Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Reverse (-)

20590568 .. 20592321

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18090.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGTGAAGCGAAGAACCTACCCTTCATGTAAACTTAGTCGAATAGCTAGAGGTATGGAGAAGGAAATAGCAGATGATTTGTTTGGCAAATTACCAAATGAAATCATTTGCAGAATTATTTCTTTTCTCCCTTCAGAATCTGCATTAGAAACCAGTTTAATCTCAAGTATGTGGAGAGGCCTATGGAATACAACTTTAGCGAAGCAGATCACTACAGATGATGATGCAGCTGATGCAGTTTTTGAATTTGTCTCTCACTTTAACCAGCATGATCCCTTAGGGCATCCCAGAAAGCTGCAACTGCACTTCGGCAAACTTGGTGATCTCCTTTTGGCTACAGTTTCACCTAACAATAAACTCCGTCTGGAGTTTTCGACAGAGAATCGGGAAACTCCAAGGCATTTTGGCTGGCACTTGAAGCTGAATCACCAAAGGGACCAAACCCTAGTTTCTCACCAGCCTTCTCCCTCTACTTTCTTTGTCAAATTTCTTTACCTAAAATCAGTGAGCTCTTTTGGAAATGAAGCAGTTTCTTCTATGATTCCGTGTTTCGAATTTCTCGAAAACTTGAAGATCATTGAATGTGAGGAGTTACAATCTTTGCATATCGAGTCCAGTCCAAGGCTACTTAGCTTGACCATCTTTGACTGCCAGAATCTCAAGTCTCTCCACCTCAAAACTTCCAAACTTCGATCTTTTCGATACCGCGGTTTTCTCCCTCATATTTGGACGGAACATCATTTTAACTTGGCAGACGCCATGCTTGATTTCAGGCAAGGCCCTGGCTACGGCGGATTCAAAAGTAGCGACTTTGATCCTATGTTGTTAACCATTAAAAATGCTCAAGTTCTCACTCTATGCAAATGGACTTTCCAGACACTGATCTGGCCATCCCTTTTGCCTCTACAAGCAAACTTCATATTCTACAAGCTGAAAGAGCTATGGTGGATTGATAACTGGGAAGAAAGATTCAGCATCGATCCTCTAATATCCTTCATTAAATTATGTCCAGCTTTGGAGCAACTCTATGTAACTAATGATCCTAAAAGCTACTGCATGGCATGGACAGCTCCACCGTGGAAGAAAGTCAATGGCCAAACAAAATTGGCCCATCTGAAAGTGATAAAGTTGGTGGGGTTTACTACTGAAGATGATGAAACCACTTTGGCAGAGCATATAAGAGATCTAGTTACAGTGGAGCCACTGATAATTAGCAGCATCAAGACTGAGAAAAGAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

414

Amino Acids

47.77

Weight (kDa)

