Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Reverse (-)

16486902 .. 16488645

Gene Structure 1744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAGGAACACAAACCAGATATCCTCTCGTGCCTACCGCTAGAGCTTCTACTCTACATCATCAGCTTCCTCCCTTTCGAATCCGCAAGACTAACCCCTTTGGTCTCCACACGGTTTAGGTCCGTTTGGAACCAAGCCATACTCGTCGCTCACAGCCACAACGGCTCCATCGAAGACATATCTCATGCTGTCTCTCGCTTCATCAACAACTTCGATGAGCATGATCCTTCTAAAAACACTCGGAAGCTGGAGTTACACGTTGACAAGTCAACCTTCGTGTCCACTATTCTCGCACCTCATAACGTCATGCATATGAGCTTCTTCTTCTCCGGTGGTTCTAAGAAAGAAGAGAGCTTTTGCTGGCGTCTTGAGATCGACGATCAGATCCCAAGACGTGTGGACTCAAGCGGTTTCTTGGTGAAGACGCTTTGTTTAGACTCCGTTAATTCCTTAACCCATGAGGTTGTTTCCTCAATGGTTTTGGAATTTTCTTTACTTGACAGCCTCAAGATTTGTCGTTGTAAGAGATTGACTTCTCTCACTATTGATTCACCAACTAAGCTTCTTCACTTGTCCATCTCGGGATGCCCGAAGCTGAGATACCTCGAGATCATATCATTTAAGCTTAAAACTTTTCATTACCAAGGATCTCTACCTTTGATCAAGATTCATGAACATTTCAACTTGACCAAGGCGGTTTTCGATGTAACACAAGGCCCAAGCTATTACAACAACGCGTTAGACATCGGTCCTCTCTCGCTGACCATCAAGAATTCTCAATCTCTTACACTATGCAGATGGATGTTCGAGGAAGTAATCAAACCGTCCATATCATCATCTTGGAGATCATTCCAATTCTACAAGTTACAAGAATTGCGGTGGATCGATAACTCGATGAACCAAGAACAAATTAATTCTTTGATCTCTTTTCTCAAACTTTGTCCATCAATAGAGCGCCTCTTCATTACTATCGATTCAAATACTTATAGTTCAAACGAAGAAGTTAGTGTTAATGCTGACCATGCAAGAGTAGTACTAAGGGATCTAGAAGTGGTCAAATTGGAAGGATTCAAGAGTGAAGAAGATAAGAATCAACTGATATTTGCTCTACAAGAGATAGTCAGTATCGATCAGCCTCTGCTTGTACTGTCTTCAATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

387

Amino Acids

44.32

Weight (kDa)

