Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Forward (+)

24469805 .. 24475574

Gene Structure 5770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G249000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGAACTATTTTGCACCACCAAAGGCGACTTGTCCATTTCAGATTACCGGGACAAAATCAACTCCATTGCAGATAATCTTGCACTCGCTGGAAACTGACAATCTCAGCTCCACATCCACACTGGCTCCGGGAAATTATAAGAAACTAATGGAGGAGGAAAAGCTTGATCAGATCAGCAGCTTACCATTTGAATTAAAACAGAGAATTATATCCTTCCTGCCATTGAAAGAGGCAGTAAGAGCTAGTGTCCTTTCAACTCATTGGAAGAGCCTCTGGTCTCCAATTCAAGTAAGCTTGAATTTTGATCCAAACCCAGTAAACCATGAAGGCTCAGGTCAAGAATTCAACCAAGTTATGGGAATGTGCATGAGGTCCTATGCTTGTCTTGAGCAATGGAAGCTGTGCCTCAATGTTGTTGACAGCAATGAAGCACTGATTCTCAAAGCCACCAAGGGGGTTGACAGAGAGCTTCATCTAGAATTTTTTGAAACAAAGAAAGTTTCAAGAGATTTCAAATCAGAGCCAACATCAACAAGTGCTTGTTTGTGCCTTCACAGCCATCATCCTACACAAACAGAGAGTTTTGCTGGCGTGAAGCTTCTCCAGCTCAGATCAGTCACCAACCTCACCAAAACCCTGGTGTCTGAAGTTTTCTCCAATTGCCATGTTCTTGAAAGCTTGAAGCTTGAGAAATGCAGGGGACTGGAAAGCCTTGATGTGAAAACAGATAGCCTGAGGAGCTTGGTGGTGGCAGACTGTTCAAACATGGCTGCCATTACAATTTCTGCACAAAATCTCAAATCATTTTGGTTCCATGGTGCTCTTCCCCAGATTATCACCCTAAAAAACACAAGAAGCTTGGTTGATGTGGTGCTCAATTTGAAGGATGGACCAATCAACAATGAGTTTGACTGTGAGGAAATTCTCTCCATCCTTTTCTCTTTCAAGGATGTTGAGGCTTTCACTATAAGTGGCTGGCTTCTTGAGTGGCTGTGTTCAGCAGGAGTTATTTTTGGGAGGCTTGATTTCCAATTCGACAAGTTAAAAGCATTAACTTGGATCGACTCTTTGATCAACAAGGACAAAAGAGACTCCCTTGCTTGCTTCTTAAATGCATGTCCTTTGCTGGAGAAATTGTTGGTTGAGATTGACAGCAACCTGAGCACCATCCCCTGCCCATTGTTCTACCAATACTGGCATGAGCCTCACCTTTGGATGGACTTTACAAGTGTCAAGTCGAACACTTCACAGCTCGAGCACCTTAAAAGCATTGAGTTGCTGGGCTTCGCTGGCAGAGACCATGAATTGCAACTAATGGATCTTTTGCTTGAAAAGGCAATTAGGGTCAACTCATTGACTTTAACTTGCCCTGAATTTTTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

462

Amino Acids

52.1

Weight (kDa)

