Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Reverse (-)

56848010 .. 56849988

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG333900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGGAAAAGAGAGATTTGTTTGGCAGATTACCAAACGATATCATTTGCCATATCATTTCTTTTCTTCCTTCAGAATCTGCATTAGAAACCAGTTTAATTTCAAGTAGATGGAGAGGTCTATGGAACACAGCTTTGGTTCAACATGTAGCTATAGATGAAGTTCCTGATGCAGTTGCTGAGTTTCTATCTCATTTTGACAAACTTGATCCCTTGAGGCACCCCAGAAGGCTAAAGTTGTACTTCGGCGAAGGTAGTGATGTGCTCCTAGCTACCATTGCAGCCAATGATAAACTTCACTTGGATTTTTCTATAGGGAAAAAGGAGGAGGAGTACCCTCCAAGGCATTTTGATTTGCAGTTGCAGCTTAAATGTGACCAGAATGTCCAAAACCTTATAGCTCACCCACAACCTTGTGCCTCTACTTTCTCTGTCAAAACCCTTTATCTGAAATCAGTAACCAATGTTGTCAATGAGGCAATTTCTTCTATGTTTTCGAGTTTAGAGTTTCTTGAACACTTGAAGATCATTGAATGTGATGGGTTACAAAGTTTGCATATCGAGTCCAGTCCAAAGCTACTCAGCTTAAGCATCTTTGACTGTCAGCACCTCAAATCTCTCCACCTCAGAACCTCTAAACTTCGATCCTTTCATTATCGAGGTTTTCTCCCTAGGATTTGGCCAGAACATCATTTCAACCTTGCAGATGCCATGCTTGATTTCAGACTAGGCCCCGGCTACACAAGTTTCAGCAGTAGCGACTTTGATCCAATGTTGTTAACCCTAAAGAATGCTCAGGTTCTTAAATTATGCAGATGGAGTTTTCAGGCACTGATCTGGCCATTGATATCGCCTCTACAAGCAAATTTCATGTTTTATAAAGTGAAAGAGTTATGGTGGATTGATAAGGAGGAAGAAAGTTACGACAGTGATGCCTTAATCTCCTTTCTGAAATTGTGTCCTGTCTTGGAAAGACTCTTTGTAACCAATGATCCTGAAAGCTACTGCATAACAAGCACAGTTCCAACCTCAAAGATAGTCAAAAGCCATACAAAATTGGGTGATCTGAAAGTGATTAAGGCCCAGTTGGTAGAGCTGGGAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

368

Amino Acids

42.23

Weight (kDa)

