Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Reverse (-)

34572499 .. 34575872

Gene Structure 3374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41080.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTCAGGCTCGTACGCCCAGAATTTCTCGCCGGCGAGGGCGTTGTCGCCGCACCTGAGAACCCCGCCGGATGTGGACAGTCAGTACTTGACTGAGCTCTTGGCCGAGCACCAAAAGCTTGGACCTTTCGCCCAGGTCGTGCCCATTTGTGGCCGTCTCTTGAATCAAGAGATATTAAGAGTTTCTGGAATGATGCCCAACCAAGGGTATAGTGACTTTGACAGACTGCAACGTGGAAGCCCTAGCCCTATTGGTTCGGACATAATGCCGAATTATAGAGGGTCAAGCCTGGGTGGATGGAATGGCCGGCCTCACGATAGATTAGGTGGTCCACAAGGAATGAATATGGAATGGCAAGTGGCACCATCAAGTCCAAGTTCCTACATCGTGAAGAGGATACTGCGGTTGGATATCCCGGTGGATAGCTTTCCAAATTTCAATTTTGTGGGCCGGCTTCTGGGTCCCAGAGGCAATTCACTAAAGCGGGTGGAAGCTTCCACAGGTTGTCGTGTGTATATAAGAGGAAAGTGTTCAATAAGAGATATAGACAAGGAGGAGTCTTTGAGGGGTAGACCAGGGTATGAGCATTTGAATGATCCACTGCACATTATAATCGAGGCTGAATTACCTGCCAATATTGTTGATATGCGGTTGAGACAAGCGAAACAAATCATTGAAGAACTTCTCAAACCTATGGATGAGTCACAAGACCACTACAAGAGGGAGCAGTTGAGAGAACTTGCTATGCTAAAATCAAATTTAAGAGAAGAGAGTCCTCAACCATATGGGAGTGTCTCCCCTTTCACTTCCAGCGGGATGAAGCGTGCCAAAACTGGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

281

Amino Acids

31.4

Weight (kDa)