5.76

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	355
AclWI	GGATC	3 cut(s)	299, 1067, 1326
AcsI	RAATTY	5 cut(s)	298, 341, 479, 921, 1373
AcuI	CTGAAG	1 cut(s)	666
AfiI	CCNNNNNNNGG	3 cut(s)	355, 453, 1216
AjnI	CCWGG	1 cut(s)	636
Alw21I	GWGCWC	4 cut(s)	823, 876, 1166, 1260
Alw26I	GTCTC	3 cut(s)	282, 1083, 1290
AlwI	GGATC	3 cut(s)	299, 1067, 1326
Ama87I	CYCGRG	1 cut(s)	1253
ApeKI	GCWGC	2 cut(s)	177, 770
ApoI	RAATTY	5 cut(s)	298, 341, 479, 921, 1373
AspS9I	GGNCC	2 cut(s)	372, 890
AsuC2I	CCSGG	2 cut(s)	49, 129
AsuHPI	GGTGA	4 cut(s)	610, 619, 829, 1199
AvaI	CYCGRG	1 cut(s)	1253
AvaII	GGWCC	2 cut(s)	372, 890
AxyI	CCTNAGG	1 cut(s)	734
Bbv12I	GWGCWC	4 cut(s)	823, 876, 1166, 1260
BbvI	GCAGC	2 cut(s)	189, 757
BccI	CCATC	5 cut(s)	567, 881, 938, 1175, 1210
BciT130I	CCWGG	1 cut(s)	638
BclI	TGATCA	2 cut(s)	166, 1071
BcnI	CCSGG	2 cut(s)	49, 129
BcoDI	GTCTC	3 cut(s)	282, 1083, 1290
BfaI	CTAG	2 cut(s)	243, 476
BisI	GCNGC	2 cut(s)	178, 771
BlsI	GCNGC	2 cut(s)	179, 772
Bme1390I	CCNGG	3 cut(s)	49, 129, 638
Bme18I	GGWCC	2 cut(s)	372, 890
BmeT110I	CYCGRG	1 cut(s)	1253
BmgT120I	GGNCC	2 cut(s)	372, 890
BmiI	GGNNCC	2 cut(s)	126, 812
BmrFI	CCNGG	3 cut(s)	49, 129, 638
BmrI	ACTGGG	1 cut(s)	308
BmuI	ACTGGG	1 cut(s)	308
BpmI	CTGGAG	2 cut(s)	587, 1148
Bpu10I	CCTNAGC	2 cut(s)	331, 1160
BpuEI	CTTGAG	3 cut(s)	407, 707, 1004
BpuMI	CCSGG	2 cut(s)	49, 129
BsaI	GGTCTC	2 cut(s)	282, 1290
BsaJI	CCNNGG	3 cut(s)	450, 636, 814
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 1121, 1151
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 453, 1216
Bse1I	ACTGG	4 cut(s)	126, 314, 708, 1199
Bse21I	CCTNAGG	1 cut(s)	734
Bse3DI	GCAATG	3 cut(s)	65, 398, 430
BseBI	CCWGG	1 cut(s)	638
BseDI	CCNNGG	3 cut(s)	450, 636, 814
BseGI	GGATG	7 cut(s)	113, 562, 892, 930, 955, 1167, 1221
BseLI	CCNNNNNNNGG	3 cut(s)	355, 453, 1216
BseMI	GCAATG	3 cut(s)	65, 398, 430
BseMII	CTCAG	5 cut(s)	118, 345, 622, 725, 1151
BseNI	ACTGG	4 cut(s)	126, 314, 708, 1199
BseRI	GAGGAG	2 cut(s)	167, 751
BseXI	GCAGC	2 cut(s)	189, 757
BseYI	CCCAGC	1 cut(s)	1279
BsgI	GTGCAG	1 cut(s)	771
BsiHKAI	GWGCWC	4 cut(s)	823, 876, 1166, 1260
BsiHKCI	CYCGRG	1 cut(s)	1253
BsiSI	CCGG	2 cut(s)	48, 128
BslFI	GGGAC	2 cut(s)	64, 714
BslI	CCNNNNNNNGG	3 cut(s)	355, 453, 1216
BsmAI	GTCTC	3 cut(s)	282, 1083, 1290
BsmFI	GGGAC	2 cut(s)	64, 714
Bso31I	GGTCTC	2 cut(s)	282, 1290
BsoBI	CYCGRG	1 cut(s)	1253
Bsp1286I	GDGCHC	4 cut(s)	823, 876, 1166, 1260
Bsp143I	GATC	7 cut(s)	166, 171, 304, 611, 1059, 1071, 1318
Bsp19I	CCATGG	1 cut(s)	814
BspCNI	CTCAG	5 cut(s)	117, 344, 621, 726, 1152
BspLI	GGNNCC	2 cut(s)	126, 812
BspPI	GGATC	3 cut(s)	299, 1067, 1326
BspQI	GCTCTTC	2 cut(s)	260, 828
BspTNI	GGTCTC	2 cut(s)	282, 1290
BsrDI	GCAATG	3 cut(s)	65, 398, 430
BsrI	ACTGG	4 cut(s)	126, 314, 708, 1199
BssECI	CCNNGG	3 cut(s)	450, 636, 814
BssMI	GATC	7 cut(s)	166, 171, 304, 611, 1059, 1071, 1318
BssT1I	CCWWGG	2 cut(s)	450, 814
