Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002333

Physical Location & Seq

Genomic Coordinates Reverse (-)

73891464 .. 73895549

Gene Structure 4086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG528300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGTGATTTGTTCAACTTTGTGGAAAGTGAATGTTGAGAATGCAGTTACTGAACTTTGCTACTCTTCTGAATTGACAGAGATATTACGAGTTTCTGGAATGATGCCCAACCAAGGGTATAGTGATTTTGACAGAATGCAACGTGGAAGCCCTAGCCCTATTGGTTCAGACTTAATGCCAAATTATAGAGGGTCAAGCATGGGGGGATGGAATGGCCGGCCTCACGATAGATTAGGTGGTCCACAAGGAATGAATATGGAGTGGCAAGTAGCACCATCAAGCCCAAGTTCCTACATTGTCAAGAGAATACTGCGGTTGGATATCCCAGTCGATAGCTTTCCAAATTTCAATTTTGTGGGCCGGCTTCTGGGTCCCAGAGGCAATTCACTGAAGCGGGTGGAAGCTTCCACAGGTTGTCGTGTGTATATAAGAGGAAAATGTTCAATAAGAGATATAGACAAGGAGGAGTCTTTGAGGGGTAGACCAGGGTATGAGCATTTGAATGATCCACTGCACATTATAATCGAGGCTGAATTACCTGCTAATATTGTCGATATGCGGTTGAGACAGGCAAAACAAATCATAGAAGAACTTCTCAAACCTATGGATGAGTCACAAGACCACTACAAGAGGGAGCAGTTGAGAGAACTAGCTATGCTAAAATCCAATTTAAGAGAAGAAAGTCCTCAACCATATGGGAGTGTCTCCCCTTTCACTTCCAGTGGGATGAAGCGTGCCAAAACTGGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

250

Amino Acids

28.2

Weight (kDa)

8.64

Isoelectric Point (pI)

