Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Reverse (-)

8917244 .. 8919141

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGAGGAGGGAAAGATGGATGATTTGATCAGTAGCTTACCCTTTGAAATACAGAAAAGAGTTGCTTCCTTGCTGCCATTGAAGGAAGCAGTAAGAACAACCAGTCTTTCTACATTTTGGAGAAGCCTCTGGTCTCCGATTCAGCTAAGCTTGGATTTTGATCCAAACCCACTAAACCATGAAGAGGCTGGTCAAGATATCGAACAGGTTATGGGCATGTTCTTGAGGTCTTTTGCTTGTCCGGAGAAATTGGAGCTCAATCTCAAAGTACCTATTAACAATAGAAATGAAGAATTGGTTGTCAAAGCTACCAAGGGGGTTAAGCAAGAGCTTCATGTTGAGTTCTCTGAAACCCAGAATGTTCCAGCAAAAACTTGTTTGTGCCTTCACAGCACTCCTACCCAAAGAGCTAGTTTCTTTGGGGTCAAGCTTCTTCACCTCAGATCAGTCACCAATCTTTCCAAGCCTTTGGTTTCTATGATGTTTTCAAATTGTAATGTTCTTGAAAGTTTGAGTCTTGAGAAATGTAGAGGGTTGGAGAGCCTTGAAGTAGAGACCTTGAGTCTTCAGAGCTTGGTGGTGGAAGACTGTTCAAACATGGCTGCTATTATGGTTTCTGCTCCAAATCTAATATCTTTCGAGTATCATGGTGCTCTTCTTCAGATTGAGATAAAGAAAACAGTGACCCTGGTTGATGTTGTGCTCGATTTGAGAGACGGACCAGGAAGAAATGAGTTTGATTGTGAGGATGTCTTGCCCATCCTAGCTTCTTTCAAGGATGTTGAGGTTCTCACCATAAGTGGCTGGCTTCTTGAGTGGTTGTGTTCGGCGGGAGTGATTTTTGGAAAGCTTGAGTTCAATTTCAACAGACTGAAGGAGTTAAGTTGCATTGATTTTGTTATCAGCAAGGACAAAAGGGATTCTCTTGCCTGCTTCCTAAACTCATGTCCTTCCTTAGTGAAGTTGTCCGTCGAGATTGAGAGCAAGCTGAACATCATCCCATGTCCGTGCTTCCATCAATACTGGCATGAACCTCACCTCTGGATGGACTTCACGACCGTAAGGTCGAATACTTCGAATCTTGAGCAGCTCGAAAGTGTCAATCTGGTTGGCTTCGTCGGCAAAGAAGACGAATTGCTTCTAATGGATCTCTTTCTTGAAAAGGCAACGAGGCTCAACTCGTTGATTCTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

399

Amino Acids

44.94

Weight (kDa)

