Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Reverse (-)

55204032 .. 55205974

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG326900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAGGAAAAGAGAGATTTGTTTGGCAGATTACCAAACGATATCATTTGCCATATCATTTCTTTTCTTCCTTCAGAATCTGCATTAGAAACCAGTTTGATTTCAAGTAGATGGAGAGGTCTATGGAACACAGCTTTGGTTCAACATGTAGCTATAGATGAAGTTCCTGATGCAGTTGCTGAGTTTCTATCTCATTTTGACAAACTTGATCCCTTGAGGCACCCCAGAAGGCTAAAGTTGTACTTCGGCGAAGGTAGTGATGTGCTCCTAGCTACCATTGCAGCCAATGATAAACTTCACTTGGATTTTTCTATAGGGAAAAAGGAGGAGGAGTACCCTCCAAGGCATTTTGATTTGCAGTTGCAGCTTAAATGTGACCAGAATGTCCAAAACCTTATAGCTCACCCCCAACCTTGCGCCTCTACTTTCTCTGTCAAAACCCTTTATCTGAAATCAGTAACCAATGTTGTCAATGAGGCAATTTCTTCTATGTTTTCGAGTTTAGAGTTTCTTGAACACTTGAAGATCATTGAATGTGATGGGTTACAAAGTTTGCATATCGAATCCAGTCCAAAGCTACTCAGCTTAAGCATCTTTGACTGTCAGCACCTCAAATCTCTCCACCTCAGAACCTCTAAACTTCGATCCTTTCATTATCGAGGTTTTCTCCCTAGGATTTGGCCAGAACATCATTTCAACCTTGCAGATGCCATGCTTGATTTCAGACTAGGCCCCGGCTACACAAGTTTCAGCAGTAGCGACTTTGATCCAATGTTGTTAACCCTAAAGAATGCTCAGGTTCTTAAATTATGCAGATGGGGTTTTCAGGTTTGTTTAGTAGCTTTTGCACTTTCTACTAGCTCTGGCTTCGCGAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

293

Amino Acids

33.39

Weight (kDa)

