Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011632.1

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Forward (+)

48876 .. 50504

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011632.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atgcaggagggaaagcttgatgatttgatcagcggcttaccatttgaagtacagaaaagagttgtttccttgctgccattgaaggaagcagtaagaacaagcactctttctacgttttggagaagcctctggtttccaattcagctaagcttggattttgatccaaacccattaaccaatgaaggttctggtcaagaaatcgaacaggttatgggcatgttcttgaggtcttatgcatgtccagaaaaattggagctcaatctcaaagtccttggccatatcaataaggaattggttgtcaaagctaccaaaggggttgagcaagagcttcatgttgagttctttgaaactcagaatgttgcagccaaaacctgtttgagccttcatagcaatccagcccaaaaatctagtttcttcggggtcaagcttcttcacctcagatcaatcacccatctttccaaacctttggtttctatgctgctttcaaattgtaatgttcttgaaagcttgaggcttgttaaatgtagagagttggagagccttgaagtagagacagagagtcttcagagcttggtggtggaagactgttcagatatttctgctattgtggtttctgctccaaatctaatatcttttgagtatcatggtgctcttgctcagattgagataaagaatacagtgagcttggttaatgttgtgctcgatttgagagatggaccaggaagcaatgagtttgattgtgaggatgtcttgcccatcctagcttctctcaaggatgttgaggttctcaccgtaagtggctggcttcttgagtggttgtgttcggcgggagtgatatttgggcggcttgagtttcagttcaacaaactaaaggagttgagttgcattgattctgttatcagtaaggacaaaagggattctcttgcctgcttcctaaactcatgtccttccttgatgaagttgtccgtcgagattgagagcaagctgaacttcatccccagtccgtgcttccatcaatactggcatgaacctcacctctggatggacttcaagactgtaaagacaaatacttcgaatcttgaacagctcaaaagtgtcgacttggttggcttcgtcggcaaagaagacgaattgctactaatggatctcttgcttgagaaggcaattaatctcaactcgttgactcttgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

397

Amino Acids

44.55

Weight (kDa)

