Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003808

Physical Location & Seq

Genomic Coordinates Reverse (-)

17206383 .. 17208205

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGATGGAGGAAAAGAGAGATGATTTGTTTGGTAGATTACCAAATGAGATCATTTGCCATATCATTTCTTTTCTTCCTTCAGAATCTGCATTAGAAACTAGTTTAATTTCAAGTAGGTGGAGAGGTCTATGGAACACATCTTTAGTTCAACGTGTAGCTATAGATGAAGTTCCTGATGCAGTTTCTGAGTTTATATCCCATTTTGACAAACTCAATCCCTTAAGGCACCCGAGAAGGCTAAAATTGTACTTCGGTGAAGGTAGTGATGATCTTCTCTTAGCTAGCACTGTAGCAAACAATAAACTTCATTTGGATTTCTCTACAGGGAAAAAGGAGGAGTACCCTCTAAGGCATTTTGATTTGCAGTTGCAGCTCAAATATGACCAAAATGTCCAAAACCTGCTTGTAGCTCACCACCAACCTTGTCCCTCTACTTTCTATGTCAAAACTCTTTTTCTAAAATCTGTTAACAATGTTATCAATGAGGCAGTTTCTTCTATGTTTTCGAGTTTTCAGTTCCTTGAACAATTGAAGATCATTGAATGTGATGGGTTACAAAGTTTGCATATCGAGTCCAGTCCAAAGCTACTCAGCTTAACCATCTTGGACTGTCAGCACCTAAATTCTCTCCACCTCAGAACCTCTAAACTTCAATCATTTCATTATCGAGGTTTCCTCCCTCGGATTTGGCCAGAACATCATTTCAACCTGGCAGATTCCATGCTTGATTTCAGATTCGGCCCCAGCTACACCGGTTTCAGCAGTAGCGACTTTGATCCATTGTTGTTAACCATAAAAAATGCTCAGGTTCTTAAAGTATGCAGATGGACTTTTCAGACACTGATCTGGCCATCGATTTCGCCTCTACAAGCAAAGTTCATGTTTTATAAGGTGAAAGAGTTATGGTGGATTGATAATGAGGAGGAATGTTACAACAGTGATGCCTTGATTTCCTTTCTAAAACTGTGTCCTGTTTTGGAAAGACTGTTTGTAACTAATGATCCTGAAAGCTACTGCATAACAAGCACAGCTCCAACCTCAAAGATAGTCAAAAGCCATACAAAATTTGGTCGTCTCGAAGTGATTAAGATGGTAGAGCATGTCAATGACTTGGGTACACAACATGTTCATTATATGGGCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

382

Amino Acids

44.14

Weight (kDa)