Bst2UI	CCWGG	1 cut(s)	638
Bst4CI	ACNGT	2 cut(s)	758, 914
Bst6I	CTCTTC	2 cut(s)	260, 828
BstC8I	GCNNGC	4 cut(s)	589, 977, 1102, 1291
BstDEI	CTNAG	5 cut(s)	104, 331, 608, 734, 1160
BstDSI	CCRYGG	1 cut(s)	814
BstF5I	GGATG	7 cut(s)	113, 562, 892, 930, 955, 1167, 1221
BstKTI	GATC	7 cut(s)	169, 174, 307, 614, 1062, 1074, 1321
BstMAI	GTCTC	3 cut(s)	282, 1083, 1290
BstMBI	GATC	7 cut(s)	166, 171, 304, 611, 1059, 1071, 1318
BstMWI	GCNNNNNNNGC	7 cut(s)	239, 397, 555, 604, 738, 1161, 1290
BstNI	CCWGG	1 cut(s)	638
BstNSI	RCATGY	1 cut(s)	1119
BstSCI	CCNGG	3 cut(s)	47, 127, 636
BstV1I	GCAGC	2 cut(s)	189, 757
BstX2I	RGATCY	1 cut(s)	1318
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	1318
Bsu36I	CCTNAGG	1 cut(s)	734
BtgI	CCRYGG	1 cut(s)	814
BtsCI	GGATG	7 cut(s)	113, 562, 892, 930, 955, 1167, 1221
BtsIMutI	CAGTG	2 cut(s)	119, 431
Cac8I	GCNNGC	4 cut(s)	589, 977, 1102, 1291
Cfr13I	GGNCC	2 cut(s)	372, 890
CviAII	CATG	8 cut(s)	323, 367, 665, 766, 815, 1116, 1199, 1301
DdeI	CTNAG	5 cut(s)	104, 331, 608, 734, 1160
DpnI	GATC	7 cut(s)	168, 173, 306, 613, 1061, 1073, 1320
DpnII	GATC	7 cut(s)	166, 171, 304, 611, 1059, 1071, 1318
Eam1104I	CTCTTC	2 cut(s)	260, 828
EarI	CTCTTC	2 cut(s)	260, 828
Eco130I	CCWWGG	2 cut(s)	450, 814
Eco31I	GGTCTC	2 cut(s)	282, 1290
Eco47I	GGWCC	2 cut(s)	372, 890
Eco57I	CTGAAG	1 cut(s)	666
Eco81I	CCTNAGG	1 cut(s)	734
Eco88I	CYCGRG	1 cut(s)	1253
EcoO109I	RGGNCCY	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	636
EcoT14I	CCWWGG	2 cut(s)	450, 814
EcoT22I	ATGCAT	1 cut(s)	1117
ErhI	CCWWGG	2 cut(s)	450, 814
FaeI	CATG	8 cut(s)	326, 370, 668, 769, 818, 1119, 1202, 1304
FaqI	GGGAC	2 cut(s)	64, 714
FatI	CATG	8 cut(s)	322, 366, 664, 765, 814, 1115, 1198, 1300
FbaI	TGATCA	2 cut(s)	166, 1071
Fnu4HI	GCNGC	2 cut(s)	178, 771
FokI	GGATG	7 cut(s)	100, 549, 899, 917, 962, 1154, 1228
Fsp4HI	GCNGC	2 cut(s)	178, 771
FspBI	CTAG	2 cut(s)	243, 476
GluI	GCNGC	2 cut(s)	178, 771
GsaI	CCCAGC	1 cut(s)	1283
GsuI	CTGGAG	2 cut(s)	587, 1148
HapII	CCGG	2 cut(s)	48, 128
Hin1II	CATG	8 cut(s)	326, 370, 668, 769, 818, 1119, 1202, 1304
HincII	GTYRAC	3 cut(s)	418, 460, 1348
HindII	GTYRAC	3 cut(s)	418, 460, 1348
HindIII	AAGCTT	6 cut(s)	161, 292, 596, 676, 683, 856
HinfI	GANTC	3 cut(s)	436, 1064, 1091
HpaII	CCGG	2 cut(s)	48, 128
HphI	GGTGA	4 cut(s)	610, 619, 829, 1199
Hpy166II	GTNNAC	4 cut(s)	319, 418, 460, 1348
Hpy188I	TCNGA	5 cut(s)	42, 171, 520, 611, 646
Hpy188III	TCNNGA	6 cut(s)	338, 386, 476, 504, 671, 983
Hpy8I	GTNNAC	4 cut(s)	319, 418, 460, 1348
HpyAV	CCTTC	4 cut(s)	223, 320, 560, 877
HpyCH4III	ACNGT	2 cut(s)	758, 914
HpyCH4V	TGCA	8 cut(s)	14, 70, 82, 366, 696, 788, 1115, 1309
HpyF10VI	GCNNNNNNNGC	7 cut(s)	239, 397, 555, 604, 738, 1161, 1290
HpyF3I	CTNAG	5 cut(s)	104, 331, 608, 734, 1160
Hsp92II	CATG	8 cut(s)	326, 370, 668, 769, 818, 1119, 1202, 1304
Ksp22I	TGATCA	2 cut(s)	166, 1071
Kzo9I	GATC	7 cut(s)	166, 171, 304, 611, 1059, 1071, 1318