9.11

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH-I_KHDC4-BBP	PF22675	67 - 153	3.1e-19	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	611
Acc36I	ACCTGC	1 cut(s)	637
AccB1I	GGYRCC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	571
AciI	CCGC	6 cut(s)	50, 65, 403, 484, 649, 813
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	3 cut(s)	102, 151, 304
AcsI	RAATTY	3 cut(s)	22, 433, 757
AfaI	GTAC	2 cut(s)	14, 86
AfiI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
AgsI	TTSAA	5 cut(s)	163, 439, 534, 592, 677
AjnI	CCWGG	3 cut(s)	132, 288, 574
AluBI	AGCT	4 cut(s)	97, 118, 426, 494
AluI	AGCT	4 cut(s)	97, 118, 426, 494
Alw21I	GWGCWC	2 cut(s)	99, 111
Alw26I	GTCTC	3 cut(s)	161, 649, 799
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	5 cut(s)	102, 151, 304, 308, 448
ApoI	RAATTY	3 cut(s)	22, 433, 757
Asp700I	GAANNNNTTC	2 cut(s)	529, 681
AspS9I	GGNCC	4 cut(s)	122, 329, 448, 461
AsuC2I	CCSGG	1 cut(s)	416
AvaII	GGWCC	3 cut(s)	122, 329, 461
BaeGI	GKGCMC	1 cut(s)	144
BaeI	ACNNNNGTAYC	2 cut(s)	389, 422
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	99
Bbv12I	GWGCWC	2 cut(s)	99, 111
BccI	CCATC	2 cut(s)	291, 373
BceAI	ACGGC	1 cut(s)	138
BciT130I	CCWGG	3 cut(s)	134, 290, 576
BciVI	GTATCC	1 cut(s)	390
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	3 cut(s)	161, 649, 799
BfaI	CTAG	1 cut(s)	243
BfmI	CTRYAG	1 cut(s)	839
BfuAI	ACCTGC	1 cut(s)	637
BfuI	GTATCC	1 cut(s)	390
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	4 cut(s)	134, 290, 416, 576
Bme18I	GGWCC	3 cut(s)	122, 329, 461
BmgT120I	GGNCC	4 cut(s)	122, 329, 448, 461
BmiI	GGNNCC	3 cut(s)	363, 462, 463
BmrFI	CCNGG	4 cut(s)	134, 290, 416, 576
BmsI	GCATC	1 cut(s)	183
BpuMI	CCSGG	1 cut(s)	416
BsaJI	CCNNGG	4 cut(s)	132, 202, 289, 575
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
Bse118I	RCCGGY	3 cut(s)	31, 306, 450
Bse1I	ACTGG	1 cut(s)	838
BseBI	CCWGG	3 cut(s)	134, 290, 576
BseDI	CCNNGG	4 cut(s)	132, 202, 289, 575
BseGI	GGATG	4 cut(s)	76, 302, 703, 822
BseLI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
BseMII	CTCAG	2 cut(s)	47, 84
BseNI	ACTGG	1 cut(s)	838
BseRI	GAGGAG	1 cut(s)	569
BseSI	GKGCMC	1 cut(s)	144
BsgI	GTGCAG	1 cut(s)	587
BshFI	GGCC	5 cut(s)	104, 153, 306, 310, 450
BshNI	GGYRCC	1 cut(s)	361
BsiHKAI	GWGCWC	2 cut(s)	99, 111
BsiSI	CCGG	5 cut(s)	32, 68, 307, 416, 451
BsiWI	CGTACG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	4 cut(s)	149, 203, 204, 457
BsmAI	GTCTC	3 cut(s)	161, 649, 799
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	5 cut(s)	104, 153, 306, 310, 450
Bsp1286I	GDGCHC	3 cut(s)	99, 111, 144
Bsp143I	GATC	1 cut(s)	595
BspACI	CCGC	6 cut(s)	50, 65, 403, 484, 649, 813
BspANI	GGCC	5 cut(s)	104, 153, 306, 310, 450
BspCNI	CTCAG	2 cut(s)	48, 85
BspLI	GGNNCC	3 cut(s)	363, 462, 463
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	361
BsrFI	RCCGGY	3 cut(s)	31, 306, 450
BsrI	ACTGG	1 cut(s)	838
BssAI	RCCGGY	3 cut(s)	31, 306, 450
BssECI	CCNNGG	4 cut(s)	132, 202, 289, 575
BssMI	GATC	1 cut(s)	595
BssT1I	CCWWGG	1 cut(s)	202
Bst2UI	CCWGG	3 cut(s)	134, 290, 576
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	2 cut(s)	386, 762
BstC8I	GCNNGC	4 cut(s)	33, 308, 452, 825
BstDEI	CTNAG	2 cut(s)	56, 93
BstF5I	GGATG	4 cut(s)	76, 302, 703, 822
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	3 cut(s)	161, 649, 799
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	3 cut(s)	134, 290, 576
BstSCI	CCNGG	4 cut(s)	132, 288, 414, 574
BstSFI	CTRYAG	1 cut(s)	839
BstSLI	GKGCMC	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	5 cut(s)	104, 153, 306, 310, 450
BtsCI	GGATG	4 cut(s)	76, 302, 703, 822
BtsI	GCAGTG	1 cut(s)	599
BtsIMutI	CAGTG	1 cut(s)	599
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	4 cut(s)	33, 308, 452, 825
Cfr10I	RCCGGY	3 cut(s)	31, 306, 450
Cfr13I	GGNCC	4 cut(s)	122, 329, 448, 461
Csp6I	GTAC	2 cut(s)	13, 85
CviQI	GTAC	2 cut(s)	13, 85
DdeI	CTNAG	2 cut(s)	56, 93
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
EaeI	YGGCCR	3 cut(s)	102, 151, 304
Eam1104I	CTCTTC	2 cut(s)	386, 762
EarI	CTCTTC	2 cut(s)	386, 762