5.04

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1098
AciI	CCGC	3 cut(s)	33, 827, 844
AclWI	GGATC	2 cut(s)	155, 1152
AcoI	YGGCCR	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	548
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	1042
AgsI	TTSAA	9 cut(s)	47, 82, 347, 486, 503, 545, 862, 1051, 1082
AhdI	GACNNNNNGTC	1 cut(s)	558
AjnI	CCWGG	1 cut(s)	718
Alw21I	GWGCWC	3 cut(s)	258, 652, 702
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	155, 1152
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	3 cut(s)	73, 362, 478
ArsI	GACNNNNNNTTYG	2 cut(s)	1054, 1086
AseI	ATTAAT	1 cut(s)	1167
AspS9I	GGNCC	1 cut(s)	716
AsuHPI	GGTGA	4 cut(s)	425, 439, 781, 1025
AsuII	TTCGAA	1 cut(s)	1073
AvaII	GGWCC	1 cut(s)	716
BalI	TGGCCA	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	3 cut(s)	554, 588, 1131
Bbv12I	GWGCWC	3 cut(s)	258, 652, 702
BbvI	GCAGC	3 cut(s)	60, 374, 465
BccI	CCATC	5 cut(s)	459, 707, 764, 1020, 1036
BciT130I	CCWGG	1 cut(s)	720
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	2 cut(s)	408, 761
BisI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	5 cut(s)	35, 75, 364, 480, 846
Bme1390I	CCNGG	1 cut(s)	720
Bme18I	GGWCC	1 cut(s)	716
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmgT120I	GGNCC	1 cut(s)	716
BmrFI	CCNGG	1 cut(s)	720
BmrI	ACTGGG	1 cut(s)	993
BmuI	ACTGGG	1 cut(s)	993
BpiI	GAAGAC	3 cut(s)	554, 588, 1131
Bpu1102I	GCTNAGC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	1073
BpuEI	CTTGAG	6 cut(s)	244, 529, 755, 830, 869, 1175
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	1042
Bse1I	ACTGG	2 cut(s)	999, 1025
Bse3DI	GCAATG	1 cut(s)	733
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	5 cut(s)	751, 756, 781, 993, 1047
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	1042
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	3 cut(s)	365, 451, 671
BseNI	ACTGG	2 cut(s)	999, 1025
BseXI	GCAGC	3 cut(s)	60, 374, 465
BshFI	GGCC	1 cut(s)	276
BsiHKAI	GWGCWC	3 cut(s)	258, 652, 702
BslI	CCNNNNNNNGG	1 cut(s)	1042
BsmAI	GTCTC	1 cut(s)	545
BsnI	GGCC	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	1073
Bsp1286I	GDGCHC	3 cut(s)	258, 652, 702
Bsp143I	GATC	4 cut(s)	27, 160, 440, 1144
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	3 cut(s)	33, 827, 844
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	3 cut(s)	364, 450, 670
BspPI	GGATC	2 cut(s)	155, 1152
BspT104I	TTCGAA	1 cut(s)	1073
BsrDI	GCAATG	1 cut(s)	733
BsrI	ACTGG	2 cut(s)	999, 1025
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	4 cut(s)	27, 160, 440, 1144
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	4 cut(s)	587, 679, 793, 1057
BstBI	TTCGAA	1 cut(s)	1073
BstC8I	GCNNGC	3 cut(s)	803, 928, 983
BstDEI	CTNAG	4 cut(s)	146, 351, 437, 657
BstF5I	GGATG	5 cut(s)	751, 756, 781, 993, 1047
BstKTI	GATC	4 cut(s)	30, 163, 443, 1147
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	4 cut(s)	27, 160, 440, 1144
BstMWI	GCNNNNNNNGC	2 cut(s)	387, 1116
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	2 cut(s)	220, 240
BstSCI	CCNGG	1 cut(s)	718
BstV1I	GCAGC	3 cut(s)	60, 374, 465
BstV2I	GAAGAC	3 cut(s)	554, 588, 1131
BstX2I	RGATCY	1 cut(s)	1144
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	1144
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	5 cut(s)	751, 756, 781, 993, 1047
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	3 cut(s)	803, 928, 983
Cfr13I	GGNCC	1 cut(s)	716
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	6 cut(s)	217, 237, 332, 644, 942, 1025
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	4 cut(s)	146, 351, 437, 657
DpnI	GATC	4 cut(s)	29, 162, 442, 1146
DpnII	GATC	4 cut(s)	27, 160, 440, 1144
DriI	GACNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	716
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	6 cut(s)	220, 240, 335, 647, 945, 1028
FalI	AAGNNNNNCTT	2 cut(s)	974, 1006
FatI	CATG	6 cut(s)	216, 236, 331, 643, 941, 1024
FauI	CCCGC	1 cut(s)	820