LguI	GCTCTTC	2 cut(s)	260, 828
LmnI	GCTCC	3 cut(s)	113, 130, 738
Lsp1109I	GCAGC	2 cut(s)	189, 757
MaeI	CTAG	2 cut(s)	243, 476
MaeIII	GTNAC	1 cut(s)	616
MalI	GATC	7 cut(s)	168, 173, 306, 613, 1061, 1073, 1320
MboI	GATC	7 cut(s)	166, 171, 304, 611, 1059, 1071, 1318
MboII	GAAGA	2 cut(s)	277, 815
MfeI	CAATTG	1 cut(s)	658
MflI	RGATCY	1 cut(s)	1318
MhlI	GDGCHC	4 cut(s)	823, 876, 1166, 1260
MlyI	GAGTC	2 cut(s)	1058, 1085
Mph1103I	ATGCAT	1 cut(s)	1117
MseI	TTAA	6 cut(s)	194, 1043, 1052, 1109, 1263, 1361
MspI	CCGG	2 cut(s)	48, 128
MspR9I	CCNGG	3 cut(s)	49, 129, 638
MunI	CAATTG	1 cut(s)	658
MvaI	CCWGG	1 cut(s)	638
MwoI	GCNNNNNNNGC	7 cut(s)	239, 397, 555, 604, 738, 1161, 1290
NciI	CCSGG	2 cut(s)	49, 129
NcoI	CCATGG	1 cut(s)	814
NdeII	GATC	7 cut(s)	166, 171, 304, 611, 1059, 1071, 1318
NlaIII	CATG	8 cut(s)	326, 370, 668, 769, 818, 1119, 1202, 1304
NlaIV	GGNNCC	2 cut(s)	126, 812
NmuCI	GTSAC	1 cut(s)	616
NsiI	ATGCAT	1 cut(s)	1117
NspI	RCATGY	1 cut(s)	1119
PaeR7I	CTCGAG	1 cut(s)	1253
PciSI	GCTCTTC	2 cut(s)	260, 828
PfeI	GAWTC	1 cut(s)	436
PflMI	CCANNNNNTGG	1 cut(s)	355
PfoI	TCCNGGA	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	179, 772
PleI	GAGTC	2 cut(s)	1058, 1085
PpsI	GAGTC	2 cut(s)	1058, 1085
PpuMI	RGGWCCY	1 cut(s)	372
PsiI	TTATAA	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	636
PspFI	CCCAGC	1 cut(s)	1279
PspGI	CCWGG	1 cut(s)	636
PspN4I	GGNNCC	2 cut(s)	126, 812
PspPI	GGNCC	2 cut(s)	372, 890
PspPPI	RGGWCCY	1 cut(s)	372
PspXI	VCTCGAGB	1 cut(s)	1253
PsuI	RGATCY	1 cut(s)	1318
SapI	GCTCTTC	2 cut(s)	260, 828
SaqAI	TTAA	6 cut(s)	194, 1043, 1052, 1109, 1263, 1361
SatI	GCNGC	2 cut(s)	178, 771
Sau3AI	GATC	7 cut(s)	166, 171, 304, 611, 1059, 1071, 1318
Sau96I	GGNCC	2 cut(s)	372, 890
SchI	GAGTC	2 cut(s)	1058, 1085
ScrFI	CCNGG	3 cut(s)	49, 129, 638
SduI	GDGCHC	4 cut(s)	823, 876, 1166, 1260
Sfr274I	CTCGAG	1 cut(s)	1253
SinI	GGWCC	2 cut(s)	372, 890
SlaI	CTCGAG	1 cut(s)	1253
SmlI	CTYRAG	4 cut(s)	386, 686, 983, 1253
SmoI	CTYRAG	4 cut(s)	386, 686, 983, 1253
SspMI	CTAG	2 cut(s)	243, 476
StyD4I	CCNGG	3 cut(s)	47, 127, 636
StyI	CCWWGG	2 cut(s)	450, 814
TaaI	ACNGT	2 cut(s)	758, 914
TaqI	TCGA	4 cut(s)	1035, 1062, 1238, 1254
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	6 cut(s)	194, 1043, 1052, 1109, 1263, 1361
Tru9I	TTAA	6 cut(s)	194, 1043, 1052, 1109, 1263, 1361
TscAI	CASTG	2 cut(s)	126, 438
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	2 cut(s)	177, 770
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	5 cut(s)	17, 339, 441, 461, 1317
TspRI	CASTG	2 cut(s)	126, 438
Van91I	CCANNNNNTGG	1 cut(s)	355
VpaK11BI	GGWCC	2 cut(s)	372, 890
XapI	RAATTY	5 cut(s)	298, 341, 479, 921, 1373
XbaI	TCTAGA	1 cut(s)	475
XceI	RCATGY	1 cut(s)	1119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	1253
XspI	CTAG	2 cut(s)	243, 476
Zsp2I	ATGCAT	1 cut(s)	1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.