58.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH-I_KHDC4-BBP	PF22675	114 - 200	4.9e-19	KHDC4/BBP-like, KH-domain type I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38610 AT2G38610 AT3G08620 AT3G08620
fragaria_vesca	FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_3g41080 FvH4_6g09430 FvH4_6g09430
malus_domestica	MD03G1047700.v1.1 MD04G1177800.v1.1 MD11G1050300.v1.1 MD12G1193400.v1.1
prunus_persica	Prupe.6G038700_v2.0.a1 Prupe.6G297700_v2.0.a1
pyrus_communis	pycom03g03760 pycom04g15680 pycom11g04070 pycom12g17970
rosa_chinensis	RchiOBHm_Chr3g0459891 RchiOBHm_Chr5g0073811
rosa_laevigata	RLG00000025054 RLG00000036419
rosa_multiflora	Rmu_sc0000240.1_g000044 Rmu_sc0000470.1_g000004
rosa_roxburghii	Rroxscaffold_1G00007520 Rroxscaffold_6G00419930
rosa_rugosa	Rorug03G0038400 Rorug03G0038400 Rorug03G0038500 Rorug03G0038600 Rorug05G0426700
rosa_samantha	Rh3AG097300 Rh3BG100000 Rh3CG101900 Rh3DG101600 Rh5AG483900 Rh5CG528300 Rh5DG516800
rosa_wichuraiana	Rw5G044980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
Acc36I	ACCTGC	1 cut(s)	547
AccI	GTMKAC	1 cut(s)	481
AciI	CCGC	3 cut(s)	313, 394, 559
AclWI	GGATC	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	343
AcuI	CTGAAG	1 cut(s)	410
AfiI	CCNNNNNNNGG	3 cut(s)	113, 114, 367
AgsI	TTSAA	4 cut(s)	15, 349, 444, 502
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	3 cut(s)	336, 404, 653
AluI	AGCT	3 cut(s)	336, 404, 653
Alw26I	GTCTC	2 cut(s)	559, 709
AlwI	GGATC	1 cut(s)	500
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	3 cut(s)	214, 218, 358
ApoI	RAATTY	1 cut(s)	343
Asp700I	GAANNNNTTC	2 cut(s)	439, 591
AspS9I	GGNCC	3 cut(s)	239, 358, 371
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	239, 371
BccI	CCATC	2 cut(s)	201, 283
BciT130I	CCWGG	1 cut(s)	486
BcoDI	GTCTC	2 cut(s)	559, 709
BfaI	CTAG	2 cut(s)	153, 650
BfuAI	ACCTGC	1 cut(s)	547
Bme1390I	CCNGG	1 cut(s)	486
Bme18I	GGWCC	2 cut(s)	239, 371
BmgT120I	GGNCC	3 cut(s)	239, 358, 371
BmiI	GGNNCC	2 cut(s)	372, 373
BmrFI	CCNGG	1 cut(s)	486
BmrI	ACTGGG	1 cut(s)	320
BmsI	GCATC	1 cut(s)	93
BmuI	ACTGGG	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	112, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 114, 367
Bse118I	RCCGGY	2 cut(s)	216, 360
Bse1I	ACTGG	3 cut(s)	326, 720, 748
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	112, 485
BseGI	GGATG	3 cut(s)	212, 613, 732
BseLI	CCNNNNNNNGG	3 cut(s)	113, 114, 367
BseNI	ACTGG	3 cut(s)	326, 720, 748
BseRI	GAGGAG	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	497
BshFI	GGCC	3 cut(s)	216, 220, 360
BsiSI	CCGG	2 cut(s)	217, 361
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	3 cut(s)	113, 114, 367
BsmAI	GTCTC	2 cut(s)	559, 709
BsmFI	GGGAC	1 cut(s)	357
BsmI	GAATGC	2 cut(s)	46, 141
BsnI	GGCC	3 cut(s)	216, 220, 360
Bsp143I	GATC	1 cut(s)	505
BspACI	CCGC	3 cut(s)	313, 394, 559
BspANI	GGCC	3 cut(s)	216, 220, 360
BspLI	GGNNCC	2 cut(s)	372, 373
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	1 cut(s)	500
BsrFI	RCCGGY	2 cut(s)	216, 360
BsrI	ACTGG	3 cut(s)	326, 720, 748
BssAI	RCCGGY	2 cut(s)	216, 360
BssECI	CCNNGG	2 cut(s)	112, 485
BssMI	GATC	1 cut(s)	505
BssT1I	CCWWGG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	486
Bst6I	CTCTTC	1 cut(s)	70
BstC8I	GCNNGC	3 cut(s)	218, 362, 735
BstF5I	GGATG	3 cut(s)	212, 613, 732
BstKTI	GATC	1 cut(s)	508
BstMAI	GTCTC	2 cut(s)	559, 709
BstMBI	GATC	1 cut(s)	505
BstNI	CCWGG	1 cut(s)	486
BstSCI	CCNGG	1 cut(s)	484
BsuRI	GGCC	3 cut(s)	216, 220, 360
BtsCI	GGATG	3 cut(s)	212, 613, 732
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	3 cut(s)	386, 509, 727
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	3 cut(s)	218, 362, 735
CaiI	CAGNNNCTG	1 cut(s)	50