8.05

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	708
AciI	CCGC	3 cut(s)	706, 708, 792
AclWI	GGATC	4 cut(s)	266, 809, 974, 1034
AcoI	YGGCCR	2 cut(s)	887, 1093
AcsI	RAATTY	3 cut(s)	245, 485, 554
AcuI	CTGAAG	2 cut(s)	117, 1167
AcyI	GRCGYC	1 cut(s)	756
AfiI	CCNNNNNNNGG	2 cut(s)	621, 788
AgsI	TTSAA	5 cut(s)	245, 418, 571, 581, 799
AjnI	CCWGG	1 cut(s)	781
Alw21I	GWGCWC	1 cut(s)	512
Alw26I	GTCTC	2 cut(s)	256, 669
AlwI	GGATC	4 cut(s)	266, 809, 974, 1034
AlwNI	CAGNNNCTG	2 cut(s)	140, 880
AoxI	GGCC	5 cut(s)	178, 778, 887, 1093, 1107
ApeKI	GCWGC	3 cut(s)	227, 295, 1215
ApoI	RAATTY	3 cut(s)	245, 485, 554
Asp700I	GAANNNNTTC	1 cut(s)	118
AspS9I	GGNCC	3 cut(s)	436, 779, 1108
AsuHPI	GGTGA	5 cut(s)	16, 332, 336, 419, 446
AsuII	TTCGAA	1 cut(s)	552
AvaII	GGWCC	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	277
BaeI	ACNNNNGTAYC	2 cut(s)	694, 727
BalI	TGGCCA	2 cut(s)	889, 1095
BanII	GRGCYC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	512
BbvI	GCAGC	3 cut(s)	239, 282, 1227
BccI	CCATC	3 cut(s)	647, 898, 1119
BceAI	ACGGC	1 cut(s)	805
BciT130I	CCWGG	1 cut(s)	783
BcoDI	GTCTC	2 cut(s)	256, 669
BfaI	CTAG	3 cut(s)	48, 446, 1187
BfmI	CTRYAG	2 cut(s)	213, 336
BglII	AGATCT	1 cut(s)	1183
BisI	GCNGC	3 cut(s)	228, 296, 1216
BlsI	GCNGC	3 cut(s)	229, 297, 1217
Bme1390I	CCNGG	1 cut(s)	783
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	3 cut(s)	436, 779, 1108
BmiI	GGNNCC	2 cut(s)	437, 1200
BmrFI	CCNGG	1 cut(s)	783
BmrI	ACTGGG	1 cut(s)	967
BmsI	GCATC	5 cut(s)	214, 223, 292, 984, 1227
BmuI	ACTGGG	1 cut(s)	967
BpmI	CTGGAG	1 cut(s)	386
Bpu14I	TTCGAA	1 cut(s)	552
BpuEI	CTTGAG	3 cut(s)	148, 644, 828
Bsa29I	ATCGAT	1 cut(s)	978
BsaHI	GRCGYC	1 cut(s)	756
BsaJI	CCNNGG	5 cut(s)	395, 620, 706, 781, 1076
Bsc4I	CCNNNNNNNGG	2 cut(s)	621, 788
Bse1I	ACTGG	3 cut(s)	153, 615, 962
Bse21I	CCTNAGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	783
BseCI	ATCGAT	1 cut(s)	978
BseDI	CCNNGG	5 cut(s)	395, 620, 706, 781, 1076
BseGI	GGATG	2 cut(s)	283, 890
BseLI	CCNNNNNNNGG	2 cut(s)	621, 788
BseMII	CTCAG	1 cut(s)	1218
BseNI	ACTGG	3 cut(s)	153, 615, 962
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	3 cut(s)	239, 282, 1227
BsgI	GTGCAG	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	708
BshFI	GGCC	5 cut(s)	180, 780, 889, 1095, 1109
BshVI	ATCGAT	1 cut(s)	978
BsiHKAI	GWGCWC	1 cut(s)	512
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	621, 788
BsmAI	GTCTC	2 cut(s)	256, 669
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	5 cut(s)	180, 780, 889, 1095, 1109
Bsp119I	TTCGAA	1 cut(s)	552
Bsp1286I	GDGCHC	1 cut(s)	512
BspACI	CCGC	3 cut(s)	706, 708, 792
BspANI	GGCC	5 cut(s)	180, 780, 889, 1095, 1109
BspCNI	CTCAG	1 cut(s)	1219
BspDI	ATCGAT	1 cut(s)	978
BspFNI	CGCG	1 cut(s)	708
BspLI	GGNNCC	2 cut(s)	437, 1200
BspPI	GGATC	4 cut(s)	266, 809, 974, 1034
BspT104I	TTCGAA	1 cut(s)	552
BsrI	ACTGG	3 cut(s)	153, 615, 962
BssECI	CCNNGG	5 cut(s)	395, 620, 706, 781, 1076
BssNI	GRCGYC	1 cut(s)	756