6.38

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	11 - 52	4.9e-06	F-box-like
F-box	PF00646	12 - 46	2.5e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	149 - 333	3.9e-09	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39490
fragaria_vesca	FvH4_6g14500 FvH4_7g21530 FvH4_7g21530
malus_domestica	MD01G1122000.v1.1 MD04G1119300.v1.1 MD07G1191500.v1.1
prunus_persica	Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1 Prupe.6G249000_v2.0.a1
pyrus_communis	pycom07g18090
rosa_chinensis	RchiOBHm_Chr1g0365841 RchiOBHm_Chr3g0467581
rosa_laevigata	RLG00000024488 RLG00000027387
rosa_multiflora	Rmu_co8341637.1_g000001 Rmu_co8477843.1_g000001 Rmu_sc0011632.1_g000014 Rmu_sc0023137.1_g000002
rosa_roxburghii	Rroxscaffold_4G00290810 Rroxscaffold_6G00413570
rosa_rugosa	Rorug01G0325000 Rorug03G0088300
rosa_samantha	Rh1AG333900 Rh1BG294500 Rh1CG311200 Rh1DG326900 Rh3AG136300 Rh3BG158200 Rh3CG158000 Rh3DG158800
rosa_wichuraiana	Rw1G029620 Rw3G012940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	888
AasI	GACNNNNNNGTC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	225
AclWI	GGATC	2 cut(s)	770, 995
AcoI	YGGCCR	2 cut(s)	689, 848
AcsI	RAATTY	2 cut(s)	622, 1064
AcuI	CTGAAG	1 cut(s)	63
AfaI	GTAC	3 cut(s)	248, 341, 1117
AflII	CTTAAG	1 cut(s)	220
AflIII	ACRYGT	2 cut(s)	151, 1123
AgeI	ACCGGT	1 cut(s)	752
AgsI	TTSAA	7 cut(s)	111, 149, 524, 532, 542, 653, 706
AhlI	ACTAGT	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	9 cut(s)	158, 281, 373, 410, 586, 594, 747, 1011, 1031
AluI	AGCT	9 cut(s)	158, 281, 373, 410, 586, 594, 747, 1011, 1031
Alw26I	GTCTC	1 cut(s)	1079
AlwI	GGATC	2 cut(s)	770, 995
AlwNI	CAGNNNCTG	3 cut(s)	86, 185, 841
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	4 cut(s)	689, 739, 848, 1138
ApeKI	GCWGC	1 cut(s)	370
ApoI	RAATTY	2 cut(s)	622, 1064
AsiGI	ACCGGT	1 cut(s)	752
AspS9I	GGNCC	2 cut(s)	740, 1138
AsuHPI	GGTGA	3 cut(s)	266, 404, 904
AsuNHI	GCTAGC	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	229
BalI	TGGCCA	2 cut(s)	691, 850
BanI	GGYRCC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	5 cut(s)	542, 608, 819, 859, 1084
BciT130I	CCWGG	1 cut(s)	710
BcoDI	GTCTC	1 cut(s)	1079
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	2 cut(s)	99, 282
BfmI	CTRYAG	4 cut(s)	159, 288, 321, 1142
BfrI	CTTAAG	1 cut(s)	220
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	372
Bme1390I	CCNGG	1 cut(s)	710
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	740, 1138
BmiI	GGNNCC	2 cut(s)	227, 742
BmrFI	CCNGG	1 cut(s)	710
BmsI	GCATC	2 cut(s)	166, 931
BmtI	GCTAGC	1 cut(s)	285
BplI	GAGNNNNNCTC	2 cut(s)	660, 692
Bpu10I	CCTNAGC	1 cut(s)	804
Bsa29I	ATCGAT	1 cut(s)	854
BsaJI	CCNNGG	1 cut(s)	680
BsaWI	WCCGGW	1 cut(s)	752
Bse118I	RCCGGY	1 cut(s)	752
Bse1I	ACTGG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	710
BseCI	ATCGAT	1 cut(s)	854
BseDI	CCNNGG	1 cut(s)	680
BseMII	CTCAG	4 cut(s)	177, 604, 649, 818
BseNI	ACTGG	1 cut(s)	576
BseRI	GAGGAG	2 cut(s)	350, 935
BseXI	GCAGC	1 cut(s)	382
BseYI	CCCAGC	1 cut(s)	743
BshFI	GGCC	4 cut(s)	691, 741, 850, 1140
BshNI	GGYRCC	1 cut(s)	225