6.17

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	9 - 44	7.2e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	141 - 357	6.3e-13	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	737
AciI	CCGC	5 cut(s)	38, 84, 408, 695, 877
AclWI	GGATC	5 cut(s)	218, 379, 655, 890, 1050
AcsI	RAATTY	2 cut(s)	485, 772
AcyI	GRCGYC	1 cut(s)	364
AfaI	GTAC	2 cut(s)	1035, 1146
AflIII	ACRYGT	3 cut(s)	256, 394, 735
AgsI	TTSAA	5 cut(s)	682, 978, 993, 1072, 1155
AjiI	CACGTC	1 cut(s)	395
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
AluBI	AGCT	9 cut(s)	46, 66, 247, 318, 354, 562, 595, 625, 723
AluI	AGCT	9 cut(s)	46, 66, 247, 318, 354, 562, 595, 625, 723
Alw26I	GTCTC	2 cut(s)	109, 196
AlwI	GGATC	5 cut(s)	218, 379, 655, 890, 1050
AlwNI	CAGNNNCTG	1 cut(s)	1138
Ama87I	CYCGRG	2 cut(s)	580, 605
AoxI	GGCC	1 cut(s)	715
ApoI	RAATTY	2 cut(s)	485, 772
AseI	ATTAAT	1 cut(s)	912
AspLEI	GCGC	1 cut(s)	957
AspS9I	GGNCC	3 cut(s)	120, 716, 749
AsuHPI	GGTGA	2 cut(s)	430, 543
AsuII	TTCGAA	1 cut(s)	78
AvaI	CYCGRG	2 cut(s)	580, 605
AvaII	GGWCC	2 cut(s)	120, 749
BarI	GAAGNNNNNNTAC	2 cut(s)	584, 616
BauI	CACGAG	1 cut(s)	28
BbsI	GAAGAC	3 cut(s)	180, 428, 1143
BccI	CCATC	5 cut(s)	176, 584, 773, 792, 952
BceAI	ACGGC	1 cut(s)	178
BclI	TGATCA	1 cut(s)	660
BcoDI	GTCTC	2 cut(s)	109, 196
BfaI	CTAG	2 cut(s)	41, 1046
BfoI	RGCGCY	1 cut(s)	958
BglI	GCCNNNNNGGC	1 cut(s)	162
BmcAI	AGTACT	1 cut(s)	1035
Bme18I	GGWCC	2 cut(s)	120, 749
BmeT110I	CYCGRG	2 cut(s)	580, 605
BmgBI	CACGTC	1 cut(s)	395
BmgT120I	GGNCC	3 cut(s)	120, 716, 749
BmiI	GGNNCC	2 cut(s)	131, 166
BmsI	GCATC	1 cut(s)	575
BoxI	GACNNNNGTC	1 cut(s)	747
BpiI	GAAGAC	3 cut(s)	180, 428, 1143
BpmI	CTGGAG	1 cut(s)	269
Bpu14I	TTCGAA	1 cut(s)	78
BpuEI	CTTGAG	3 cut(s)	388, 389, 491
Bsa29I	ATCGAT	3 cut(s)	885, 972, 1128
BsaBI	GATNNNNATC	1 cut(s)	1089
BsaHI	GRCGYC	1 cut(s)	364
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	2 cut(s)	643, 690
BsaWI	WCCGGW	1 cut(s)	329
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bse8I	GATNNNNATC	1 cut(s)	1089
BseCI	ATCGAT	3 cut(s)	885, 972, 1128
BseDI	CCNNGG	2 cut(s)	643, 690
BseGI	GGATG	2 cut(s)	590, 807
BseJI	GATNNNNATC	1 cut(s)	1089
BseMII	CTCAG	1 cut(s)	587
Bsh1236I	CGCG	1 cut(s)	737
BshFI	GGCC	1 cut(s)	717
BshVI	ATCGAT	3 cut(s)	885, 972, 1128
BsiHKCI	CYCGRG	2 cut(s)	580, 605
BsiSI	CCGG	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	109, 196
BsnI	GGCC	1 cut(s)	717
Bso31I	GGTCTC	1 cut(s)	109
BsoBI	CYCGRG	2 cut(s)	580, 605
Bsp119I	TTCGAA	1 cut(s)	78
BspACI	CCGC	5 cut(s)	38, 84, 408, 695, 877
BspANI	GGCC	1 cut(s)	717
BspCNI	CTCAG	1 cut(s)	588
BspDI	ATCGAT	3 cut(s)	885, 972, 1128
BspFNI	CGCG	1 cut(s)	737
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	131, 166
BspPI	GGATC	5 cut(s)	218, 379, 655, 890, 1050
BspT104I	TTCGAA	1 cut(s)	78
