Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Forward (+)

35935269 .. 35937414

Gene Structure 2146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGCAGGAGGGAAAGCTTGATGATTTGATCAGCAGCTTACCATTTGAAATACAGAAAAGAGTTGTTTCCTTGCTGCCATTGAAGGAAGCAGTAAGAACAAGCACTCTTTCTATATTTTGGAGAAGCCTCTGGTTTCCAATTCAGCTAAGCTTGGATTTTGATCCAAACCCATTGACCAATGAAGGGTCTGGTCAAGAAATCGAACAGGTTATGGGCACGTTCTTGAGATCTTATGCATGTCCAGAAATATTGGAACTCAATCTCAAAGTCCTTGGCCATATCAATAAAGAATTGGTTGTCAAAGCTACCAAGGGGGTTGAGCAAGAGCTTCATGTTGAGTTCCTTGAAACTCAGAATGTTGCAGCAAAAACCTGTTTGTGCCTTCATAGCAATCCAGCCCAAAAATCTAGTTTCTTCGAGGTCAAGCTTCTTCACCTCAGATCAGTCACCCATCTTTCCAAACCTTTGGTTTCTATGCTGCTTTCAAATTGTAATGTTCTTGAAAGCTTGAGGCTTGTTAAATGTAGAGAGTTGGAGAGCCTTGAAGTAGAGACAGAGAGTCTTCAGAGCTTGGTGGTGGAAGACTGTTCAGATATTTCTGCTATTGTGGTTTCTGCTCCAAATCTAATATCTTTTGAGTATCATGGTGGTCTTGCTCAGATTGAGATGAAGAACACAGTGAGCTTGGTTGATGTTGTGCTTGATTTGAGAGATGGACCAGGAAGTAATGAGTTTGATTGTGAGGATGTCTTGCCCATCCTAGCTTCTCTCAAGGATGTTGAGGTTCTCACCATAAGTGGCTGGCTTCTTGAGTGGTTGTGTTCGGCGGGAGTGATATTTGGGCGGCTTGAGTTTCAGTTCAACAAACTAAAGGAGTTGAGTTGCATTGATTCTGTTATCAGTAAGGACAAAAGGGATTCTCTTGCCTGCTTCCTAAACTCATGTCCTTCCTTGATGAAGTTGTCCGTCGAGATTGAGAGCAAGCTGAACTTCATCCCCAGTCCGTGCTTCCATCAATACTGGCATGAACCTCACCTCTGGATGGACTTCACGACTGTAAAGACAAATACTTCGAATCTTGAACGGCTCGAAAGTGTCGACTTGGTTGGCTTCGTCGGCAAAGAAGATGAATTGCTACTAATGGATCTCTTACTTGAGAAGGCAGTTAATCTCAACTCGTTGACTCTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

397

Amino Acids

44.61

Weight (kDa)

