Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Reverse (-)

11900437 .. 11903008

Gene Structure 2572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG136300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCAGGAGGGAAAGCTTGATGATTTGATCAGCAGCTTACCATTTGAAGTACAGAAAAGAGTTGTTTCCTTGCTGCCATTGAAGGAAGCAGTAAGAACAAGCACTCTTTCTACATTTTGGAGAAGCCTCTGGTTTCCAATTCAGCTAAGCTTGGATTTTGATCCAAACCCATTAACCAATGAAGGGTCTGGTCAAGAAATTGAACAGGTTATGGGCATGTTCTTGAGGTCTTATGCATGTCCAGAAAAATTGGAGCTCAATCTCAAAGTCCTTGGCCATATCAATAAAGAATTGGTTGTCAAAGCTACCAAAGGGGTTGAGCAAGAGCTTCATGTTGAGTTCTTTGAAACTCAGAATGTTGCAGCAAAAACCTGTTTGAGCCTTCATAGCAATCCAGCCCAAAAATCTAGTTTCTTCGGGGTCAAGCTTCTTCACCTCAGATCAGTCACCCATCTTTCCAAACCTTTGGTTTCTATGCTGCTTTCAAATTGTAATGTTCTTGAAAGCTTGAGGCTTGTTAAATGTAGAGAGTTGGAGAGCCTTGAAGTAGAGACAGAGAGTCTTCAGAGCTTGGTGGTGGAAGACTGTTCAGATATTTCTGCTATTGTGGTTTCTGCTCCAAATCTAATATCTTTTGAGTATCATGGTGCTCTTGCTCAGATTGAGATAAAGAATACAGTGAGCTTGGTTAATGTTGTGCTCGATTTGAGAGATGGACCAGGAAGCAATGAGTTTGATTGTGAGGATGTCTTGCCCATCCTAGCTTCTCTCAAGGATGTTGAGGTTCTCACCGTAAGTGGCTGGCTTCTTGAGGTATATATGTATAATTGTATATTATGTTTGATCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

283

Amino Acids

31.59

Weight (kDa)

4.88

Isoelectric Point (pI)