6.53

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 43	2e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	143 - 222	6.6e-07	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	219
AccII	CGCG	1 cut(s)	872
AclWI	GGATC	3 cut(s)	203, 639, 761
AcoI	YGGCCR	1 cut(s)	680
AcsI	RAATTY	1 cut(s)	875
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	242, 335
AflII	CTTAAG	1 cut(s)	586
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	6 cut(s)	105, 143, 515, 523, 533, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	119, 151
AluBI	AGCT	9 cut(s)	134, 152, 272, 367, 401, 577, 585, 842, 861
AluI	AGCT	9 cut(s)	134, 152, 272, 367, 401, 577, 585, 842, 861
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	3 cut(s)	203, 639, 761
AlwNI	CAGNNNCTG	2 cut(s)	80, 179
AoxI	GGCC	2 cut(s)	680, 730
ApeKI	GCWGC	2 cut(s)	281, 364
ApoI	RAATTY	1 cut(s)	875
AspA2I	CCTAGG	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	731
AsuC2I	CCSGG	1 cut(s)	735
AsuHPI	GGTGA	1 cut(s)	395
AvrII	CCTAGG	1 cut(s)	671
BalI	TGGCCA	1 cut(s)	682
BanI	GGYRCC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	293, 376
BccI	CCATC	3 cut(s)	105, 533, 810
BcnI	CCSGG	1 cut(s)	735
BfaI	CTAG	4 cut(s)	269, 672, 728, 858
BfmI	CTRYAG	2 cut(s)	153, 312
BfrI	CTTAAG	1 cut(s)	586
BisI	GCNGC	2 cut(s)	282, 365
BlnI	CCTAGG	1 cut(s)	671
BlsI	GCNGC	2 cut(s)	283, 366
Bme1390I	CCNGG	1 cut(s)	735
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	2 cut(s)	221, 733
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	3 cut(s)	160, 600, 697
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
Bpu10I	CCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	235
BpuMI	CCSGG	1 cut(s)	735
BsaJI	CCNNGG	3 cut(s)	341, 671, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bse1I	ACTGG	2 cut(s)	93, 567
Bse3DI	GCAATG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	341, 671, 733
BseMI	GCAATG	1 cut(s)	276
BseMII	CTCAG	4 cut(s)	171, 595, 640, 809
BseNI	ACTGG	2 cut(s)	93, 567
BseRI	GAGGAG	2 cut(s)	341, 344
BseXI	GCAGC	2 cut(s)	293, 376
Bsh1236I	CGCG	1 cut(s)	872
BshFI	GGCC	2 cut(s)	682, 732
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	735
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	2 cut(s)	682, 732
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	208, 525, 644, 766
Bsp68I	TCGCGA	1 cut(s)	872
BspANI	GGCC	2 cut(s)	682, 732
BspCNI	CTCAG	4 cut(s)	172, 594, 639, 808
BspFNI	CGCG	1 cut(s)	872
BspLI	GGNNCC	2 cut(s)	221, 733
BspPI	GGATC	3 cut(s)	203, 639, 761
BspT107I	GGYRCC	1 cut(s)	219
BspTI	CTTAAG	1 cut(s)	586
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	93, 567
BssECI	CCNNGG	3 cut(s)	341, 671, 733
BssMI	GATC	4 cut(s)	208, 525, 644, 766
BssT1I	CCWWGG	2 cut(s)	341, 671
Bst4CI	ACNGT	1 cut(s)	602
BstAFI	CTTAAG	1 cut(s)	586
BstDEI	CTNAG	4 cut(s)	180, 581, 626, 795
BstFNI	CGCG	1 cut(s)	872
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	4 cut(s)	211, 528, 647, 769
BstMBI	GATC	4 cut(s)	208, 525, 644, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 364
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	733
BstSFI	CTRYAG	2 cut(s)	153, 312
BstUI	CGCG	1 cut(s)	872
BstV1I	GCAGC	2 cut(s)	293, 376
BsuRI	GGCC	2 cut(s)	682, 732
BtuMI	TCGCGA	1 cut(s)	872
CaiI	CAGNNNCTG	2 cut(s)	80, 179
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	731
Csp6I	GTAC	2 cut(s)	241, 334
CviAII	CATG	2 cut(s)	146, 712
CviQI	GTAC	2 cut(s)	241, 334
DdeI	CTNAG	4 cut(s)	180, 581, 626, 795
DpnI	GATC	4 cut(s)	210, 527, 646, 768
DpnII	GATC	4 cut(s)	208, 525, 644, 766
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