5.0

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	114 - 219	9.1e-08	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	141 - 397	6.5e-14	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1063
AccIII	TCCGGA	1 cut(s)	241
AciI	CCGC	1 cut(s)	830
AclWI	GGATC	2 cut(s)	155, 1155
AcuI	CTGAAG	3 cut(s)	551, 644, 893
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	184, 1045
AhdI	GACNNNNNGTC	1 cut(s)	561
AjnI	CCWGG	2 cut(s)	687, 721
Alw21I	GWGCWC	3 cut(s)	258, 655, 705
Alw26I	GTCTC	3 cut(s)	138, 548, 708
AlwI	GGATC	2 cut(s)	155, 1155
Aor13HI	TCCGGA	1 cut(s)	241
ApeKI	GCWGC	3 cut(s)	73, 602, 1087
Asp700I	GAANNNNTTC	1 cut(s)	1137
AspS9I	GGNCC	1 cut(s)	719
AsuHPI	GGTGA	4 cut(s)	428, 442, 784, 1028
AsuII	TTCGAA	1 cut(s)	1076
AvaII	GGWCC	1 cut(s)	719
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	3 cut(s)	557, 591, 1134
Bbv12I	GWGCWC	3 cut(s)	258, 655, 705
BbvI	GCAGC	3 cut(s)	60, 589, 1099
BccI	CCATC	4 cut(s)	10, 767, 1023, 1039
BciT130I	CCWGG	2 cut(s)	689, 723
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	3 cut(s)	138, 548, 708
BfaI	CTAG	2 cut(s)	411, 764
BisI	GCNGC	3 cut(s)	74, 603, 1088
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	3 cut(s)	75, 604, 1089
Bme1390I	CCNGG	2 cut(s)	689, 723
Bme18I	GGWCC	1 cut(s)	719
BmeRI	GACNNNNNGTC	1 cut(s)	561
BmgT120I	GGNCC	1 cut(s)	719
BmrFI	CCNGG	2 cut(s)	689, 723
BpiI	GAAGAC	3 cut(s)	557, 591, 1134
Bpu1102I	GCTNAGC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	1076
BpuEI	CTTGAG	6 cut(s)	244, 539, 580, 833, 872, 1103
BsaBI	GATNNNNATC	1 cut(s)	159
BsaI	GGTCTC	2 cut(s)	138, 548
BsaJI	CCNNGG	2 cut(s)	312, 687
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 1045
Bse1I	ACTGG	2 cut(s)	102, 1028
Bse8I	GATNNNNATC	1 cut(s)	159
BseAI	TCCGGA	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	689, 723
BseDI	CCNNGG	2 cut(s)	312, 687
BseGI	GGATG	6 cut(s)	25, 754, 759, 784, 996, 1050
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	184, 1045
BseMII	CTCAG	1 cut(s)	454
BseNI	ACTGG	2 cut(s)	102, 1028
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	60, 589, 1099
Bsh1285I	CGRYCG	1 cut(s)	1059
BsiEI	CGRYCG	1 cut(s)	1059
BsiHKAI	GWGCWC	3 cut(s)	258, 655, 705
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	184, 1045
BsmAI	GTCTC	3 cut(s)	138, 548, 708
BsmBI	CGTCTC	1 cut(s)	708
Bso31I	GGTCTC	2 cut(s)	138, 548
Bsp119I	TTCGAA	1 cut(s)	1076
Bsp1286I	GDGCHC	3 cut(s)	258, 655, 705
Bsp13I	TCCGGA	1 cut(s)	241
Bsp143I	GATC	4 cut(s)	27, 160, 443, 1147
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	1 cut(s)	830
BspCNI	CTCAG	1 cut(s)	453
BspEI	TCCGGA	1 cut(s)	241
BspPI	GGATC	2 cut(s)	155, 1155
BspQI	GCTCTTC	1 cut(s)	660
BspT104I	TTCGAA	1 cut(s)	1076
BspTNI	GGTCTC	2 cut(s)	138, 548
BsrI	ACTGG	2 cut(s)	102, 1028
BssECI	CCNNGG	2 cut(s)	312, 687
BssMI	GATC	4 cut(s)	27, 160, 443, 1147
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	689, 723
Bst4CI	ACNGT	3 cut(s)	590, 682, 1060
Bst6I	CTCTTC	2 cut(s)	177, 660
BstBI	TTCGAA	1 cut(s)	1076
BstC8I	GCNNGC	3 cut(s)	806, 931, 986
BstDEI	CTNAG	3 cut(s)	146, 440, 955
BstF5I	GGATG	6 cut(s)	25, 754, 759, 784, 996, 1050
BstKTI	GATC	4 cut(s)	30, 163, 446, 1150
BstMAI	GTCTC	3 cut(s)	138, 548, 708
BstMBI	GATC	4 cut(s)	27, 160, 443, 1147
BstMCI	CGRYCG	1 cut(s)	1059
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 1119
BstNI	CCWGG	2 cut(s)	689, 723
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	2 cut(s)	687, 721
BstV1I	GCAGC	3 cut(s)	60, 589, 1099
BstV2I	GAAGAC	3 cut(s)	557, 591, 1134
BstX2I	RGATCY	1 cut(s)	1147
BstXI	CCANNNNNNTGG	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	1147
BtsCI	GGATG	6 cut(s)	25, 754, 759, 784, 996, 1050
BtsIMutI	CAGTG	1 cut(s)	687
Cac8I	GCNNGC	3 cut(s)	806, 931, 986
Cfr13I	GGNCC	1 cut(s)	719
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	8 cut(s)	179, 217, 335, 598, 647, 945, 1002, 1028
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	3 cut(s)	146, 440, 955
DpnI	GATC	4 cut(s)	29, 162, 445, 1149
DpnII	GATC	4 cut(s)	27, 160, 443, 1147
DrdI	GACNNNNNNGTC	1 cut(s)	1063
DriI	GACNNNNNGTC	1 cut(s)	561
DseDI	GACNNNNNNGTC	1 cut(s)	1063
Eam1104I	CTCTTC	2 cut(s)	177, 660
Eam1105I	GACNNNNNGTC	1 cut(s)	561
EarI	CTCTTC	2 cut(s)	177, 660