BssT1I	CCWWGG	2 cut(s)	395, 620
Bst2UI	CCWGG	1 cut(s)	783
Bst4CI	ACNGT	3 cut(s)	340, 1077, 1195
BstACI	GRCGYC	1 cut(s)	756
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstBI	TTCGAA	1 cut(s)	552
BstC8I	GCNNGC	1 cut(s)	410
BstDEI	CTNAG	4 cut(s)	35, 277, 629, 1227
BstDSI	CCRYGG	2 cut(s)	706, 1076
BstF5I	GGATG	2 cut(s)	283, 890
BstFNI	CGCG	1 cut(s)	708
BstMAI	GTCTC	2 cut(s)	256, 669
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 301, 418, 937, 1067
BstNI	CCWGG	1 cut(s)	783
BstSCI	CCNGG	1 cut(s)	781
BstSFI	CTRYAG	2 cut(s)	213, 336
BstUI	CGCG	1 cut(s)	708
BstV1I	GCAGC	3 cut(s)	239, 282, 1227
BstX2I	RGATCY	1 cut(s)	1183
BstYI	RGATCY	1 cut(s)	1183
Bsu15I	ATCGAT	1 cut(s)	978
Bsu36I	CCTNAGG	1 cut(s)	277
BsuRI	GGCC	5 cut(s)	180, 780, 889, 1095, 1109
BsuTUI	ATCGAT	1 cut(s)	978
BtgI	CCRYGG	2 cut(s)	706, 1076
BtsCI	GGATG	2 cut(s)	283, 890
BtsIMutI	CAGTG	4 cut(s)	510, 878, 1200, 1202
Cac8I	GCNNGC	1 cut(s)	410
CaiI	CAGNNNCTG	2 cut(s)	140, 880
Cfr13I	GGNCC	3 cut(s)	436, 779, 1108
Cfr42I	CCGCGG	1 cut(s)	709
ClaI	ATCGAT	1 cut(s)	978
CseI	GACGC	1 cut(s)	764
CviAII	CATG	5 cut(s)	27, 269, 760, 1057, 1062
DdeI	CTNAG	4 cut(s)	35, 277, 629, 1227
EaeI	YGGCCR	2 cut(s)	887, 1093
EciI	GGCGGA	1 cut(s)	807
Ecl136II	GAGCTC	1 cut(s)	510
Eco130I	CCWWGG	2 cut(s)	395, 620
Eco147I	AGGCCT	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	512
Eco47I	GGWCC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	510
Eco57I	CTGAAG	2 cut(s)	117, 1167
Eco81I	CCTNAGG	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	779
EcoRII	CCWGG	1 cut(s)	781
EcoT14I	CCWWGG	2 cut(s)	395, 620
EcoT38I	GRGCYC	1 cut(s)	512
ErhI	CCWWGG	2 cut(s)	395, 620
FaeI	CATG	5 cut(s)	30, 272, 763, 1060, 1065
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	5 cut(s)	26, 268, 759, 1056, 1061
Fnu4HI	GCNGC	3 cut(s)	228, 296, 1216
FokI	GGATG	2 cut(s)	270, 877
FriOI	GRGCYC	1 cut(s)	512
Fsp4HI	GCNGC	3 cut(s)	228, 296, 1216
FspBI	CTAG	3 cut(s)	48, 446, 1187
GluI	GCNGC	3 cut(s)	228, 296, 1216
GsuI	CTGGAG	1 cut(s)	386
HaeIII	GGCC	5 cut(s)	180, 780, 889, 1095, 1109
HgaI	GACGC	1 cut(s)	764
Hin1I	GRCGYC	1 cut(s)	756
Hin1II	CATG	5 cut(s)	30, 272, 763, 1060, 1065
HincII	GTYRAC	1 cut(s)	828
HindII	GTYRAC	1 cut(s)	828
HinfI	GANTC	8 cut(s)	137, 382, 424, 541, 611, 655, 795, 969
HpaI	GTTAAC	1 cut(s)	828
HphI	GGTGA	5 cut(s)	16, 332, 336, 419, 446
Hpy166II	GTNNAC	3 cut(s)	32, 828, 1140
Hpy188I	TCNGA	2 cut(s)	136, 1116
Hpy188III	TCNNGA	5 cut(s)	365, 386, 560, 874, 1222
Hpy8I	GTNNAC	3 cut(s)	32, 828, 1140
HpyAV	CCTTC	5 cut(s)	33, 55, 141, 471, 1003
HpyCH4III	ACNGT	3 cut(s)	340, 1077, 1195
HpyCH4V	TGCA	9 cut(s)	111, 143, 227, 236, 298, 304, 604, 861, 1056
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 301, 418, 937, 1067
HpyF3I	CTNAG	4 cut(s)	35, 277, 629, 1227
Hsp92I	GRCGYC	1 cut(s)	756
Hsp92II	CATG	5 cut(s)	30, 272, 763, 1060, 1065
KspAI	GTTAAC	1 cut(s)	828
KspI	CCGCGG	1 cut(s)	709
LmnI	GCTCC	3 cut(s)	1018, 1075, 1198