BshTI	ACCGGT	1 cut(s)	752
BshVI	ATCGAT	1 cut(s)	854
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	753
BslFI	GGGAC	1 cut(s)	411
BsmAI	GTCTC	1 cut(s)	1079
BsmBI	CGTCTC	1 cut(s)	1079
BsmFI	GGGAC	1 cut(s)	411
BsnI	GGCC	4 cut(s)	691, 741, 850, 1140
BsoBI	CYCGRG	1 cut(s)	229
Bsp143I	GATC	6 cut(s)	48, 268, 534, 775, 843, 1000
BspANI	GGCC	4 cut(s)	691, 741, 850, 1140
BspCNI	CTCAG	4 cut(s)	178, 603, 648, 817
BspDI	ATCGAT	1 cut(s)	854
BspLI	GGNNCC	2 cut(s)	227, 742
BspMI	ACCTGC	1 cut(s)	408
BspOI	GCTAGC	1 cut(s)	285
BspPI	GGATC	2 cut(s)	770, 995
BspT107I	GGYRCC	1 cut(s)	225
BspTI	CTTAAG	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	752
BsrI	ACTGG	1 cut(s)	576
BssAI	RCCGGY	1 cut(s)	752
BssECI	CCNNGG	1 cut(s)	680
BssMI	GATC	6 cut(s)	48, 268, 534, 775, 843, 1000
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	5 cut(s)	289, 611, 938, 966, 987
BstAFI	CTTAAG	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	6 cut(s)	186, 277, 347, 590, 635, 804
BstKTI	GATC	6 cut(s)	51, 271, 537, 778, 846, 1003
BstMAI	GTCTC	1 cut(s)	1079
BstMBI	GATC	6 cut(s)	48, 268, 534, 775, 843, 1000
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 1023
BstNI	CCWGG	1 cut(s)	710
BstNSI	RCATGY	2 cut(s)	1103, 1127
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	4 cut(s)	159, 288, 321, 1142
BstV1I	GCAGC	1 cut(s)	382
Bsu15I	ATCGAT	1 cut(s)	854
BsuRI	GGCC	4 cut(s)	691, 741, 850, 1140
BsuTUI	ATCGAT	1 cut(s)	854
BtsIMutI	CAGTG	3 cut(s)	285, 839, 943
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	283
CaiI	CAGNNNCTG	3 cut(s)	86, 185, 841
Cfr10I	RCCGGY	1 cut(s)	752
Cfr13I	GGNCC	2 cut(s)	740, 1138
ClaI	ATCGAT	1 cut(s)	854
Csp6I	GTAC	3 cut(s)	247, 340, 1116
CspAI	ACCGGT	1 cut(s)	752
CspCI	CAANNNNNGTGG	2 cut(s)	404, 439
CviAII	CATG	4 cut(s)	721, 880, 1100, 1124
CviQI	GTAC	3 cut(s)	247, 340, 1116
DdeI	CTNAG	6 cut(s)	186, 277, 347, 590, 635, 804
DpnI	GATC	6 cut(s)	50, 270, 536, 777, 845, 1002
DpnII	GATC	6 cut(s)	48, 268, 534, 775, 843, 1000
DrdI	GACNNNNNNGTC	1 cut(s)	389
DseDI	GACNNNNNNGTC	1 cut(s)	389
EaeI	YGGCCR	2 cut(s)	689, 848
Eco57I	CTGAAG	1 cut(s)	63
Eco88I	CYCGRG	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	708
Esp3I	CGTCTC	1 cut(s)	1079
FaeI	CATG	4 cut(s)	724, 883, 1103, 1127
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	4 cut(s)	720, 879, 1099, 1123
Fnu4HI	GCNGC	1 cut(s)	371
Fsp4HI	GCNGC	1 cut(s)	371
FspBI	CTAG	2 cut(s)	99, 282
GluI	GCNGC	1 cut(s)	371
GsaI	CCCAGC	1 cut(s)	747
HaeIII	GGCC	4 cut(s)	691, 741, 850, 1140
HapII	CCGG	1 cut(s)	753
Hin1II	CATG	4 cut(s)	724, 883, 1103, 1127
HincII	GTYRAC	2 cut(s)	469, 789
HindII	GTYRAC	2 cut(s)	469, 789
HinfI	GANTC	4 cut(s)	83, 572, 716, 735
HpaI	GTTAAC	2 cut(s)	469, 789
HpaII	CCGG	1 cut(s)	753
HphI	GGTGA	3 cut(s)	266, 404, 904
Hpy166II	GTNNAC	3 cut(s)	469, 789, 1118
Hpy188I	TCNGA	6 cut(s)	82, 187, 638, 684, 734, 837
Hpy188III	TCNNGA	3 cut(s)	173, 1004, 1076
Hpy8I	GTNNAC	3 cut(s)	469, 789, 1118
HpyAV	CCTTC	3 cut(s)	87, 228, 251
HpyCH4III	ACNGT	5 cut(s)	289, 611, 938, 966, 987
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	7 cut(s)	89, 179, 364, 370, 565, 822, 1017