4.83

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	117 - 215	1.3e-08	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	136 - 396	1.8e-15	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1098
AciI	CCGC	2 cut(s)	827, 844
AclWI	GGATC	2 cut(s)	155, 1152
AcoI	YGGCCR	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	548
AfiI	CCNNNNNNNGG	2 cut(s)	183, 1042
AgsI	TTSAA	8 cut(s)	47, 82, 347, 486, 503, 545, 862, 1082
AhdI	GACNNNNNGTC	1 cut(s)	558
AjnI	CCWGG	1 cut(s)	718
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	155, 1152
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	4 cut(s)	33, 73, 362, 478
ArsI	GACNNNNNNTTYG	2 cut(s)	1054, 1086
AspS9I	GGNCC	1 cut(s)	716
AsuHPI	GGTGA	4 cut(s)	425, 439, 781, 1025
AsuII	TTCGAA	1 cut(s)	1073
AvaII	GGWCC	1 cut(s)	716
BaeGI	GKGCMC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	554, 588
BbvI	GCAGC	4 cut(s)	45, 60, 374, 465
BccI	CCATC	5 cut(s)	459, 707, 764, 1020, 1036
BceAI	ACGGC	1 cut(s)	1100
BciT130I	CCWGG	1 cut(s)	720
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	2 cut(s)	408, 761
BglII	AGATCT	1 cut(s)	227
BisI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	5 cut(s)	35, 75, 364, 480, 846
Bme1390I	CCNGG	1 cut(s)	720
Bme18I	GGWCC	1 cut(s)	716
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmgT120I	GGNCC	1 cut(s)	716
BmrFI	CCNGG	1 cut(s)	720
BmrI	ACTGGG	1 cut(s)	993
BmuI	ACTGGG	1 cut(s)	993
BpiI	GAAGAC	2 cut(s)	554, 588
Bpu1102I	GCTNAGC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	1073
BpuEI	CTTGAG	6 cut(s)	244, 529, 755, 830, 869, 1175
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	271, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 1042
Bse1I	ACTGG	2 cut(s)	999, 1025
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	2 cut(s)	271, 309
BseGI	GGATG	5 cut(s)	751, 756, 781, 993, 1047
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	183, 1042
BseMII	CTCAG	3 cut(s)	365, 451, 671
BseNI	ACTGG	2 cut(s)	999, 1025
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	4 cut(s)	45, 60, 374, 465
BshFI	GGCC	1 cut(s)	276
BslI	CCNNNNNNNGG	2 cut(s)	183, 1042
BsmAI	GTCTC	1 cut(s)	545
BsnI	GGCC	1 cut(s)	276
Bsp119I	TTCGAA	1 cut(s)	1073
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	5 cut(s)	27, 160, 227, 440, 1144
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	2 cut(s)	827, 844
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	3 cut(s)	364, 450, 670
BspPI	GGATC	2 cut(s)	155, 1152
BspT104I	TTCGAA	1 cut(s)	1073
BsrI	ACTGG	2 cut(s)	999, 1025
BssECI	CCNNGG	2 cut(s)	271, 309
BssMI	GATC	5 cut(s)	27, 160, 227, 440, 1144
BssT1I	CCWWGG	2 cut(s)	271, 309
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	3 cut(s)	587, 679, 1057
BstBI	TTCGAA	1 cut(s)	1073
BstC8I	GCNNGC	3 cut(s)	803, 928, 983
BstDEI	CTNAG	4 cut(s)	146, 351, 437, 657
BstF5I	GGATG	5 cut(s)	751, 756, 781, 993, 1047
BstKTI	GATC	5 cut(s)	30, 163, 230, 443, 1147
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	5 cut(s)	27, 160, 227, 440, 1144
BstMWI	GCNNNNNNNGC	2 cut(s)	387, 1116
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	718
BstSLI	GKGCMC	1 cut(s)	218
BstV1I	GCAGC	4 cut(s)	45, 60, 374, 465
BstV2I	GAAGAC	2 cut(s)	554, 588
BstX2I	RGATCY	2 cut(s)	227, 1144
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	2 cut(s)	227, 1144
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	5 cut(s)	751, 756, 781, 993, 1047
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	3 cut(s)	803, 928, 983
Cfr13I	GGNCC	1 cut(s)	716
CviAII	CATG	5 cut(s)	237, 332, 644, 942, 1025
DdeI	CTNAG	4 cut(s)	146, 351, 437, 657
DpnI	GATC	5 cut(s)	29, 162, 229, 442, 1146
DpnII	GATC	5 cut(s)	27, 160, 227, 440, 1144
DriI	GACNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	558
Eco130I	CCWWGG	2 cut(s)	271, 309
Eco47I	GGWCC	1 cut(s)	716
Eco57I	CTGAAG	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	2 cut(s)	271, 309
EcoT22I	ATGCAT	1 cut(s)	238
ErhI	CCWWGG	2 cut(s)	271, 309
FaeI	CATG	5 cut(s)	240, 335, 647, 945, 1028