BspTNI	GGTCTC	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	643, 690
BssNI	GRCGYC	1 cut(s)	364
BssSI	CACGAG	1 cut(s)	28
BssT1I	CCWWGG	2 cut(s)	643, 690
Bst2BI	CACGAG	1 cut(s)	28
Bst4CI	ACNGT	3 cut(s)	114, 825, 1149
Bst6I	CTCTTC	2 cut(s)	342, 965
BstACI	GRCGYC	1 cut(s)	364
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	4 cut(s)	339, 558, 596, 1037
BstF5I	GGATG	2 cut(s)	590, 807
BstFNI	CGCG	1 cut(s)	737
BstH2I	RGCGCY	1 cut(s)	958
BstHHI	GCGC	1 cut(s)	957
BstMAI	GTCTC	2 cut(s)	109, 196
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 1022
BstPAI	GACNNNNGTC	1 cut(s)	747
BstUI	CGCG	1 cut(s)	737
BstV2I	GAAGAC	3 cut(s)	180, 428, 1143
BstX2I	RGATCY	3 cut(s)	384, 647, 1042
BstYI	RGATCY	3 cut(s)	384, 647, 1042
Bsu15I	ATCGAT	3 cut(s)	885, 972, 1128
BsuRI	GGCC	1 cut(s)	717
BsuTUI	ATCGAT	3 cut(s)	885, 972, 1128
BtrI	CACGTC	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	590, 807
Cac8I	GCNNGC	1 cut(s)	362
CaiI	CAGNNNCTG	1 cut(s)	1138
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	1 cut(s)	957
Cfr13I	GGNCC	3 cut(s)	120, 716, 749
ClaI	ATCGAT	3 cut(s)	885, 972, 1128
CseI	GACGC	2 cut(s)	353, 433
Csp6I	GTAC	2 cut(s)	1034, 1145
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	6 cut(s)	185, 221, 307, 458, 671, 1022
CviQI	GTAC	2 cut(s)	1034, 1145
DdeI	CTNAG	4 cut(s)	339, 558, 596, 1037
Eam1104I	CTCTTC	2 cut(s)	342, 965
EarI	CTCTTC	2 cut(s)	342, 965
Eco130I	CCWWGG	2 cut(s)	643, 690
Eco31I	GGTCTC	1 cut(s)	109
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	120, 749
Eco88I	CYCGRG	2 cut(s)	580, 605
EcoRI	GAATTC	1 cut(s)	772
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	2 cut(s)	643, 690
EcoT22I	ATGCAT	1 cut(s)	312
ErhI	CCWWGG	2 cut(s)	643, 690
FaeI	CATG	6 cut(s)	188, 224, 310, 461, 674, 1025
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	6 cut(s)	184, 220, 306, 457, 670, 1021
FauNDI	CATATG	1 cut(s)	312
FbaI	TGATCA	1 cut(s)	660
FokI	GGATG	2 cut(s)	597, 814
FspBI	CTAG	2 cut(s)	41, 1046
GlaI	GCGC	1 cut(s)	956
GsuI	CTGGAG	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	958
HaeIII	GGCC	1 cut(s)	717
HapII	CCGG	1 cut(s)	330
HgaI	GACGC	2 cut(s)	353, 433
HhaI	GCGC	1 cut(s)	957
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	6 cut(s)	188, 224, 310, 461, 674, 1025
Hin6I	GCGC	1 cut(s)	955
HinP1I	GCGC	1 cut(s)	955
HincII	GTYRAC	2 cut(s)	262, 270
HindII	GTYRAC	2 cut(s)	262, 270
HindIII	AAGCTT	2 cut(s)	560, 623
HinfI	GANTC	8 cut(s)	80, 401, 437, 548, 667, 974, 1068, 1090
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	2 cut(s)	430, 543
Hpy166II	GTNNAC	4 cut(s)	262, 270, 282, 400
Hpy188I	TCNGA	2 cut(s)	243, 384
Hpy8I	GTNNAC	4 cut(s)	262, 270, 282, 400
Hpy99I	CGWCG	2 cut(s)	149, 380
HpyAV	CCTTC	3 cut(s)	237, 283, 1058
HpyCH4III	ACNGT	3 cut(s)	114, 825, 1149
