Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Reverse (-)

13281300 .. 13283916

Gene Structure 2617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG158000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGCAGGAGGGAAATCTTGATGATTTGATCAGCAGCTTACCATTTGAAATACAGAAAAGAGTTGTTTCCTTGCTGCCATTGAAGGAAGCAGTAAGAACAAGCACTCTTTCTACATTTTGGAGAAGCCTCTGGTTTCCAATTCAGCTAAGCTTGGATTTTGATCCAAACCCATTAACCAATGAAGGGTCTGGTCAAGAAATCGAACAGGTTATGGGCATGTTCTTGAGGTCTTATGCATGTCCAGAAAAATTGGAGCTCAATCTCAAAGTCCTTGGCCATATCAATAAAGAATTGGTTGTCAAAGCTACCAAGGGGGTTGAGCAAGAGCTTCATGTTGAGTTCTTTGAAACTCAGAATGTTGCAGCAAAAACCCGTTTGAGCCTTCATAGCAATCCAGCCCAAAAATCTAGTTTCTTCGGGGTCAAGCTTCTTCACCTCAGATCAGTCACCCATCTTTCCAAACCTTTGGTTTCTATGCTGCTTTCAAATTGTAATGTTCTTGAAAGCTTGAGGCTTGTTAAATGTAGAGAGCTGGAGAGCCTTGAAGTAGAGACAGAGAGTCTTCAGAGCTTGGTGGTGGAAGACTGTTCAGATATTTCTGCTATTGTGGTTTCTGCTCCAAATCTAATATCTTTTGAGTATCATGGTGCTCTTGCTCAGATTGAGATAAAGAATACAGTGAGCTTGGTTAATGTTGTGCTCGATTTGAGAGATGGATCAGGAAGCAATGAGTTTGATTGTGAGGATGTCTTGCCCATCCTAGCTTCTCTCAAGGATGTTGAGGTTCTCACCGTAAGTGGCTGGCTTCTTGAGTGGTTGTGTTCAGCGGGAGTGATATTTGGGCGGCTTGAGTTTCAGTTCAACAAACTAAAGGAGTTGAGTTGCATTGATTCTGTTATCAGTAAGGACAAAAGGGATTCTCTTGCCTGCTTCCTAAACTCATGTCCTTCCTTGATGAAGTTGTCCGTCGAGGTAAGCATTTCAAATATTCAACTTTTTAACATACGAGTAATGCTAGACAAATCACATTTTCTCACCGTGACAACTGATATTGATTACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

354

Amino Acids

39.65

Weight (kDa)