FalI	AAGNNNNNCTT	2 cut(s)	974, 1006
FatI	CATG	5 cut(s)	236, 331, 643, 941, 1024
FauI	CCCGC	1 cut(s)	820
FbaI	TGATCA	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	1098
Fnu4HI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
FokI	GGATG	5 cut(s)	743, 758, 788, 980, 1054
Fsp4HI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
FspBI	CTAG	2 cut(s)	408, 761
GluI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	240, 335, 647, 945, 1028
HincII	GTYRAC	2 cut(s)	1099, 1182
HindII	GTYRAC	2 cut(s)	1099, 1182
HindIII	AAGCTT	4 cut(s)	14, 148, 425, 505
HinfI	GANTC	5 cut(s)	559, 890, 917, 1075, 1183
HphI	GGTGA	4 cut(s)	425, 439, 781, 1025
Hpy166II	GTNNAC	2 cut(s)	1099, 1182
Hpy188I	TCNGA	5 cut(s)	354, 440, 567, 592, 660
Hpy188III	TCNNGA	9 cut(s)	194, 223, 242, 500, 809, 970, 1039, 1051, 1079
Hpy8I	GTNNAC	2 cut(s)	1099, 1182
Hpy99I	CGWCG	2 cut(s)	971, 1118
HpyAV	CCTTC	5 cut(s)	76, 176, 392, 957, 1153
HpyCH4III	ACNGT	3 cut(s)	587, 679, 1057
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	4, 236, 362, 885
HpyF10VI	GCNNNNNNNGC	2 cut(s)	387, 1116
HpyF3I	CTNAG	4 cut(s)	146, 351, 437, 657
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	5 cut(s)	240, 335, 647, 945, 1028
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	5 cut(s)	27, 160, 227, 440, 1144
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	4 cut(s)	45, 60, 374, 465
MaeI	CTAG	2 cut(s)	408, 761
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	5 cut(s)	29, 162, 229, 442, 1146
MboI	GATC	5 cut(s)	27, 160, 227, 440, 1144
MboII	GAAGA	6 cut(s)	406, 422, 554, 593, 682, 1136
MflI	RGATCY	2 cut(s)	227, 1144
MhlI	GDGCHC	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	4 cut(s)	138, 290, 487, 1130
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	2 cut(s)	568, 1177
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	8 cut(s)	137, 412, 446, 504, 736, 775, 1041, 1046
Mox20I	TGGCCA	1 cut(s)	276
Mph1103I	ATGCAT	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	2 cut(s)	519, 1167
Msp20I	TGGCCA	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	720
MvaI	CCWGG	1 cut(s)	720
MwoI	GCNNNNNNNGC	2 cut(s)	387, 1116
NdeII	GATC	5 cut(s)	27, 160, 227, 440, 1144
NlaIII	CATG	5 cut(s)	240, 335, 647, 945, 1028
NmuCI	GTSAC	1 cut(s)	445
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	1 cut(s)	240
NspV	TTCGAA	1 cut(s)	1073
PcsI	WCGNNNNNNNCGW	1 cut(s)	1095
PfeI	GAWTC	3 cut(s)	890, 917, 1075
PkrI	GCNGC	5 cut(s)	35, 75, 364, 480, 846
PleI	GAGTC	2 cut(s)	567, 1177
PpsI	GAGTC	2 cut(s)	567, 1177
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspPI	GGNCC	1 cut(s)	716
PsuI	RGATCY	2 cut(s)	227, 1144
SalI	GTCGAC	1 cut(s)	1097
SaqAI	TTAA	2 cut(s)	519, 1167
SatI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
Sau3AI	GATC	5 cut(s)	27, 160, 227, 440, 1144
Sau96I	GGNCC	1 cut(s)	716
SchI	GAGTC	2 cut(s)	568, 1177
ScrFI	CCNGG	1 cut(s)	720
SduI	GDGCHC	1 cut(s)	218
SfuI	TTCGAA	1 cut(s)	1073
SinI	GGWCC	1 cut(s)	716
SmlI	CTYRAG	6 cut(s)	223, 508, 770, 809, 848, 1154
SmoI	CTYRAG	6 cut(s)	223, 508, 770, 809, 848, 1154
Sse9I	AATT	4 cut(s)	138, 290, 487, 1130
SsiI	CCGC	2 cut(s)	827, 844
SspI	AATATT	1 cut(s)	249
SspMI	CTAG	2 cut(s)	408, 761
StyD4I	CCNGG	1 cut(s)	718
StyI	CCWWGG	2 cut(s)	271, 309
TaaI	ACNGT	3 cut(s)	587, 679, 1057
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	6 cut(s)	201, 417, 969, 1073, 1089, 1098
TasI	AATT	4 cut(s)	138, 290, 487, 1130
TauI	GCSGC	1 cut(s)	847
TfiI	GAWTC	3 cut(s)	890, 917, 1075
Tru1I	TTAA	2 cut(s)	519, 1167
Tru9I	TTAA	2 cut(s)	519, 1167
TscAI	CASTG	1 cut(s)	684
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	4 cut(s)	33, 73, 362, 478
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	8 cut(s)	195, 320, 374, 683, 971, 982, 1041, 1143
TspGWI	ACGGA	2 cut(s)	955, 993
TspRI	CASTG	1 cut(s)	684
VpaK11BI	GGWCC	1 cut(s)	716
XceI	RCATGY	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	1098
XspI	CTAG	2 cut(s)	408, 761
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.