Cfr10I	RCCGGY	2 cut(s)	216, 360
Cfr13I	GGNCC	3 cut(s)	239, 358, 371
CviAII	CATG	1 cut(s)	199
DpnI	GATC	1 cut(s)	507
DpnII	GATC	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	112
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	239, 371
Eco57I	CTGAAG	1 cut(s)	410
EcoO109I	RGGNCCY	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	484
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	1 cut(s)	112
ErhI	CCWWGG	1 cut(s)	112
FaeI	CATG	1 cut(s)	202
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	1 cut(s)	198
FauI	CCCGC	1 cut(s)	387
FauNDI	CATATG	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	481
FokI	GGATG	3 cut(s)	219, 620, 739
FseI	GGCCGGCC	1 cut(s)	220
FspBI	CTAG	2 cut(s)	153, 650
HaeIII	GGCC	3 cut(s)	216, 220, 360
HapII	CCGG	2 cut(s)	217, 361
Hin1II	CATG	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	402
HinfI	GANTC	2 cut(s)	467, 611
HpaII	CCGG	2 cut(s)	217, 361
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	242, 482
Hpy188I	TCNGA	2 cut(s)	70, 169
Hpy188III	TCNNGA	3 cut(s)	96, 224, 301
Hpy8I	GTNNAC	2 cut(s)	242, 482
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	3 cut(s)	44, 139, 514
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	1 cut(s)	202
KflI	GGGWCCC	1 cut(s)	371
KroI	GCCGGC	2 cut(s)	216, 360
KroNI	GCCGGC	2 cut(s)	218, 362
Kzo9I	GATC	1 cut(s)	505
LmnI	GCTCC	1 cut(s)	634
LweI	GCATC	1 cut(s)	93
MaeI	CTAG	2 cut(s)	153, 650
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	2 cut(s)	46, 612
MalI	GATC	1 cut(s)	507
MboI	GATC	1 cut(s)	505
MboII	GAAGA	3 cut(s)	57, 599, 689
MluCI	AATT	7 cut(s)	71, 181, 343, 349, 382, 533, 667
MlyI	GAGTC	2 cut(s)	476, 620
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	9 cut(s)	182, 231, 371, 425, 457, 468, 520, 624, 696
MroNI	GCCGGC	2 cut(s)	216, 360
MroXI	GAANNNNTTC	2 cut(s)	439, 591
MseI	TTAA	2 cut(s)	173, 671
MslI	CAYNNNNRTG	1 cut(s)	501
MspI	CCGG	2 cut(s)	217, 361
MspR9I	CCNGG	1 cut(s)	486
Mva1269I	GAATGC	2 cut(s)	46, 141
MvaI	CCWGG	1 cut(s)	486
NaeI	GCCGGC	2 cut(s)	218, 362
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	1 cut(s)	505
NgoMIV	GCCGGC	2 cut(s)	216, 360
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	372, 373
NmuCI	GTSAC	1 cut(s)	612
PctI	GAATGC	2 cut(s)	46, 141
PdiI	GCCGGC	2 cut(s)	218, 362
PdmI	GAANNNNTTC	2 cut(s)	439, 591
PleI	GAGTC	2 cut(s)	475, 619
PpsI	GAGTC	2 cut(s)	475, 619
PpuMI	RGGWCCY	1 cut(s)	371
PsiI	TTATAA	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	2 cut(s)	372, 373
PspPI	GGNCC	3 cut(s)	239, 358, 371
PspPPI	RGGWCCY	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	50
RigI	GGCCGGCC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	173, 671
Sau3AI	GATC	1 cut(s)	505
Sau96I	GGNCC	3 cut(s)	239, 358, 371
SchI	GAGTC	2 cut(s)	476, 620
ScrFI	CCNGG	1 cut(s)	486
SetI	ASST	8 cut(s)	145, 238, 338, 406, 415, 541, 604, 655
SfaNI	GCATC	1 cut(s)	93
SinI	GGWCC	2 cut(s)	239, 371
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	7 cut(s)	71, 181, 343, 349, 382, 533, 667
SsiI	CCGC	3 cut(s)	313, 394, 559
SspI	AATATT	1 cut(s)	547
SspMI	CTAG	2 cut(s)	153, 650
StyD4I	CCNGG	1 cut(s)	484
StyI	CCWWGG	1 cut(s)	112
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	3 cut(s)	330, 525, 552
TasI	AATT	7 cut(s)	71, 181, 343, 349, 382, 533, 667
Tru1I	TTAA	2 cut(s)	173, 671
Tru9I	TTAA	2 cut(s)	173, 671
TscAI	CASTG	3 cut(s)	393, 516, 727
TseFI	GTSAC	1 cut(s)	612
Tsp45I	GTSAC	1 cut(s)	612
TspDTI	ATGAA	2 cut(s)	266, 743
TspRI	CASTG	3 cut(s)	393, 516, 727
VpaK11BI	GGWCC	2 cut(s)	239, 371
XapI	RAATTY	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	481
XmnI	GAANNNNTTC	2 cut(s)	439, 591
XspI	CTAG	2 cut(s)	153, 650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.