cut(s) 93, 261
PleI GAGTC 4 cut(s) 775, 919, 1062, 1191
PpsI GAGTC 4 cut(s) 775, 919, 1062, 1191
PpuMI RGGWCCY 1 cut(s) 671
PsiI TTATAA 1 cut(s) 821
Psp124BI GAGCTC 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 671
Psp6I CCWGG 1 cut(s) 784
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 1 cut(s) 784
PspN4I GGNNCC 5 cut(s) 77, 83, 103, 672, 673
PspPI GGNCC 7 cut(s) 38, 82, 101, 332, 539, 658, 671
PspPPI RGGWCCY 1 cut(s) 671
PsuI RGATCY 1 cut(s) 75
RigI GGCCGGCC 1 cut(s) 520
RsaI GTAC 4 cut(s) 97, 145, 296, 1376
RsaNI GTAC 4 cut(s) 96, 144, 295, 1375
RseI CAYNNNNRTG 1 cut(s) 801
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 4 cut(s) 473, 971, 1244, 1341
SatI GCNGC 2 cut(s) 92, 260
Sau3AI GATC 4 cut(s) 75, 177, 805, 1350
Sau96I GGNCC 7 cut(s) 38, 82, 101, 332, 539, 658, 671
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 4 cut(s) 776, 920, 1063, 1192
ScrFI CCNGG 2 cut(s) 80, 786
SduI GDGCHC 3 cut(s) 309, 321, 354
SfaNI GCATC 1 cut(s) 393
SgrAI CRCCGGYG 1 cut(s) 241
SinI GGWCC 4 cut(s) 101, 332, 539, 671
SmiMI CAYNNNNRTG 1 cut(s) 801
Sse9I AATT 8 cut(s) 232, 481, 643, 649, 682, 833, 967, 1240
SsiI CCGC 7 cut(s) 91, 121, 260, 275, 613, 694, 859
SspI AATATT 2 cut(s) 12, 847
SspMI CTAG 2 cut(s) 453, 950
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 2 cut(s) 78, 784
StyI CCWWGG 2 cut(s) 34, 412
TaaI ACNGT 3 cut(s) 45, 290, 1334
TaiI ACGT 1 cut(s) 445
TaqI TCGA 3 cut(s) 630, 825, 852
TasI AATT 8 cut(s) 232, 481, 643, 649, 682, 833, 967, 1240
TatI WGTACW 2 cut(s) 294, 1374
TauI GCSGC 2 cut(s) 94, 262
TfiI GAWTC 2 cut(s) 206, 373
Tru1I TTAA 4 cut(s) 473, 971, 1244, 1341
Tru9I TTAA 4 cut(s) 473, 971, 1244, 1341
TscAI CASTG 5 cut(s) 693, 816, 1027, 1156, 1297
TseFI GTSAC 4 cut(s) 170, 912, 1055, 1184
Tsp45I GTSAC 4 cut(s) 170, 912, 1055, 1184
TspDTI ATGAA 4 cut(s) 566, 1043, 1172, 1313
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 5 cut(s) 693, 816, 1027, 1156, 1297
VpaK11BI GGWCC 4 cut(s) 101, 332, 539, 671
XapI RAATTY 2 cut(s) 232, 643
XmiI GTMKAC 1 cut(s) 781
XmnI GAANNNNTTC 2 cut(s) 739, 891
XspI CTAG 2 cut(s) 453, 950
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.