Lsp1109I	GCAGC	3 cut(s)	239, 282, 1227
LweI	GCATC	5 cut(s)	214, 223, 292, 984, 1227
MaeI	CTAG	3 cut(s)	48, 446, 1187
MaeIII	GTNAC	3 cut(s)	591, 1030, 1189
MboII	GAAGA	6 cut(s)	24, 525, 583, 974, 1093, 1160
MflI	RGATCY	1 cut(s)	1183
MhlI	GDGCHC	1 cut(s)	512
MlsI	TGGCCA	2 cut(s)	889, 1095
MluCI	AATT	8 cut(s)	89, 114, 245, 485, 554, 1001, 1103, 1209
MluNI	TGGCCA	2 cut(s)	889, 1095
MlyI	GAGTC	1 cut(s)	620
MnlI	CCTC	8 cut(s)	44, 170, 478, 580, 683, 729, 912, 993
Mox20I	TGGCCA	2 cut(s)	889, 1095
MroXI	GAANNNNTTC	1 cut(s)	118
MscI	TGGCCA	2 cut(s)	889, 1095
MseI	TTAA	6 cut(s)	158, 261, 744, 827, 834, 999
Msp20I	TGGCCA	2 cut(s)	889, 1095
MspA1I	CMGCKG	2 cut(s)	230, 708
MspR9I	CCNGG	1 cut(s)	783
MvaI	CCWGG	1 cut(s)	783
MvnI	CGCG	1 cut(s)	708
MwoI	GCNNNNNNNGC	5 cut(s)	233, 301, 418, 937, 1067
NlaIII	CATG	5 cut(s)	30, 272, 763, 1060, 1065
NlaIV	GGNNCC	2 cut(s)	437, 1200
NspV	TTCGAA	1 cut(s)	552
PceI	AGGCCT	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	2 cut(s)	558, 697
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	7 cut(s)	137, 382, 424, 541, 655, 795, 969
PkrI	GCNGC	3 cut(s)	229, 297, 1217
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
Psp124BI	GAGCTC	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	781
PspGI	CCWGG	1 cut(s)	781
PspN4I	GGNNCC	2 cut(s)	437, 1200
PspPI	GGNCC	3 cut(s)	436, 779, 1108
PstNI	CAGNNNCTG	2 cut(s)	140, 880
PsuI	RGATCY	1 cut(s)	1183
PvuII	CAGCTG	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	512
SacII	CCGCGG	1 cut(s)	709
SaqAI	TTAA	6 cut(s)	158, 261, 744, 827, 834, 999
SatI	GCNGC	3 cut(s)	228, 296, 1216
Sau96I	GGNCC	3 cut(s)	436, 779, 1108
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	783
SduI	GDGCHC	1 cut(s)	512
SfaNI	GCATC	5 cut(s)	214, 223, 292, 984, 1227
SfcI	CTRYAG	2 cut(s)	213, 336
Sfr303I	CCGCGG	1 cut(s)	709
SfuI	TTCGAA	1 cut(s)	552
SgrBI	CCGCGG	1 cut(s)	709
SinI	GGWCC	1 cut(s)	436
SmlI	CTYRAG	3 cut(s)	163, 659, 843
SmoI	CTYRAG	3 cut(s)	163, 659, 843
Sse9I	AATT	8 cut(s)	89, 114, 245, 485, 554, 1001, 1103, 1209
SseBI	AGGCCT	1 cut(s)	180
SsiI	CCGC	3 cut(s)	706, 708, 792
SspMI	CTAG	3 cut(s)	48, 446, 1187
SstI	GAGCTC	1 cut(s)	512
StuI	AGGCCT	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	781
StyI	CCWWGG	2 cut(s)	395, 620
TaaI	ACNGT	3 cut(s)	340, 1077, 1195
TaqI	TCGA	8 cut(s)	40, 374, 552, 561, 609, 691, 700, 978
TasI	AATT	8 cut(s)	89, 114, 245, 485, 554, 1001, 1103, 1209
TfiI	GAWTC	7 cut(s)	137, 382, 424, 541, 655, 795, 969
Tru1I	TTAA	6 cut(s)	158, 261, 744, 827, 834, 999
Tru9I	TTAA	6 cut(s)	158, 261, 744, 827, 834, 999
TscAI	CASTG	4 cut(s)	510, 885, 1200, 1209
TseI	GCWGC	3 cut(s)	227, 295, 1215
TspDTI	ATGAA	6 cut(s)	15, 114, 537, 907, 985, 1170
TspGWI	ACGGA	3 cut(s)	350, 534, 746
TspRI	CASTG	4 cut(s)	510, 885, 1200, 1209
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	3 cut(s)	245, 485, 554
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	3 cut(s)	48, 446, 1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.