EaeI	YGGCCR	1 cut(s)	680
Eco130I	CCWWGG	2 cut(s)	341, 671
Eco32I	GATATC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	731
EcoRV	GATATC	1 cut(s)	43
EcoT14I	CCWWGG	2 cut(s)	341, 671
ErhI	CCWWGG	2 cut(s)	341, 671
FaeI	CATG	2 cut(s)	149, 715
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FatI	CATG	2 cut(s)	145, 711
Fnu4HI	GCNGC	2 cut(s)	282, 365
Fsp4HI	GCNGC	2 cut(s)	282, 365
FspBI	CTAG	4 cut(s)	269, 672, 728, 858
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	2 cut(s)	282, 365
HaeIII	GGCC	2 cut(s)	682, 732
HapII	CCGG	1 cut(s)	735
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	2 cut(s)	149, 715
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HincII	GTYRAC	1 cut(s)	780
HindII	GTYRAC	1 cut(s)	780
HinfI	GANTC	2 cut(s)	77, 563
HpaI	GTTAAC	1 cut(s)	780
HpaII	CCGG	1 cut(s)	735
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	780
Hpy188I	TCNGA	5 cut(s)	76, 450, 629, 725, 881
Hpy188III	TCNNGA	3 cut(s)	167, 512, 871
Hpy8I	GTNNAC	1 cut(s)	780
HpyAV	CCTTC	3 cut(s)	81, 222, 245
HpyCH4III	ACNGT	1 cut(s)	602
HpyCH4V	TGCA	9 cut(s)	83, 173, 281, 358, 364, 556, 704, 813, 848
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 364
HpyF3I	CTNAG	4 cut(s)	180, 581, 626, 795
Hsp92II	CATG	2 cut(s)	149, 715
HspAI	GCGC	1 cut(s)	417
KspAI	GTTAAC	1 cut(s)	780
Kzo9I	GATC	4 cut(s)	208, 525, 644, 766
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	2 cut(s)	293, 376
LweI	GCATC	3 cut(s)	160, 600, 697
MaeI	CTAG	4 cut(s)	269, 672, 728, 858
MaeIII	GTNAC	3 cut(s)	374, 457, 543
MalI	GATC	4 cut(s)	210, 527, 646, 768
MboI	GATC	4 cut(s)	208, 525, 644, 766
MboII	GAAGA	3 cut(s)	59, 477, 535
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	682
MluCI	AATT	3 cut(s)	480, 806, 875
MluNI	TGGCCA	1 cut(s)	682
Mox20I	TGGCCA	1 cut(s)	682
MscI	TGGCCA	1 cut(s)	682
MseI	TTAA	4 cut(s)	369, 587, 779, 804
Msp20I	TGGCCA	1 cut(s)	682
MspCI	CTTAAG	1 cut(s)	586
MspI	CCGG	1 cut(s)	735
MspR9I	CCNGG	1 cut(s)	735
Mva1269I	GAATGC	1 cut(s)	796
MvnI	CGCG	1 cut(s)	872
MwoI	GCNNNNNNNGC	2 cut(s)	278, 364
NciI	CCSGG	1 cut(s)	735
NdeII	GATC	4 cut(s)	208, 525, 644, 766
NlaIII	CATG	2 cut(s)	149, 715
NlaIV	GGNNCC	2 cut(s)	221, 733
NmuCI	GTSAC	1 cut(s)	374
NruI	TCGCGA	1 cut(s)	872
NspI	RCATGY	1 cut(s)	149
PciI	ACATGT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	77, 563
PkrI	GCNGC	2 cut(s)	283, 366
PscI	ACATGT	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	221, 733
PspPI	GGNCC	1 cut(s)	731
PstNI	CAGNNNCTG	2 cut(s)	80, 179
RruI	TCGCGA	1 cut(s)	872
RsaI	GTAC	2 cut(s)	242, 335
RsaNI	GTAC	2 cut(s)	241, 334
SaqAI	TTAA	4 cut(s)	369, 587, 779, 804
SatI	GCNGC	2 cut(s)	282, 365
Sau3AI	GATC	4 cut(s)	208, 525, 644, 766
Sau96I	GGNCC	1 cut(s)	731
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	3 cut(s)	160, 600, 697
SfcI	CTRYAG	2 cut(s)	153, 312
SmlI	CTYRAG	2 cut(s)	214, 586
SmoI	CTYRAG	2 cut(s)	214, 586
Sse9I	AATT	3 cut(s)	480, 806, 875
SspMI	CTAG	4 cut(s)	269, 672, 728, 858
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	2 cut(s)	341, 671
TaaI	ACNGT	1 cut(s)	602
TaqI	TCGA	4 cut(s)	497, 561, 643, 658
TasI	AATT	3 cut(s)	480, 806, 875
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	77, 563
Tru1I	TTAA	4 cut(s)	369, 587, 779, 804
Tru9I	TTAA	4 cut(s)	369, 587, 779, 804
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	2 cut(s)	281, 364
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	2 cut(s)	174, 641
Vha464I	CTTAAG	1 cut(s)	586
XapI	RAATTY	1 cut(s)	875
XceI	RCATGY	1 cut(s)	149
XmaJI	CCTAGG	1 cut(s)	671
XspI	CTAG	4 cut(s)	269, 672, 728, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.