6.2

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 43	2.8e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	143 - 331	7.7e-10	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	879
AasI	GACNNNNNNGTC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	219
AclWI	GGATC	4 cut(s)	203, 639, 761, 986
AcoI	YGGCCR	2 cut(s)	680, 839
AcsI	RAATTY	1 cut(s)	865
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	242, 335
AflII	CTTAAG	1 cut(s)	586
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	6 cut(s)	105, 143, 515, 523, 533, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	9 cut(s)	134, 152, 272, 367, 401, 577, 585, 1002, 1096
AluI	AGCT	9 cut(s)	134, 152, 272, 367, 401, 577, 585, 1002, 1096
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	4 cut(s)	203, 639, 761, 986
AlwNI	CAGNNNCTG	3 cut(s)	80, 179, 832
AoxI	GGCC	4 cut(s)	680, 730, 839, 1080
ApeKI	GCWGC	2 cut(s)	281, 364
ApoI	RAATTY	1 cut(s)	865
AspA2I	CCTAGG	1 cut(s)	671
AspS9I	GGNCC	2 cut(s)	731, 1081
AsuC2I	CCSGG	1 cut(s)	735
AsuHPI	GGTGA	2 cut(s)	395, 1073
AvrII	CCTAGG	1 cut(s)	671
BalI	TGGCCA	2 cut(s)	682, 841
BanI	GGYRCC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	293, 376
BccI	CCATC	3 cut(s)	105, 533, 810
BcgI	CGANNNNNNTGC	2 cut(s)	914, 948
BcnI	CCSGG	1 cut(s)	735
BfaI	CTAG	4 cut(s)	269, 672, 728, 1105
BfmI	CTRYAG	2 cut(s)	153, 312
BfrI	CTTAAG	1 cut(s)	586
BisI	GCNGC	2 cut(s)	282, 365
BlnI	CCTAGG	1 cut(s)	671
BlsI	GCNGC	2 cut(s)	283, 366
Bme1390I	CCNGG	1 cut(s)	735
BmgT120I	GGNCC	2 cut(s)	731, 1081
BmiI	GGNNCC	2 cut(s)	221, 733
BmrFI	CCNGG	1 cut(s)	735
BmrI	ACTGGG	1 cut(s)	1078
BmsI	GCATC	4 cut(s)	160, 600, 697, 922
BmuI	ACTGGG	1 cut(s)	1078
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
Bpu10I	CCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	235
BpuMI	CCSGG	1 cut(s)	735
BsaJI	CCNNGG	3 cut(s)	341, 671, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bse1I	ACTGG	3 cut(s)	93, 567, 1084
Bse3DI	GCAATG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	341, 671, 733
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	4 cut(s)	171, 595, 640, 809
BseNI	ACTGG	3 cut(s)	93, 567, 1084
BseRI	GAGGAG	2 cut(s)	341, 344
BseXI	GCAGC	2 cut(s)	293, 376
BseYI	CCCAGC	1 cut(s)	1096
BshFI	GGCC	4 cut(s)	682, 732, 841, 1082
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	4 cut(s)	682, 732, 841, 1082
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	7 cut(s)	208, 525, 644, 766, 834, 991, 1063
BspANI	GGCC	4 cut(s)	682, 732, 841, 1082
BspCNI	CTCAG	4 cut(s)	172, 594, 639, 808
BspLI	GGNNCC	2 cut(s)	221, 733
BspPI	GGATC	4 cut(s)	203, 639, 761, 986
BspT107I	GGYRCC	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	586
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	93, 567, 1084
BssECI	CCNNGG	3 cut(s)	341, 671, 733
BssMI	GATC	7 cut(s)	208, 525, 644, 766, 834, 991, 1063
BssT1I	CCWWGG	2 cut(s)	341, 671
Bst4CI	ACNGT	3 cut(s)	602, 929, 1021
BstAFI	CTTAAG	1 cut(s)	586
BstDEI	CTNAG	4 cut(s)	180, 581, 626, 795
BstKTI	GATC	7 cut(s)	211, 528, 647, 769, 837, 994, 1066
BstMBI	GATC	7 cut(s)	208, 525, 644, 766, 834, 991, 1063
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 364, 1014
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	733
BstSFI	CTRYAG	2 cut(s)	153, 312
BstV1I	GCAGC	2 cut(s)	293, 376
BsuRI	GGCC	4 cut(s)	682, 732, 841, 1082
BtsIMutI	CAGTG	2 cut(s)	830, 934
CaiI	CAGNNNCTG	3 cut(s)	80, 179, 832
Cfr13I	GGNCC	2 cut(s)	731, 1081
Csp6I	GTAC	2 cut(s)	241, 334
CviAII	CATG	3 cut(s)	146, 712, 871
CviQI	GTAC	2 cut(s)	241, 334
DdeI	CTNAG	4 cut(s)	180, 581, 626, 795
DpnI	GATC	7 cut(s)	210, 527, 646, 768, 836, 993, 1065
DpnII	GATC	7 cut(s)	208, 525, 644, 766, 834, 991, 1063
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
EaeI	YGGCCR	2 cut(s)	680, 839
Eco130I	CCWWGG	2 cut(s)	341, 671
Eco32I	GATATC	2 cut(s)	43, 849
Eco57I	CTGAAG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	731