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	2 cut(s)	138, 548
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	719
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	3 cut(s)	551, 644, 893
EcoICRI	GAGCTC	1 cut(s)	256
EcoRII	CCWGG	2 cut(s)	687, 721
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	312
Esp3I	CGTCTC	1 cut(s)	708
FaeI	CATG	8 cut(s)	182, 220, 338, 601, 650, 948, 1005, 1031
FalI	AAGNNNNNCTT	2 cut(s)	49, 81
FatI	CATG	8 cut(s)	178, 216, 334, 597, 646, 944, 1001, 1027
FauI	CCCGC	1 cut(s)	823
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	3 cut(s)	74, 603, 1088
FokI	GGATG	6 cut(s)	32, 746, 761, 791, 983, 1057
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	3 cut(s)	74, 603, 1088
FspBI	CTAG	2 cut(s)	411, 764
GluI	GCNGC	3 cut(s)	74, 603, 1088
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	8 cut(s)	182, 220, 338, 601, 650, 948, 1005, 1031
HindIII	AAGCTT	3 cut(s)	148, 428, 848
HinfI	GANTC	6 cut(s)	139, 514, 562, 920, 1078, 1186
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	4 cut(s)	428, 442, 784, 1028
Hpy188I	TCNGA	5 cut(s)	138, 349, 443, 570, 663
Hpy99I	CGWCG	2 cut(s)	974, 1121
HpyAV	CCTTC	4 cut(s)	76, 395, 868, 960
HpyCH4III	ACNGT	3 cut(s)	590, 682, 1060
HpyCH4V	TGCA	1 cut(s)	888
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 1119
HpyF3I	CTNAG	3 cut(s)	146, 440, 955
Hsp92II	CATG	8 cut(s)	182, 220, 338, 601, 650, 948, 1005, 1031
Kpn2I	TCCGGA	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	27, 160, 443, 1147
LguI	GCTCTTC	1 cut(s)	660
LmnI	GCTCC	2 cut(s)	253, 625
Lsp1109I	GCAGC	3 cut(s)	60, 589, 1099
MaeI	CTAG	2 cut(s)	411, 764
MaeIII	GTNAC	2 cut(s)	448, 682
MalI	GATC	4 cut(s)	29, 162, 445, 1149
MboI	GATC	4 cut(s)	27, 160, 443, 1147
MboII	GAAGA	9 cut(s)	194, 302, 425, 557, 596, 647, 650, 738, 1139
MflI	RGATCY	1 cut(s)	1147
MhlI	GDGCHC	3 cut(s)	258, 655, 705
MluCI	AATT	5 cut(s)	248, 293, 490, 859, 1133
MlyI	GAGTC	2 cut(s)	523, 571
MmeI	TCCRAC	1 cut(s)	516
MroI	TCCGGA	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	1137
MseI	TTAA	3 cut(s)	276, 321, 881
MslI	CAYNNNNRTG	1 cut(s)	1006
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	2 cut(s)	689, 723
MvaI	CCWGG	2 cut(s)	689, 723
MwoI	GCNNNNNNNGC	2 cut(s)	390, 1119
NdeII	GATC	4 cut(s)	27, 160, 443, 1147
NlaIII	CATG	8 cut(s)	182, 220, 338, 601, 650, 948, 1005, 1031
NmuCI	GTSAC	2 cut(s)	448, 682
NspI	RCATGY	1 cut(s)	220
NspV	TTCGAA	1 cut(s)	1076
PciSI	GCTCTTC	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	1 cut(s)	1073
PdmI	GAANNNNTTC	1 cut(s)	1137
PfeI	GAWTC	4 cut(s)	139, 920, 1078, 1186
PkrI	GCNGC	3 cut(s)	75, 604, 1089
PleI	GAGTC	2 cut(s)	522, 570
PpsI	GAGTC	2 cut(s)	522, 570
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	687, 721
PspGI	CCWGG	2 cut(s)	687, 721
PspPI	GGNCC	1 cut(s)	719
PsuI	RGATCY	1 cut(s)	1147
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	1006
SacI	GAGCTC	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	276, 321, 881
SatI	GCNGC	3 cut(s)	74, 603, 1088
Sau3AI	GATC	4 cut(s)	27, 160, 443, 1147
Sau96I	GGNCC	1 cut(s)	719
SchI	GAGTC	2 cut(s)	523, 571
ScrFI	CCNGG	2 cut(s)	689, 723
SduI	GDGCHC	3 cut(s)	258, 655, 705
SfuI	TTCGAA	1 cut(s)	1076
SinI	GGWCC	1 cut(s)	719
SmiMI	CAYNNNNRTG	1 cut(s)	1006
SmlI	CTYRAG	6 cut(s)	223, 518, 559, 812, 851, 1082
SmoI	CTYRAG	6 cut(s)	223, 518, 559, 812, 851, 1082
Sse9I	AATT	5 cut(s)	248, 293, 490, 859, 1133
SsiI	CCGC	1 cut(s)	830
SspMI	CTAG	2 cut(s)	411, 764
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	687, 721
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	3 cut(s)	590, 682, 1060
TaqI	TCGA	7 cut(s)	201, 639, 705, 972, 1067, 1076, 1092
TasI	AATT	5 cut(s)	248, 293, 490, 859, 1133
TfiI	GAWTC	4 cut(s)	139, 920, 1078, 1186
Tru1I	TTAA	3 cut(s)	276, 321, 881
Tru9I	TTAA	3 cut(s)	276, 321, 881
TscAI	CASTG	1 cut(s)	687
TseFI	GTSAC	2 cut(s)	448, 682
TseI	GCWGC	3 cut(s)	73, 602, 1087
Tsp45I	GTSAC	2 cut(s)	448, 682
TspDTI	ATGAA	4 cut(s)	195, 303, 323, 1044
TspGWI	ACGGA	3 cut(s)	732, 958, 996
TspRI	CASTG	1 cut(s)	687
VpaK11BI	GGWCC	1 cut(s)	719
XceI	RCATGY	1 cut(s)	220
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	1137
XspI	CTAG	2 cut(s)	411, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.