HpyCH4IV	ACGT	3 cut(s)	258, 303, 394
HpyCH4V	TGCA	3 cut(s)	310, 795, 1025
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 1022
HpyF3I	CTNAG	4 cut(s)	339, 558, 596, 1037
HpySE526I	ACGT	3 cut(s)	258, 303, 394
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	6 cut(s)	188, 224, 310, 461, 674, 1025
HspAI	GCGC	1 cut(s)	955
Ksp22I	TGATCA	1 cut(s)	660
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	4 cut(s)	30, 233, 343, 346
LweI	GCATC	1 cut(s)	575
MaeI	CTAG	2 cut(s)	41, 1046
MaeII	ACGT	3 cut(s)	258, 303, 394
MaeIII	GTNAC	3 cut(s)	252, 706, 864
MflI	RGATCY	3 cut(s)	384, 647, 1042
MluCI	AATT	9 cut(s)	445, 485, 772, 854, 872, 909, 913, 1058, 1155
MluI	ACGCGT	1 cut(s)	735
MlyI	GAGTC	2 cut(s)	395, 431
Mph1103I	ATGCAT	1 cut(s)	312
MseI	TTAA	6 cut(s)	444, 452, 621, 627, 912, 1011
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	737
MwoI	GCNNNNNNNGC	2 cut(s)	162, 1022
NdeI	CATATG	1 cut(s)	312
NlaIII	CATG	6 cut(s)	188, 224, 310, 461, 674, 1025
NlaIV	GGNNCC	2 cut(s)	131, 166
NsiI	ATGCAT	1 cut(s)	312
NspV	TTCGAA	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	605
PagI	TCATGA	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 587
PfeI	GAWTC	6 cut(s)	80, 548, 667, 974, 1068, 1090
PleI	GAGTC	2 cut(s)	395, 431
PpsI	GAGTC	2 cut(s)	395, 431
PshAI	GACNNNNGTC	1 cut(s)	747
PshBI	ATTAAT	1 cut(s)	912
PspN4I	GGNNCC	2 cut(s)	131, 166
PspPI	GGNCC	3 cut(s)	120, 716, 749
PstNI	CAGNNNCTG	1 cut(s)	1138
PsuI	RGATCY	3 cut(s)	384, 647, 1042
RsaI	GTAC	2 cut(s)	1035, 1146
RsaNI	GTAC	2 cut(s)	1034, 1145
RseI	CAYNNNNRTG	1 cut(s)	311
SaqAI	TTAA	6 cut(s)	444, 452, 621, 627, 912, 1011
Sau96I	GGNCC	3 cut(s)	120, 716, 749
ScaI	AGTACT	1 cut(s)	1035
SchI	GAGTC	2 cut(s)	395, 431
SfaNI	GCATC	1 cut(s)	575
Sfr274I	CTCGAG	1 cut(s)	605
SfuI	TTCGAA	1 cut(s)	78
SinI	GGWCC	2 cut(s)	120, 749
SlaI	CTCGAG	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	4 cut(s)	368, 403, 506, 605
SmoI	CTYRAG	4 cut(s)	368, 403, 506, 605
Sse9I	AATT	9 cut(s)	445, 485, 772, 854, 872, 909, 913, 1058, 1155
SsiI	CCGC	5 cut(s)	38, 84, 408, 695, 877
SspMI	CTAG	2 cut(s)	41, 1046
StyI	CCWWGG	2 cut(s)	643, 690
TaaI	ACNGT	3 cut(s)	114, 825, 1149
TaiI	ACGT	3 cut(s)	261, 306, 397
TaqII	GACCGA	1 cut(s)	737
TasI	AATT	9 cut(s)	445, 485, 772, 854, 872, 909, 913, 1058, 1155
TatI	WGTACW	2 cut(s)	1033, 1144
TfiI	GAWTC	6 cut(s)	80, 548, 667, 974, 1068, 1090
Tru1I	TTAA	6 cut(s)	444, 452, 621, 627, 912, 1011
Tru9I	TTAA	6 cut(s)	444, 452, 621, 627, 912, 1011
TspDTI	ATGAA	6 cut(s)	190, 626, 659, 687, 911, 952
TspGWI	ACGGA	2 cut(s)	112, 430
VpaK11BI	GGWCC	2 cut(s)	120, 749
VspI	ATTAAT	1 cut(s)	912
XapI	RAATTY	2 cut(s)	485, 772
XbaI	TCTAGA	1 cut(s)	1045
XhoI	CTCGAG	1 cut(s)	605
XspI	CTAG	2 cut(s)	41, 1046
ZrmI	AGTACT	1 cut(s)	1035
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.