EcoRV	GATATC	2 cut(s)	43, 849
EcoT14I	CCWWGG	2 cut(s)	341, 671
ErhI	CCWWGG	2 cut(s)	341, 671
FaeI	CATG	3 cut(s)	149, 715, 874
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FatI	CATG	3 cut(s)	145, 711, 870
Fnu4HI	GCNGC	2 cut(s)	282, 365
Fsp4HI	GCNGC	2 cut(s)	282, 365
FspBI	CTAG	4 cut(s)	269, 672, 728, 1105
GluI	GCNGC	2 cut(s)	282, 365
GsaI	CCCAGC	1 cut(s)	1100
HaeIII	GGCC	4 cut(s)	682, 732, 841, 1082
HapII	CCGG	1 cut(s)	735
Hin1II	CATG	3 cut(s)	149, 715, 874
HincII	GTYRAC	1 cut(s)	780
HindII	GTYRAC	1 cut(s)	780
HinfI	GANTC	4 cut(s)	77, 563, 975, 1101
HpaI	GTTAAC	1 cut(s)	780
HpaII	CCGG	1 cut(s)	735
HphI	GGTGA	2 cut(s)	395, 1073
Hpy166II	GTNNAC	1 cut(s)	780
Hpy188I	TCNGA	6 cut(s)	76, 450, 629, 725, 951, 1068
Hpy188III	TCNNGA	3 cut(s)	167, 512, 995
Hpy8I	GTNNAC	1 cut(s)	780
HpyAV	CCTTC	3 cut(s)	81, 222, 245
HpyCH4III	ACNGT	3 cut(s)	602, 929, 1021
HpyCH4V	TGCA	9 cut(s)	83, 173, 281, 358, 364, 556, 704, 813, 1008
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 364, 1014
HpyF3I	CTNAG	4 cut(s)	180, 581, 626, 795
Hsp92II	CATG	3 cut(s)	149, 715, 874
KspAI	GTTAAC	1 cut(s)	780
Kzo9I	GATC	7 cut(s)	208, 525, 644, 766, 834, 991, 1063
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	2 cut(s)	293, 376
LweI	GCATC	4 cut(s)	160, 600, 697, 922
MaeI	CTAG	4 cut(s)	269, 672, 728, 1105
MaeIII	GTNAC	5 cut(s)	374, 457, 543, 920, 982
MalI	GATC	7 cut(s)	210, 527, 646, 768, 836, 993, 1065
MboI	GATC	7 cut(s)	208, 525, 644, 766, 834, 991, 1063
MboII	GAAGA	4 cut(s)	59, 477, 535, 926
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	2 cut(s)	682, 841
MluCI	AATT	6 cut(s)	99, 480, 806, 865, 953, 1055
MluNI	TGGCCA	2 cut(s)	682, 841
MlyI	GAGTC	2 cut(s)	572, 969
MmeI	TCCRAC	1 cut(s)	1049
Mox20I	TGGCCA	2 cut(s)	682, 841
MscI	TGGCCA	2 cut(s)	682, 841
MseI	TTAA	7 cut(s)	98, 369, 587, 779, 804, 938, 1077
Msp20I	TGGCCA	2 cut(s)	682, 841
MspCI	CTTAAG	1 cut(s)	586
MspI	CCGG	1 cut(s)	735
MspR9I	CCNGG	1 cut(s)	735
Mva1269I	GAATGC	1 cut(s)	796
MwoI	GCNNNNNNNGC	3 cut(s)	278, 364, 1014
NciI	CCSGG	1 cut(s)	735
NdeII	GATC	7 cut(s)	208, 525, 644, 766, 834, 991, 1063
NlaIII	CATG	3 cut(s)	149, 715, 874
NlaIV	GGNNCC	2 cut(s)	221, 733
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	1 cut(s)	149
PciI	ACATGT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	77, 1101
PkrI	GCNGC	2 cut(s)	283, 366
PleI	GAGTC	2 cut(s)	571, 969
PpsI	GAGTC	2 cut(s)	571, 969
PscI	ACATGT	1 cut(s)	145
PsiI	TTATAA	1 cut(s)	879
PspFI	CCCAGC	1 cut(s)	1096
PspN4I	GGNNCC	2 cut(s)	221, 733
PspPI	GGNCC	2 cut(s)	731, 1081
PstNI	CAGNNNCTG	3 cut(s)	80, 179, 832
RsaI	GTAC	2 cut(s)	242, 335
RsaNI	GTAC	2 cut(s)	241, 334
SaqAI	TTAA	7 cut(s)	98, 369, 587, 779, 804, 938, 1077
SatI	GCNGC	2 cut(s)	282, 365
Sau3AI	GATC	7 cut(s)	208, 525, 644, 766, 834, 991, 1063
Sau96I	GGNCC	2 cut(s)	731, 1081
SchI	GAGTC	2 cut(s)	572, 969
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	4 cut(s)	160, 600, 697, 922
SfcI	CTRYAG	2 cut(s)	153, 312
SmlI	CTYRAG	2 cut(s)	214, 586
SmoI	CTYRAG	2 cut(s)	214, 586
Sse9I	AATT	6 cut(s)	99, 480, 806, 865, 953, 1055
SspMI	CTAG	4 cut(s)	269, 672, 728, 1105
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	2 cut(s)	341, 671
TaaI	ACNGT	3 cut(s)	602, 929, 1021
TaqI	TCGA	4 cut(s)	497, 561, 643, 658
TasI	AATT	6 cut(s)	99, 480, 806, 865, 953, 1055
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	77, 1101
Tru1I	TTAA	7 cut(s)	98, 369, 587, 779, 804, 938, 1077
Tru9I	TTAA	7 cut(s)	98, 369, 587, 779, 804, 938, 1077
TscAI	CASTG	2 cut(s)	837, 934
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	2 cut(s)	281, 364
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	174, 641, 859
TspRI	CASTG	2 cut(s)	837, 934
Vha464I	CTTAAG	1 cut(s)	586
XapI	RAATTY	1 cut(s)	865
XceI	RCATGY	1 cut(s)	149
XmaJI	CCTAGG	1 cut(s)	671
XspI	CTAG	4 cut(s)	269, 672, 728, 1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.