Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Reverse (-)

6884215 .. 6885619

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0088300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCCGGCCTGTGGGAGCCGCGTCCGAACCCAACTCTCAGCAGAACCACTTCATCGAGTAGTACTAGTAGCTTTGGTGGGTTCTTCATGGATCATCAGAGCAATACTCACGGCGCTTATAACTACGTGATGATGGAGAAGATGGAGAAGAGGCAGCTTTTTCTTAGAAGCTACCAGTTCTGCAGGAAGAAGAGTCTGGCCGAGAAGATTAAAGGGTCTTTGGTTAAAGTGAAGAGGGTCATATGCTTGAGGCTGCGTAATGCTAAAAAGCTTAGGAAATCGGTTTGCTTCAGATTCCGGTATGGATTTTCTTTCCGGAGAAGAAGAATATGCCGACTGTTGAATTACTACCGCCATAACAGGAAATGCGATAACTCGTATTGCTTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

130

Amino Acids

15.69

Weight (kDa)

10.75

Isoelectric Point (pI)

57.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
AccII	CGCG	1 cut(s)	22
AccIII	TCCGGA	1 cut(s)	315
AciI	CCGC	2 cut(s)	20, 352
AclWI	GGATC	1 cut(s)	99
AcoI	YGGCCR	2 cut(s)	3, 198
AcuI	CTGAAG	1 cut(s)	274
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	343
AhlI	ACTAGT	1 cut(s)	65
AluBI	AGCT	4 cut(s)	72, 157, 171, 271
AluI	AGCT	4 cut(s)	72, 157, 171, 271
AlwI	GGATC	1 cut(s)	99
Aor13HI	TCCGGA	1 cut(s)	315
AoxI	GGCC	3 cut(s)	3, 7, 198
ApeKI	GCWGC	2 cut(s)	154, 253
Asp700I	GAANNNNTTC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	166, 240
BccI	CCATC	2 cut(s)	127, 136
BceAI	ACGGC	1 cut(s)	127
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	181
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	3 cut(s)	20, 155, 254
BlsI	GCNGC	3 cut(s)	21, 156, 255
BmcAI	AGTACT	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
Bpu10I	CCTNAGC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	268
BsaAI	YACGTR	1 cut(s)	127
BsaWI	WCCGGW	2 cut(s)	297, 315
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	175
BseAI	TCCGGA	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	175
BseXI	GCAGC	2 cut(s)	166, 240
Bsh1236I	CGCG	1 cut(s)	22
BshFI	GGCC	3 cut(s)	5, 9, 200
BsiSI	CCGG	3 cut(s)	6, 298, 316
BslI	CCNNNNNNNGG	1 cut(s)	12
BsnI	GGCC	3 cut(s)	5, 9, 200
Bsp13I	TCCGGA	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	2 cut(s)	20, 352
BspANI	GGCC	3 cut(s)	5, 9, 200
BspCNI	CTCAG	1 cut(s)	51
BspEI	TCCGGA	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	185
BspPI	GGATC	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	339
Bst6I	CTCTTC	3 cut(s)	143, 185, 227
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	38, 164, 272
BstFNI	CGCG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	166, 240
BsuRI	GGCC	3 cut(s)	5, 9, 200
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	5
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	9 cut(s)	5, 9, 19, 72, 157, 171, 200, 253, 271
CviKI_1	RGCY	9 cut(s)	5, 9, 19, 72, 157, 171, 200, 253, 271
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	3 cut(s)	38, 164, 272
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EaeI	YGGCCR	2 cut(s)	3, 198
Eam1104I	CTCTTC	3 cut(s)	143, 185, 227
EarI	CTCTTC	3 cut(s)	143, 185, 227
Eco57I	CTGAAG	1 cut(s)	274
FaeI	CATG	1 cut(s)	91
FaiI	YATR	7 cut(s)	89, 120, 242, 244, 303, 331, 357
FatI	CATG	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	242
Fnu4HI	GCNGC	3 cut(s)	20, 155, 254
FseI	GGCCGGCC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	20, 155, 254
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	3 cut(s)	20, 155, 254
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	3 cut(s)	5, 9, 200
HapII	CCGG	3 cut(s)	6, 298, 316
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	193, 294
HpaII	CCGG	3 cut(s)	6, 298, 316
Hpy188I	TCNGA	3 cut(s)	27, 99, 293
Hpy188III	TCNNGA	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	183
HpyF3I	CTNAG	3 cut(s)	38, 164, 272
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	114
Kpn2I	TCCGGA	1 cut(s)	315
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	9 cut(s)	19, 23, 169, 182, 188, 311, 329, 346, 373
Lsp1109I	GCAGC	2 cut(s)	166, 240
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	126
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	9 cut(s)	76, 151, 160, 199, 202, 217, 244, 333, 336
MluCI	AATT	1 cut(s)	343
MlyI	GAGTC	1 cut(s)	202
MnlI	CCTC	3 cut(s)	144, 228, 243
MroI	TCCGGA	1 cut(s)	315
MroNI	GCCGGC	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	2 cut(s)	210, 225
MspI	CCGG	3 cut(s)	6, 298, 316
MvnI	CGCG	1 cut(s)	22
NaeI	GCCGGC	1 cut(s)	7
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	1 cut(s)	91
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	226
PdiI	GCCGGC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	21, 156, 255
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
Ppu21I	YACGTR	1 cut(s)	127
PsiI	TTATAA	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	18
PstI	CTGCAG	1 cut(s)	185
RigI	GGCCGGCC	1 cut(s)	9
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	210, 225
SatI	GCNGC	3 cut(s)	20, 155, 254
Sau3AI	GATC	1 cut(s)	91
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	1 cut(s)	202
SetI	ASST	5 cut(s)	74, 129, 159, 173, 273
SfcI	CTRYAG	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	2 cut(s)	20, 352
SspMI	CTAG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	339
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	56
TasI	AATT	1 cut(s)	343
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	2 cut(s)	210, 225
Tru9I	TTAA	2 cut(s)	210, 225
TseI	GCWGC	2 cut(s)	154, 253
TspDTI	ATGAA	2 cut(s)	42, 76
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.