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 1023
HpyF3I	CTNAG	6 cut(s)	186, 277, 347, 590, 635, 804
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	4 cut(s)	724, 883, 1103, 1127
KspAI	GTTAAC	2 cut(s)	469, 789
Kzo9I	GATC	6 cut(s)	48, 268, 534, 775, 843, 1000
LmnI	GCTCC	1 cut(s)	1036
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	2 cut(s)	166, 931
MaeI	CTAG	2 cut(s)	99, 282
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	3 cut(s)	552, 929, 991
MalI	GATC	6 cut(s)	50, 270, 536, 777, 845, 1002
MboI	GATC	6 cut(s)	48, 268, 534, 775, 843, 1000
MboII	GAAGA	4 cut(s)	65, 263, 486, 544
MfeI	CAATTG	1 cut(s)	527
MlsI	TGGCCA	2 cut(s)	691, 850
MluCI	AATT	5 cut(s)	105, 242, 527, 622, 1064
MluNI	TGGCCA	2 cut(s)	691, 850
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	1058
Mox20I	TGGCCA	2 cut(s)	691, 850
MscI	TGGCCA	2 cut(s)	691, 850
MseI	TTAA	7 cut(s)	104, 221, 468, 596, 788, 813, 1086
MslI	CAYNNNNRTG	1 cut(s)	1104
Msp20I	TGGCCA	2 cut(s)	691, 850
MspCI	CTTAAG	1 cut(s)	220
MspI	CCGG	1 cut(s)	753
MspR9I	CCNGG	1 cut(s)	710
MunI	CAATTG	1 cut(s)	527
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	2 cut(s)	370, 1023
NdeII	GATC	6 cut(s)	48, 268, 534, 775, 843, 1000
NheI	GCTAGC	1 cut(s)	281
NlaIII	CATG	4 cut(s)	724, 883, 1103, 1127
NlaIV	GGNNCC	2 cut(s)	227, 742
NspI	RCATGY	2 cut(s)	1103, 1127
PciI	ACATGT	1 cut(s)	1123
PfeI	GAWTC	3 cut(s)	83, 716, 735
PinAI	ACCGGT	1 cut(s)	752
PkrI	GCNGC	1 cut(s)	372
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PscI	ACATGT	1 cut(s)	1123
PsiI	TTATAA	1 cut(s)	888
Psp6I	CCWGG	1 cut(s)	708
PspFI	CCCAGC	1 cut(s)	743
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	227, 742
PspPI	GGNCC	2 cut(s)	740, 1138
PstNI	CAGNNNCTG	3 cut(s)	86, 185, 841
RsaI	GTAC	3 cut(s)	248, 341, 1117
RsaNI	GTAC	3 cut(s)	247, 340, 1116
RseI	CAYNNNNRTG	1 cut(s)	1104
SaqAI	TTAA	7 cut(s)	104, 221, 468, 596, 788, 813, 1086
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	6 cut(s)	48, 268, 534, 775, 843, 1000
Sau96I	GGNCC	2 cut(s)	740, 1138
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	1 cut(s)	710
SfaNI	GCATC	2 cut(s)	166, 931
SfcI	CTRYAG	4 cut(s)	159, 288, 321, 1142
SmiMI	CAYNNNNRTG	1 cut(s)	1104
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	5 cut(s)	105, 242, 527, 622, 1064
SspMI	CTAG	2 cut(s)	99, 282
StyD4I	CCNGG	1 cut(s)	708
TaaI	ACNGT	5 cut(s)	289, 611, 938, 966, 987
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	5 cut(s)	506, 570, 667, 854, 1077
TasI	AATT	5 cut(s)	105, 242, 527, 622, 1064
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	3 cut(s)	83, 716, 735
Tru1I	TTAA	7 cut(s)	104, 221, 468, 596, 788, 813, 1086
Tru9I	TTAA	7 cut(s)	104, 221, 468, 596, 788, 813, 1086
TscAI	CASTG	3 cut(s)	292, 846, 943
TseI	GCWGC	1 cut(s)	370
TspDTI	ATGAA	5 cut(s)	180, 296, 650, 868, 1118
TspRI	CASTG	3 cut(s)	292, 846, 943
Vha464I	CTTAAG	1 cut(s)	220
XapI	RAATTY	2 cut(s)	622, 1064
XceI	RCATGY	2 cut(s)	1103, 1127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1064
XspI	CTAG	2 cut(s)	99, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.