Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Forward (+)

20554260 .. 20555053

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1119300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAAAATATAAAAAAGGAAAAAATTATGGTCACACGATTTTTTATCAATAGTCCGTGTGCGTTGATCCCTAGGATCCCTAGAGAGGGAATCCGGCGAGGATCCAATTCCATCTTAATTTCTTTCAAGGATGTTGAGGCTCTCACTACAAGTGGCAGGATTCTTGAGTGGTTGTGTTCAGGTGGAGTGATTTTTGGATATCTTGATTTCCAATTCAACAAGCTAAAGTCATTAACATGGGTAGACTTTTTGATCAACAAGGAAAAAAGGAGACTCCCTTGCTTGCTTCCTAAATGCATGTCCTTTGTTAGAGAACTTGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

109

Amino Acids

12.54

Weight (kDa)

9.83

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AclWI	GGATC	5 cut(s)	61, 70, 83, 96, 109
AfiI	CCNNNNNNNGG	2 cut(s)	85, 86
AgsI	TTSAA	2 cut(s)	127, 217
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	5 cut(s)	61, 70, 83, 96, 109
AspA2I	CCTAGG	1 cut(s)	71
AvrII	CCTAGG	1 cut(s)	71
BamHI	GGATCC	2 cut(s)	75, 101
BccI	CCATC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	2 cut(s)	72, 81
BlnI	CCTAGG	1 cut(s)	71
BmiI	GGNNCC	2 cut(s)	77, 103
BpuEI	CTTGAG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 86
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	85, 86
BsiSI	CCGG	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	85, 86
BsmAI	GTCTC	1 cut(s)	265
Bsp143I	GATC	4 cut(s)	66, 75, 101, 252
BspLI	GGNNCC	2 cut(s)	77, 103
BspPI	GGATC	5 cut(s)	61, 70, 83, 96, 109
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	4 cut(s)	66, 75, 101, 252
BssT1I	CCWWGG	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	4 cut(s)	69, 78, 104, 255
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	4 cut(s)	66, 75, 101, 252
BstNSI	RCATGY	1 cut(s)	301
BstX2I	RGATCY	2 cut(s)	75, 101
BstYI	RGATCY	2 cut(s)	75, 101
BtsCI	GGATG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	284
CviAII	CATG	2 cut(s)	237, 298
CviJI	RGCY	2 cut(s)	140, 223
CviKI_1	RGCY	2 cut(s)	140, 223
DpnI	GATC	4 cut(s)	68, 77, 103, 254
DpnII	GATC	4 cut(s)	66, 75, 101, 252
Eco130I	CCWWGG	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	200
EcoRV	GATATC	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	240, 301
FaiI	YATR	4 cut(s)	11, 29, 238, 299
FatI	CATG	2 cut(s)	236, 297
FbaI	TGATCA	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	243
FokI	GGATG	1 cut(s)	143
FspBI	CTAG	2 cut(s)	72, 81
HapII	CCGG	1 cut(s)	94
Hin1II	CATG	2 cut(s)	240, 301
HinfI	GANTC	3 cut(s)	90, 160, 273
HpaII	CCGG	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188III	TCNNGA	2 cut(s)	164, 203
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	240, 301
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	4 cut(s)	66, 75, 101, 252
LpnPI	CCDG	3 cut(s)	107, 142, 165
MaeI	CTAG	2 cut(s)	72, 81
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	4 cut(s)	68, 77, 103, 254
MboI	GATC	4 cut(s)	66, 75, 101, 252
MflI	RGATCY	2 cut(s)	75, 101
MluCI	AATT	4 cut(s)	24, 106, 117, 212
MlyI	GAGTC	1 cut(s)	267
MnlI	CCTC	3 cut(s)	79, 92, 130
Mph1103I	ATGCAT	1 cut(s)	299
MseI	TTAA	2 cut(s)	116, 233
MslI	CAYNNNNRTG	1 cut(s)	235
MspI	CCGG	1 cut(s)	94
NdeII	GATC	4 cut(s)	66, 75, 101, 252
NlaIII	CATG	2 cut(s)	240, 301
NlaIV	GGNNCC	2 cut(s)	77, 103
NmuCI	GTSAC	1 cut(s)	31
NsiI	ATGCAT	1 cut(s)	299
NspI	RCATGY	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	90, 160
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	77, 103
PsuI	RGATCY	2 cut(s)	75, 101
RseI	CAYNNNNRTG	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	116, 233
Sau3AI	GATC	4 cut(s)	66, 75, 101, 252
SchI	GAGTC	1 cut(s)	267
SetI	ASST	2 cut(s)	184, 225
SmiMI	CAYNNNNRTG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	4 cut(s)	24, 106, 117, 212
SspMI	CTAG	2 cut(s)	72, 81
StyI	CCWWGG	1 cut(s)	71
TasI	AATT	4 cut(s)	24, 106, 117, 212
TfiI	GAWTC	2 cut(s)	90, 160
Tru1I	TTAA	2 cut(s)	116, 233
Tru9I	TTAA	2 cut(s)	116, 233
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	45
XceI	RCATGY	1 cut(s)	301
XmaJI	CCTAGG	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	2 cut(s)	72, 81
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.