FbaI	TGATCA	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	1098
Fnu4HI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
FokI	GGATG	5 cut(s)	743, 758, 788, 980, 1054
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
FspBI	CTAG	2 cut(s)	408, 761
GluI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	6 cut(s)	220, 240, 335, 647, 945, 1028
HincII	GTYRAC	2 cut(s)	1099, 1182
HindII	GTYRAC	2 cut(s)	1099, 1182
HindIII	AAGCTT	4 cut(s)	14, 148, 425, 505
HinfI	GANTC	5 cut(s)	559, 890, 917, 1075, 1183
HphI	GGTGA	4 cut(s)	425, 439, 781, 1025
Hpy166II	GTNNAC	2 cut(s)	1099, 1182
Hpy188I	TCNGA	5 cut(s)	354, 440, 567, 592, 660
Hpy188III	TCNNGA	9 cut(s)	194, 223, 242, 500, 809, 970, 1039, 1051, 1079
Hpy8I	GTNNAC	2 cut(s)	1099, 1182
Hpy99I	CGWCG	2 cut(s)	971, 1118
HpyAV	CCTTC	5 cut(s)	76, 176, 392, 957, 1153
HpyCH4III	ACNGT	4 cut(s)	587, 679, 793, 1057
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	4 cut(s)	4, 236, 362, 885
HpyF10VI	GCNNNNNNNGC	2 cut(s)	387, 1116
HpyF3I	CTNAG	4 cut(s)	146, 351, 437, 657
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	6 cut(s)	220, 240, 335, 647, 945, 1028
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	27, 160, 440, 1144
LmnI	GCTCC	2 cut(s)	253, 622
Lsp1109I	GCAGC	3 cut(s)	60, 374, 465
MaeI	CTAG	2 cut(s)	408, 761
MaeII	ACGT	1 cut(s)	113
MalI	GATC	4 cut(s)	29, 162, 442, 1146
MboI	GATC	4 cut(s)	27, 160, 440, 1144
MboII	GAAGA	5 cut(s)	406, 422, 554, 593, 1136
MflI	RGATCY	1 cut(s)	1144
MhlI	GDGCHC	3 cut(s)	258, 652, 702
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	6 cut(s)	138, 248, 290, 487, 1130, 1164
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	2 cut(s)	568, 1177
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	8 cut(s)	137, 219, 446, 504, 736, 775, 1041, 1046
Mox20I	TGGCCA	1 cut(s)	276
Mph1103I	ATGCAT	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	4 cut(s)	173, 519, 690, 1167
Msp20I	TGGCCA	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	720
MvaI	CCWGG	1 cut(s)	720
MwoI	GCNNNNNNNGC	2 cut(s)	387, 1116
NdeII	GATC	4 cut(s)	27, 160, 440, 1144
NlaIII	CATG	6 cut(s)	220, 240, 335, 647, 945, 1028
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	2 cut(s)	220, 240
NspV	TTCGAA	1 cut(s)	1073
PfeI	GAWTC	3 cut(s)	890, 917, 1075
PkrI	GCNGC	5 cut(s)	35, 75, 364, 480, 846
PleI	GAGTC	2 cut(s)	567, 1177
PpsI	GAGTC	2 cut(s)	567, 1177
PshBI	ATTAAT	1 cut(s)	1167
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspPI	GGNCC	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	1144
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SacI	GAGCTC	1 cut(s)	258
SalI	GTCGAC	1 cut(s)	1097
SaqAI	TTAA	4 cut(s)	173, 519, 690, 1167
SatI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
Sau3AI	GATC	4 cut(s)	27, 160, 440, 1144
Sau96I	GGNCC	1 cut(s)	716
SchI	GAGTC	2 cut(s)	568, 1177
ScrFI	CCNGG	1 cut(s)	720
SduI	GDGCHC	3 cut(s)	258, 652, 702
SfuI	TTCGAA	1 cut(s)	1073
SinI	GGWCC	1 cut(s)	716
SmlI	CTYRAG	6 cut(s)	223, 508, 770, 809, 848, 1154
SmoI	CTYRAG	6 cut(s)	223, 508, 770, 809, 848, 1154
Sse9I	AATT	6 cut(s)	138, 248, 290, 487, 1130, 1164
SsiI	CCGC	3 cut(s)	33, 827, 844
SspMI	CTAG	2 cut(s)	408, 761
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	718
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	4 cut(s)	587, 679, 793, 1057
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	5 cut(s)	201, 702, 969, 1073, 1098
TasI	AATT	6 cut(s)	138, 248, 290, 487, 1130, 1164
TatI	WGTACW	1 cut(s)	49
TauI	GCSGC	2 cut(s)	36, 847
TfiI	GAWTC	3 cut(s)	890, 917, 1075
Tru1I	TTAA	4 cut(s)	173, 519, 690, 1167
Tru9I	TTAA	4 cut(s)	173, 519, 690, 1167
TscAI	CASTG	1 cut(s)	684
TseI	GCWGC	3 cut(s)	73, 362, 478
TspDTI	ATGAA	6 cut(s)	195, 320, 374, 971, 982, 1041
TspGWI	ACGGA	2 cut(s)	955, 993
TspRI	CASTG	1 cut(s)	684
VpaK11BI	GGWCC	1 cut(s)	716
VspI	ATTAAT	1 cut(s)	1167
XceI	RCATGY	2 cut(s)	220, 240
XmiI	GTMKAC	1 cut(s)	1098
XspI	CTAG	2 cut(s)	408, 761
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.