47.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 44	5.7e-06	F-box domain
LRR_At5g56370	PF24758	123 - 216	4.8e-08	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	141 - 234	4.2e-13	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	155, 838
AcoI	YGGCCR	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	548
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	7 cut(s)	47, 82, 203, 347, 486, 503, 545
AhdI	GACNNNNNGTC	1 cut(s)	558
AjnI	CCWGG	1 cut(s)	718
Alw21I	GWGCWC	3 cut(s)	258, 652, 702
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	155, 838
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	4 cut(s)	33, 73, 362, 478
AspS9I	GGNCC	1 cut(s)	716
AsuHPI	GGTGA	3 cut(s)	425, 439, 781
AvaII	GGWCC	1 cut(s)	716
BalI	TGGCCA	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	2 cut(s)	554, 588
Bbv12I	GWGCWC	3 cut(s)	258, 652, 702
BbvI	GCAGC	4 cut(s)	45, 60, 374, 465
BccI	CCATC	3 cut(s)	459, 707, 764
BciT130I	CCWGG	1 cut(s)	720
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	2 cut(s)	408, 761
BisI	GCNGC	4 cut(s)	34, 74, 363, 479
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	4 cut(s)	35, 75, 364, 480
Bme1390I	CCNGG	1 cut(s)	720
Bme18I	GGWCC	1 cut(s)	716
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmgT120I	GGNCC	1 cut(s)	716
BmrFI	CCNGG	1 cut(s)	720
BpiI	GAAGAC	2 cut(s)	554, 588
Bpu1102I	GCTNAGC	1 cut(s)	146
BpuEI	CTTGAG	4 cut(s)	244, 529, 755, 830
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	733
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	3 cut(s)	751, 756, 781
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	3 cut(s)	365, 451, 671
BseXI	GCAGC	4 cut(s)	45, 60, 374, 465
BshFI	GGCC	1 cut(s)	276
BsiHKAI	GWGCWC	3 cut(s)	258, 652, 702
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	545
BsnI	GGCC	1 cut(s)	276
Bsp1286I	GDGCHC	3 cut(s)	258, 652, 702
Bsp143I	GATC	4 cut(s)	27, 160, 440, 843
Bsp1720I	GCTNAGC	1 cut(s)	146
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	3 cut(s)	364, 450, 670
BspPI	GGATC	2 cut(s)	155, 838
BsrDI	GCAATG	1 cut(s)	733
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	4 cut(s)	27, 160, 440, 843
BssT1I	CCWWGG	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	3 cut(s)	587, 679, 793
BstC8I	GCNNGC	1 cut(s)	803
BstDEI	CTNAG	4 cut(s)	146, 351, 437, 657
BstF5I	GGATG	3 cut(s)	751, 756, 781
BstKTI	GATC	4 cut(s)	30, 163, 443, 846
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	4 cut(s)	27, 160, 440, 843
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	2 cut(s)	220, 240
BstSCI	CCNGG	1 cut(s)	718
BstV1I	GCAGC	4 cut(s)	45, 60, 374, 465
BstV2I	GAAGAC	2 cut(s)	554, 588
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	3 cut(s)	751, 756, 781
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	1 cut(s)	803
Cfr13I	GGNCC	1 cut(s)	716
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	4 cut(s)	217, 237, 332, 644
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	4 cut(s)	146, 351, 437, 657
DpnI	GATC	4 cut(s)	29, 162, 442, 845
DpnII	GATC	4 cut(s)	27, 160, 440, 843
DriI	GACNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	716
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	4 cut(s)	220, 240, 335, 647
FatI	CATG	4 cut(s)	216, 236, 331, 643
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	34, 74, 363, 479
FokI	GGATG	3 cut(s)	743, 758, 788
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	4 cut(s)	34, 74, 363, 479
FspBI	CTAG	2 cut(s)	408, 761
GluI	GCNGC	4 cut(s)	34, 74, 363, 479
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	220, 240, 335, 647
HindIII	AAGCTT	4 cut(s)	14, 148, 425, 505
HinfI	GANTC	1 cut(s)	559
HphI	GGTGA	3 cut(s)	425, 439, 781
Hpy188I	TCNGA	6 cut(s)	354, 440, 567, 592, 660, 851
Hpy188III	TCNNGA	5 cut(s)	194, 223, 242, 500, 809
HpyAV	CCTTC	3 cut(s)	76, 176, 392
HpyCH4III	ACNGT	3 cut(s)	587, 679, 793
HpyCH4V	TGCA	3 cut(s)	4, 236, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	4 cut(s)	146, 351, 437, 657
Hsp92II	CATG	4 cut(s)	220, 240, 335, 647
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	27, 160, 440, 843
LmnI	GCTCC	2 cut(s)	253, 622
LpnPI	CCDG	9 cut(s)	115, 174, 191, 255, 385, 408, 705, 732, 787
Lsp1109I	GCAGC	4 cut(s)	45, 60, 374, 465
MaeI	CTAG	2 cut(s)	408, 761
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	4 cut(s)	29, 162, 442, 845
MboI	GATC	4 cut(s)	27, 160, 440, 843
MboII	GAAGA	4 cut(s)	406, 422, 554, 593
MhlI	GDGCHC	3 cut(s)	258, 652, 702
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	6 cut(s)	138, 198, 248, 290, 487, 826
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	7 cut(s)	137, 219, 446, 504, 736, 775, 805
Mox20I	TGGCCA	1 cut(s)	276
Mph1103I	ATGCAT	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	3 cut(s)	173, 519, 690
Msp20I	TGGCCA	1 cut(s)	276
MspR9I	CCNGG	1 cut(s)	720
MvaI	CCWGG	1 cut(s)	720
MwoI	GCNNNNNNNGC	1 cut(s)	387
NdeII	GATC	4 cut(s)	27, 160, 440, 843
NlaIII	CATG	4 cut(s)	220, 240, 335, 647
NmuCI	GTSAC	1 cut(s)	445
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	2 cut(s)	220, 240
PkrI	GCNGC	4 cut(s)	35, 75, 364, 480
PleI	GAGTC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspPI	GGNCC	1 cut(s)	716
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	173, 519, 690
SatI	GCNGC	4 cut(s)	34, 74, 363, 479
Sau3AI	GATC	4 cut(s)	27, 160, 440, 843
Sau96I	GGNCC	1 cut(s)	716
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	720
SduI	GDGCHC	3 cut(s)	258, 652, 702
SinI	GGWCC	1 cut(s)	716
SmlI	CTYRAG	4 cut(s)	223, 508, 770, 809
SmoI	CTYRAG	4 cut(s)	223, 508, 770, 809
Sse9I	AATT	6 cut(s)	138, 198, 248, 290, 487, 826
SspMI	CTAG	2 cut(s)	408, 761
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	718
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	587, 679, 793
TaqI	TCGA	1 cut(s)	702
TasI	AATT	6 cut(s)	138, 198, 248, 290, 487, 826
TatI	WGTACW	1 cut(s)	49
Tru1I	TTAA	3 cut(s)	173, 519, 690
Tru9I	TTAA	3 cut(s)	173, 519, 690
TscAI	CASTG	1 cut(s)	684
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	4 cut(s)	33, 73, 362, 478
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	3 cut(s)	195, 320, 374
TspRI	CASTG	1 cut(s)	684
VpaK11BI	GGWCC	1 cut(s)	716
XceI	RCATGY	2 cut(s)	220, 240
XspI	CTAG	2 cut(s)	408, 761
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.