Ecl136II	GAGCTC	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	3 cut(s)	122, 329, 461
Eco53kI	GAGCTC	1 cut(s)	97
EcoICRI	GAGCTC	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRII	CCWGG	3 cut(s)	132, 288, 574
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	161
FaqI	GGGAC	1 cut(s)	447
FauI	CCCGC	3 cut(s)	72, 477, 806
FauNDI	CATATG	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	4 cut(s)	83, 309, 710, 829
FriOI	GRGCYC	1 cut(s)	99
FseI	GGCCGGCC	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	1 cut(s)	50
HaeIII	GGCC	5 cut(s)	104, 153, 306, 310, 450
HapII	CCGG	5 cut(s)	32, 68, 307, 416, 451
HindIII	AAGCTT	2 cut(s)	116, 492
HinfI	GANTC	4 cut(s)	163, 557, 701, 772
HpaII	CCGG	5 cut(s)	32, 68, 307, 416, 451
Hpy166II	GTNNAC	3 cut(s)	76, 332, 572
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	5 cut(s)	160, 167, 186, 314, 388
Hpy8I	GTNNAC	3 cut(s)	76, 332, 572
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	2 cut(s)	229, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	56, 93
HpySE526I	ACGT	1 cut(s)	232
KflI	GGGWCCC	1 cut(s)	461
KroI	GCCGGC	3 cut(s)	31, 306, 450
KroNI	GCCGGC	3 cut(s)	33, 308, 452
Kzo9I	GATC	1 cut(s)	595
LmnI	GCTCC	1 cut(s)	724
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	212, 702
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	3 cut(s)	403, 689, 779
MhlI	GDGCHC	3 cut(s)	99, 111, 144
MluCI	AATT	7 cut(s)	22, 271, 433, 439, 472, 623, 757
MlyI	GAGTC	3 cut(s)	566, 710, 781
MmeI	TCCRAC	1 cut(s)	387
MreI	CGCCGGCG	1 cut(s)	31
MroNI	GCCGGC	3 cut(s)	31, 306, 450
MroXI	GAANNNNTTC	2 cut(s)	529, 681
MseI	TTAA	2 cut(s)	176, 761
MslI	CAYNNNNRTG	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	813
MspI	CCGG	5 cut(s)	32, 68, 307, 416, 451
MspR9I	CCNGG	4 cut(s)	134, 290, 416, 576
MvaI	CCWGG	3 cut(s)	134, 290, 576
MwoI	GCNNNNNNNGC	1 cut(s)	115
NaeI	GCCGGC	3 cut(s)	33, 308, 452
NciI	CCSGG	1 cut(s)	416
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	1 cut(s)	595
NgoMIV	GCCGGC	3 cut(s)	31, 306, 450
NlaIV	GGNNCC	3 cut(s)	363, 462, 463
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	2 cut(s)	212, 702
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	3 cut(s)	33, 308, 452
PdmI	GAANNNNTTC	2 cut(s)	529, 681
PfeI	GAWTC	1 cut(s)	163
Pfl23II	CGTACG	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	51
PleI	GAGTC	3 cut(s)	565, 709, 780
PpsI	GAGTC	3 cut(s)	565, 709, 780
PpuMI	RGGWCCY	1 cut(s)	461
PsiI	TTATAA	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	3 cut(s)	132, 288, 574
PspGI	CCWGG	3 cut(s)	132, 288, 574
PspLI	CGTACG	1 cut(s)	12
PspN4I	GGNNCC	3 cut(s)	363, 462, 463
PspPI	GGNCC	4 cut(s)	122, 329, 448, 461
PspPPI	RGGWCCY	1 cut(s)	461
RigI	GGCCGGCC	1 cut(s)	310
RsaI	GTAC	2 cut(s)	14, 86
RsaNI	GTAC	2 cut(s)	13, 85
RseI	CAYNNNNRTG	1 cut(s)	591
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	176, 761
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	4 cut(s)	122, 329, 448, 461
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	3 cut(s)	566, 710, 781
ScrFI	CCNGG	4 cut(s)	134, 290, 416, 576
SduI	GDGCHC	3 cut(s)	99, 111, 144
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	1 cut(s)	839
SgrAI	CRCCGGYG	1 cut(s)	31
SinI	GGWCC	3 cut(s)	122, 329, 461
SmiMI	CAYNNNNRTG	1 cut(s)	591
Sse9I	AATT	7 cut(s)	22, 271, 433, 439, 472, 623, 757
SsiI	CCGC	6 cut(s)	50, 65, 403, 484, 649, 813
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	1 cut(s)	243
SstI	GAGCTC	1 cut(s)	99
StyD4I	CCNGG	4 cut(s)	132, 288, 414, 574
StyI	CCWWGG	1 cut(s)	202
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	615
TasI	AATT	7 cut(s)	22, 271, 433, 439, 472, 623, 757
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	176, 761
Tru9I	TTAA	2 cut(s)	176, 761
TscAI	CASTG	1 cut(s)	606
TseFI	GTSAC	2 cut(s)	212, 702
Tsp45I	GTSAC	2 cut(s)	212, 702
TspDTI	ATGAA	2 cut(s)	356, 833
TspRI	CASTG	1 cut(s)	606
VpaK11BI	GGWCC	3 cut(s)	122, 329, 461
XapI	RAATTY	3 cut(s)	22, 433, 757
XmiI	GTMKAC	1 cut(s)	571
XmnI	GAANNNNTTC	2 cut(s)	529, 681
XspI	CTAG	1 cut(s)	243
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.