5.09

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 44	7.4e-06	F-box domain
LRR_At5g56370	PF24758	130 - 216	1.1e-07	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	141 - 331	4e-15	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	827, 844
AclWI	GGATC	2 cut(s)	155, 724
AcoI	YGGCCR	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	548
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	9 cut(s)	47, 82, 347, 486, 503, 545, 862, 984, 992
AhdI	GACNNNNNGTC	1 cut(s)	558
Alw21I	GWGCWC	3 cut(s)	258, 652, 702
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	155, 724
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	4 cut(s)	33, 73, 362, 478
AsuHPI	GGTGA	4 cut(s)	425, 439, 781, 1027
BalI	TGGCCA	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	2 cut(s)	554, 588
Bbv12I	GWGCWC	3 cut(s)	258, 652, 702
BbvI	GCAGC	4 cut(s)	45, 60, 374, 465
BccI	CCATC	3 cut(s)	459, 707, 764
BclI	TGATCA	1 cut(s)	27
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	3 cut(s)	408, 761, 1016
BisI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	5 cut(s)	35, 75, 364, 480, 846
BmeRI	GACNNNNNGTC	1 cut(s)	558
BpiI	GAAGAC	2 cut(s)	554, 588
BpmI	CTGGAG	1 cut(s)	554
Bpu1102I	GCTNAGC	1 cut(s)	146
BpuEI	CTTGAG	5 cut(s)	244, 529, 755, 830, 869
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	271, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	733
Bse8I	GATNNNNATC	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	271, 309
BseGI	GGATG	3 cut(s)	751, 756, 781
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	733
BseMII	CTCAG	3 cut(s)	365, 451, 671
BseXI	GCAGC	4 cut(s)	45, 60, 374, 465
BshFI	GGCC	1 cut(s)	276
BsiHKAI	GWGCWC	3 cut(s)	258, 652, 702
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	545
BsnI	GGCC	1 cut(s)	276
Bsp1286I	GDGCHC	3 cut(s)	258, 652, 702
Bsp143I	GATC	4 cut(s)	27, 160, 440, 716
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	2 cut(s)	827, 844
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	3 cut(s)	364, 450, 670
BspPI	GGATC	2 cut(s)	155, 724
BsrDI	GCAATG	1 cut(s)	733
BssECI	CCNNGG	2 cut(s)	271, 309
BssMI	GATC	4 cut(s)	27, 160, 440, 716
BssT1I	CCWWGG	2 cut(s)	271, 309
Bst4CI	ACNGT	4 cut(s)	587, 679, 793, 1039
BstC8I	GCNNGC	2 cut(s)	803, 928
BstDEI	CTNAG	4 cut(s)	146, 351, 437, 657
BstF5I	GGATG	3 cut(s)	751, 756, 781
BstKTI	GATC	4 cut(s)	30, 163, 443, 719
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	4 cut(s)	27, 160, 440, 716
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstNSI	RCATGY	2 cut(s)	220, 240
BstV1I	GCAGC	4 cut(s)	45, 60, 374, 465
BstV2I	GAAGAC	2 cut(s)	554, 588
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	3 cut(s)	751, 756, 781
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	2 cut(s)	803, 928
CviAII	CATG	5 cut(s)	217, 237, 332, 644, 942
DdeI	CTNAG	4 cut(s)	146, 351, 437, 657
DpnI	GATC	4 cut(s)	29, 162, 442, 718
DpnII	GATC	4 cut(s)	27, 160, 440, 716
DriI	GACNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	274
Eam1105I	GACNNNNNGTC	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	2 cut(s)	271, 309
Eco24I	GRGCYC	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	271, 309
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	2 cut(s)	271, 309
FaeI	CATG	5 cut(s)	220, 240, 335, 647, 945
FatI	CATG	5 cut(s)	216, 236, 331, 643, 941
FauI	CCCGC	1 cut(s)	820
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
FokI	GGATG	3 cut(s)	743, 758, 788
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
FspBI	CTAG	3 cut(s)	408, 761, 1016
GluI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	220, 240, 335, 647, 945
HindIII	AAGCTT	3 cut(s)	148, 425, 505
HinfI	GANTC	3 cut(s)	559, 890, 917
HphI	GGTGA	4 cut(s)	425, 439, 781, 1027
Hpy188I	TCNGA	5 cut(s)	354, 440, 567, 592, 660
Hpy188III	TCNNGA	7 cut(s)	17, 194, 223, 242, 500, 720, 809
Hpy99I	CGWCG	1 cut(s)	971
HpyAV	CCTTC	4 cut(s)	76, 176, 392, 957
HpyCH4III	ACNGT	4 cut(s)	587, 679, 793, 1039
HpyCH4V	TGCA	4 cut(s)	4, 236, 362, 885
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
HpyF3I	CTNAG	4 cut(s)	146, 351, 437, 657
Hsp92II	CATG	5 cut(s)	220, 240, 335, 647, 945
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	27, 160, 440, 716
LmnI	GCTCC	2 cut(s)	253, 622
LpnPI	CCDG	9 cut(s)	115, 174, 191, 255, 408, 518, 705, 787, 940
Lsp1109I	GCAGC	4 cut(s)	45, 60, 374, 465
MaeI	CTAG	3 cut(s)	408, 761, 1016
MaeIII	GTNAC	2 cut(s)	445, 1039
MalI	GATC	4 cut(s)	29, 162, 442, 718
MboI	GATC	4 cut(s)	27, 160, 440, 716
MboII	GAAGA	4 cut(s)	406, 422, 554, 593
MhlI	GDGCHC	3 cut(s)	258, 652, 702
MlsI	TGGCCA	1 cut(s)	276
MluCI	AATT	4 cut(s)	138, 248, 290, 487
MluNI	TGGCCA	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	568
MnlI	CCTC	7 cut(s)	137, 219, 446, 504, 736, 775, 964
Mox20I	TGGCCA	1 cut(s)	276
Mph1103I	ATGCAT	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	276
MseI	TTAA	5 cut(s)	173, 519, 690, 999, 1063
Msp20I	TGGCCA	1 cut(s)	276
MspA1I	CMGCKG	1 cut(s)	827
MwoI	GCNNNNNNNGC	1 cut(s)	387
NdeII	GATC	4 cut(s)	27, 160, 440, 716
NlaIII	CATG	5 cut(s)	220, 240, 335, 647, 945
NmuCI	GTSAC	2 cut(s)	445, 1039
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	2 cut(s)	220, 240
PfeI	GAWTC	2 cut(s)	890, 917
PkrI	GCNGC	5 cut(s)	35, 75, 364, 480, 846
PleI	GAGTC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	258
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	5 cut(s)	173, 519, 690, 999, 1063
SatI	GCNGC	5 cut(s)	34, 74, 363, 479, 845
Sau3AI	GATC	4 cut(s)	27, 160, 440, 716
SchI	GAGTC	1 cut(s)	568
SduI	GDGCHC	3 cut(s)	258, 652, 702
SmlI	CTYRAG	5 cut(s)	223, 508, 770, 809, 848
SmoI	CTYRAG	5 cut(s)	223, 508, 770, 809, 848
Sse9I	AATT	4 cut(s)	138, 248, 290, 487
SsiI	CCGC	2 cut(s)	827, 844
SspI	AATATT	1 cut(s)	988
SspMI	CTAG	3 cut(s)	408, 761, 1016
SstI	GAGCTC	1 cut(s)	258
StyI	CCWWGG	2 cut(s)	271, 309
TaaI	ACNGT	4 cut(s)	587, 679, 793, 1039
TaqI	TCGA	3 cut(s)	201, 702, 969
TasI	AATT	4 cut(s)	138, 248, 290, 487
TauI	GCSGC	1 cut(s)	847
TfiI	GAWTC	2 cut(s)	890, 917
Tru1I	TTAA	5 cut(s)	173, 519, 690, 999, 1063
Tru9I	TTAA	5 cut(s)	173, 519, 690, 999, 1063
TscAI	CASTG	1 cut(s)	684
TseFI	GTSAC	2 cut(s)	445, 1039
TseI	GCWGC	4 cut(s)	33, 73, 362, 478
Tsp45I	GTSAC	2 cut(s)	445, 1039
TspDTI	ATGAA	4 cut(s)	195, 320, 374, 971
TspGWI	ACGGA	1 cut(s)	955
TspRI	CASTG	1 cut(s)	684
XceI	RCATGY	2 cut(s)	220, 240
XspI	CTAG	3 cut(s)	408, 761, 1016
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.